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Properties
| Property Name | Value |
|---|
| TranscriptId | 595022 |
| Track | FilteredModels2 |
| ProteinId | 594936 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:576938..578421 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6412 ID=mRNA_6412|Name=jgi.p|Nanoce1779_2|594936|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ACAGGCGCCAATCCATCGTCCCACCATGCGGCAGCGGGGCACTGAAGTCA
GTCGGCGGCCATGGAGCATCCTGATGCTGCTGCTTGTGATGAGCGGCCTG
CAATGCCTTGGCGTAGAGGCCGTCCAGCCACCACAGCGAAAGCTGGGAAT
AGTGCAGCCACACTTAAAACGACTTGGTACGAAAGATTCGTTGCCGTCCC
CGGCCTTGGTGCTCTCCCGGCGCCGCGACTTGGCCATTCGCAGCAGCTCA
AGAGGTGAAGGAGCAGACTCCCCATCGAGGTGGCTGACCCGCGTACGAGG
TGGGGTACAGCCGGCTAAGAGCAAAAGTAAGGTCAAGGCTACTGCACCTA
CGGCCACTGGCAACAAAATCCGCTATGCAGGGGAGGCGGGGACCAAACAG
AAGGTCAAGGAGTGGTACAAGGCCACGCCCATCATCACCCGCGTTCAACT
CTCCACCTCCCTCCTCCTCACCGCCTTGGGCCTGGTGGCGATCGACCCTT
CATATTTTCTGCTGGATCCCGTGAAAATCGTAACTGGCCTGCAGCTGTGG
CGACCATTCACGGCCGCGGCTTTCATGGGTCCCCCATCTATGAGCTGGGT
TTCCAACCTGTACTTTTTACACCAATACGGCACAGCGCTCGAGAATTCGG
AAGGCGCCGCGCAGCAACTGGTGTTTTTGTTGTTCAACATTGCTGTGCTG
AGCTTTCTGGGTTCTCTGATTGGGCTGCCAGTGACCAGCAACGCCCTGAT
AACGGCTGCTCTGCATTGCCTCGGCCGCCAAGACCCTCTGCGAGACGTGA
ACTGGATGTTTGCCATCAAGATAAAGTACTGGATGCTGCCCTTTTGCCTT
GCCCTTGTCGACATGCTGCAAGCACAAAATCCCATGGCCGCCCTTCCTGC
CGCGTTGGGCATTTTGAGCGGCCATTTGTACTACTTTTTGCGGAATGTGT
GGCCTCAGATGGGTCACCGGGAGCTACTGTTGGCACCCGAATGGTGGTGC
AAGCTTCTGAATCGTAACAACGATGACATCATCTTCCGGAGAGACAAGCG
ACCCCTTGTGGGAGCGGACGGTAGCGCGGGAGGGACAGGTAGTGGTGGAA
GTTTGACTTCCATTTTGCCCAAGAAGAAGAAGAGCAAAATTTATAAGATG
AAAAAGACATCGTCATGATGAAATTTAGCCATAAATCAAAGCAAAAGTAT
AAAGTTTAGACCTGAAACCTA back to topprotein sequence of jgi.p|Nanoce1779_2|594936 >mRNA_6412-protein ID=mRNA_6412-protein|Name=jgi.p|Nanoce1779_2|594936|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MRQRGTEVSRRPWSILMLLLVMSGLQCLGVEAVQPPQRKLGIVQPHLKRL
GTKDSLPSPALVLSRRRDLAIRSSSRGEGADSPSRWLTRVRGGVQPAKSK
SKVKATAPTATGNKIRYAGEAGTKQKVKEWYKATPIITRVQLSTSLLLTA
LGLVAIDPSYFLLDPVKIVTGLQLWRPFTAAAFMGPPSMSWVSNLYFLHQ
YGTALENSEGAAQQLVFLLFNIAVLSFLGSLIGLPVTSNALITAALHCLG
RQDPLRDVNWMFAIKIKYWMLPFCLALVDMLQAQNPMAALPAALGILSGH
LYYFLRNVWPQMGHRELLLAPEWWCKLLNRNNDDIIFRRDKRPLVGADGS
AGGTGSGGSLTSILPKKKKSKIYKMKKTSS* back to topmRNA from alignment at scaffold_15:576938..578421- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6412 ID=mRNA_6412|Name=jgi.p|Nanoce1779_2|594936|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at scaffold_15:576938..578421- (Nannochloropsis oceanica)
ACAGGCGCCAATCCATCGTCCCACCATGCGGCAGCGGGGCACTGAAGTCA
GTCGGCGGCCATGGAGCATCCTGATGCTGCTGCTTGTGATGAGCGGCCTG
CAATGCCTTGGCGTAGAGGCCGTCCAGCCACCACAGCGAAAGCTGGGAAT
AGTGCAGCCACACTTAAAACGACTTGGTACGAAAGATTCGTTGCCGTCCC
CGGCCTTGGTGCTCTCCCGGCGCCGCGACTTGGCCATTCGCAGCAGCTCA
AGAGGTGAAGGAGCAGACTCCCCATCGAGGTGGCTGACCCGCGTACGAGG
TGGGGTACAGCCGGCTAAGAGCAAAAGTAAGGTCAAGGCTACTGCACCTA
CGGCCACTGGCAACAAAATCCGCTATGCAGGGGAGGCGGGGACCAAACAG
AAGGTCAAGGAGTGGTACAAGGCCACGCCCATCATCACCCGCGTTCAACT
CTCCACCTCCCTCCTCCTCACCGCCTTGGGCCTGGTGGCGATCGACCCTT
CATATTTTCTGCTGGATCCCGTGAAAATCGTAACTGGCCTGCAGCTGTGG
CGACCATTCACGGCCGCGGCTTTCATGGGTCCCCCATCTATGAGCTGGGT
TTCCAACCTGTACTTTTTACACCAATACGGTATGTGCCGAGGGACCTCAT
ATCGGGCGTGGATTCTCATTCCGAGCTTACGTCATGGCAACAAACAACAT
ACATACAGGCACAGCGCTCGAGAATTCGGAAGGCGCCGCGCAGCAACTGG
TGTTTTTGTTGTTCAACATTGCTGTGCTGAGCTTTCTGGGTTCTCTGATT
GGGCTGCCAGTGACCAGCAACGCCCTGATAACGGCTGCTCTGCATTGCCT
CGGCCGCCAAGACCCTCTGCGAGACGTGAACTGGATGTTTGCCATCAAGG
TATGTACTCTCATTGTGGAACGGAAAAGCATAGAGTGCTCGTGAGTAAAG
TGCCTCATGACGGCTTTAAATCATATTTTGACCGACACAGATAAAGTACT
GGATGCTGCCCTTTTGCCTTGCCCTTGTCGACATGCTGCAAGCACAAAAT
CCCATGGCCGCCCTTCCTGCCGCGTTGGGCATTTTGAGCGGTAAGTTATT
CATTCGCCTTGTCTCTCCCTTACCAGCTTCACATCTCACATGTACATGTG
TTTTTCCTCCCTCTTCCCCCCCCCCCCGCCAAGGCCATTTGTACTACTTT
TTGCGGAATGTGTGGCCTCAGATGGGTCACCGGGAGCTACTGTTGGCACC
CGAATGGTGGTGCAAGCTTCTGAATCGTAACAACGATGACATCATCTTCC
GGAGAGACAAGCGACCCCTTGTGGGAGCGGACGGTAGCGCGGGAGGGACA
GGTAGTGGTGGAAGTTTGACTTCCATTTTGCCCAAGAAGAAGAAGAGCAA
AATTTATAAGATGAAAAAGACATCGTCATGATGAAATTTAGCCATAAATC
AAAGCAAAAGTATAAAGTTTAGACCTGAAACCTA back to topCoding sequence (CDS) from alignment at scaffold_15:576938..578421- >mRNA_6412 ID=mRNA_6412|Name=jgi.p|Nanoce1779_2|594936|organism=Nannochloropsis oceanica|type=CDS|length=4572bp|location=Sequence derived from alignment at scaffold_15:576938..578421- (Nannochloropsis oceanica)
GCCATTTGTACTACTTTTTGCGGAATGTGTGGCCTCAGATGGGTCACCGG
GAGCTACTGTTGGCACCCGAATGGTGGTGCAAGCTTCTGAATCGTAACAA
CGATGACATCATCTTCCGGAGAGACAAGCGACCCCTTGTGGGAGCGGACG
GTAGCGCGGGAGGGACAGGTAGTGGTGGAAGTTTGACTTCCATTTTGCCC
AAGAAGAAGAAGAGCAAAATTTATAAGATGAAAAAGACATCGTCATGAAT
AAAGTACTGGATGCTGCCCTTTTGCCTTGCCCTTGTCGACATGCTGCAAG
CACAAAATCCCATGGCCGCCCTTCCTGCCGCGTTGGGCATTTTGAGCGGC
ACAGCGCTCGAGAATTCGGAAGGCGCCGCGCAGCAACTGGTGTTTTTGTT
GTTCAACATTGCTGTGCTGAGCTTTCTGGGTTCTCTGATTGGGCTGCCAG
TGACCAGCAACGCCCTGATAACGGCTGCTCTGCATTGCCTCGGCCGCCAA
GACCCTCTGCGAGACGTGAACTGGATGTTTGCCATCAAGATGCGGCAGCG
GGGCACTGAAGTCAGTCGGCGGCCATGGAGCATCCTGATGCTGCTGCTTG
TGATGAGCGGCCTGCAATGCCTTGGCGTAGAGGCCGTCCAGCCACCACAG
CGAAAGCTGGGAATAGTGCAGCCACACTTAAAACGACTTGGTACGAAAGA
TTCGTTGCCGTCCCCGGCCTTGGTGCTCTCCCGGCGCCGCGACTTGGCCA
TTCGCAGCAGCTCAAGAGGTGAAGGAGCAGACTCCCCATCGAGGTGGCTG
ACCCGCGTACGAGGTGGGGTACAGCCGGCTAAGAGCAAAAGTAAGGTCAA
GGCTACTGCACCTACGGCCACTGGCAACAAAATCCGCTATGCAGGGGAGG
CGGGGACCAAACAGAAGGTCAAGGAGTGGTACAAGGCCACGCCCATCATC
ACCCGCGTTCAACTCTCCACCTCCCTCCTCCTCACCGCCTTGGGCCTGGT
GGCGATCGACCCTTCATATTTTCTGCTGGATCCCGTGAAAATCGTAACTG
GCCTGCAGCTGTGGCGACCATTCACGGCCGCGGCTTTCATGGGTCCCCCA
TCTATGAGCTGGGTTTCCAACCTGTACTTTTTACACCAATACGGCCATTT
GTACTACTTTTTGCGGAATGTGTGGCCTCAGATGGGTCACCGGGAGCTAC
TGTTGGCACCCGAATGGTGGTGCAAGCTTCTGAATCGTAACAACGATGAC
ATCATCTTCCGGAGAGACAAGCGACCCCTTGTGGGAGCGGACGGTAGCGC
GGGAGGGACAGGTAGTGGTGGAAGTTTGACTTCCATTTTGCCCAAGAAGA
AGAAGAGCAAAATTTATAAGATGAAAAAGACATCGTCATGAATAAAGTAC
TGGATGCTGCCCTTTTGCCTTGCCCTTGTCGACATGCTGCAAGCACAAAA
TCCCATGGCCGCCCTTCCTGCCGCGTTGGGCATTTTGAGCGGCACAGCGC
TCGAGAATTCGGAAGGCGCCGCGCAGCAACTGGTGTTTTTGTTGTTCAAC
ATTGCTGTGCTGAGCTTTCTGGGTTCTCTGATTGGGCTGCCAGTGACCAG
CAACGCCCTGATAACGGCTGCTCTGCATTGCCTCGGCCGCCAAGACCCTC
TGCGAGACGTGAACTGGATGTTTGCCATCAAGATGCGGCAGCGGGGCACT
GAAGTCAGTCGGCGGCCATGGAGCATCCTGATGCTGCTGCTTGTGATGAG
CGGCCTGCAATGCCTTGGCGTAGAGGCCGTCCAGCCACCACAGCGAAAGC
TGGGAATAGTGCAGCCACACTTAAAACGACTTGGTACGAAAGATTCGTTG
CCGTCCCCGGCCTTGGTGCTCTCCCGGCGCCGCGACTTGGCCATTCGCAG
CAGCTCAAGAGGTGAAGGAGCAGACTCCCCATCGAGGTGGCTGACCCGCG
TACGAGGTGGGGTACAGCCGGCTAAGAGCAAAAGTAAGGTCAAGGCTACT
GCACCTACGGCCACTGGCAACAAAATCCGCTATGCAGGGGAGGCGGGGAC
CAAACAGAAGGTCAAGGAGTGGTACAAGGCCACGCCCATCATCACCCGCG
TTCAACTCTCCACCTCCCTCCTCCTCACCGCCTTGGGCCTGGTGGCGATC
GACCCTTCATATTTTCTGCTGGATCCCGTGAAAATCGTAACTGGCCTGCA
GCTGTGGCGACCATTCACGGCCGCGGCTTTCATGGGTCCCCCATCTATGA
GCTGGGTTTCCAACCTGTACTTTTTACACCAATACGGCCATTTGTACTAC
TTTTTGCGGAATGTGTGGCCTCAGATGGGTCACCGGGAGCTACTGTTGGC
ACCCGAATGGTGGTGCAAGCTTCTGAATCGTAACAACGATGACATCATCT
TCCGGAGAGACAAGCGACCCCTTGTGGGAGCGGACGGTAGCGCGGGAGGG
ACAGGTAGTGGTGGAAGTTTGACTTCCATTTTGCCCAAGAAGAAGAAGAG
CAAAATTTATAAGATGAAAAAGACATCGTCATGAATAAAGTACTGGATGC
TGCCCTTTTGCCTTGCCCTTGTCGACATGCTGCAAGCACAAAATCCCATG
GCCGCCCTTCCTGCCGCGTTGGGCATTTTGAGCGGCACAGCGCTCGAGAA
TTCGGAAGGCGCCGCGCAGCAACTGGTGTTTTTGTTGTTCAACATTGCTG
TGCTGAGCTTTCTGGGTTCTCTGATTGGGCTGCCAGTGACCAGCAACGCC
CTGATAACGGCTGCTCTGCATTGCCTCGGCCGCCAAGACCCTCTGCGAGA
CGTGAACTGGATGTTTGCCATCAAGATGCGGCAGCGGGGCACTGAAGTCA
GTCGGCGGCCATGGAGCATCCTGATGCTGCTGCTTGTGATGAGCGGCCTG
CAATGCCTTGGCGTAGAGGCCGTCCAGCCACCACAGCGAAAGCTGGGAAT
AGTGCAGCCACACTTAAAACGACTTGGTACGAAAGATTCGTTGCCGTCCC
CGGCCTTGGTGCTCTCCCGGCGCCGCGACTTGGCCATTCGCAGCAGCTCA
AGAGGTGAAGGAGCAGACTCCCCATCGAGGTGGCTGACCCGCGTACGAGG
TGGGGTACAGCCGGCTAAGAGCAAAAGTAAGGTCAAGGCTACTGCACCTA
CGGCCACTGGCAACAAAATCCGCTATGCAGGGGAGGCGGGGACCAAACAG
AAGGTCAAGGAGTGGTACAAGGCCACGCCCATCATCACCCGCGTTCAACT
CTCCACCTCCCTCCTCCTCACCGCCTTGGGCCTGGTGGCGATCGACCCTT
CATATTTTCTGCTGGATCCCGTGAAAATCGTAACTGGCCTGCAGCTGTGG
CGACCATTCACGGCCGCGGCTTTCATGGGTCCCCCATCTATGAGCTGGGT
TTCCAACCTGTACTTTTTACACCAATACGGCCATTTGTACTACTTTTTGC
GGAATGTGTGGCCTCAGATGGGTCACCGGGAGCTACTGTTGGCACCCGAA
TGGTGGTGCAAGCTTCTGAATCGTAACAACGATGACATCATCTTCCGGAG
AGACAAGCGACCCCTTGTGGGAGCGGACGGTAGCGCGGGAGGGACAGGTA
GTGGTGGAAGTTTGACTTCCATTTTGCCCAAGAAGAAGAAGAGCAAAATT
TATAAGATGAAAAAGACATCGTCATGAATAAAGTACTGGATGCTGCCCTT
TTGCCTTGCCCTTGTCGACATGCTGCAAGCACAAAATCCCATGGCCGCCC
TTCCTGCCGCGTTGGGCATTTTGAGCGGCACAGCGCTCGAGAATTCGGAA
GGCGCCGCGCAGCAACTGGTGTTTTTGTTGTTCAACATTGCTGTGCTGAG
CTTTCTGGGTTCTCTGATTGGGCTGCCAGTGACCAGCAACGCCCTGATAA
CGGCTGCTCTGCATTGCCTCGGCCGCCAAGACCCTCTGCGAGACGTGAAC
TGGATGTTTGCCATCAAGATGCGGCAGCGGGGCACTGAAGTCAGTCGGCG
GCCATGGAGCATCCTGATGCTGCTGCTTGTGATGAGCGGCCTGCAATGCC
TTGGCGTAGAGGCCGTCCAGCCACCACAGCGAAAGCTGGGAATAGTGCAG
CCACACTTAAAACGACTTGGTACGAAAGATTCGTTGCCGTCCCCGGCCTT
GGTGCTCTCCCGGCGCCGCGACTTGGCCATTCGCAGCAGCTCAAGAGGTG
AAGGAGCAGACTCCCCATCGAGGTGGCTGACCCGCGTACGAGGTGGGGTA
CAGCCGGCTAAGAGCAAAAGTAAGGTCAAGGCTACTGCACCTACGGCCAC
TGGCAACAAAATCCGCTATGCAGGGGAGGCGGGGACCAAACAGAAGGTCA
AGGAGTGGTACAAGGCCACGCCCATCATCACCCGCGTTCAACTCTCCACC
TCCCTCCTCCTCACCGCCTTGGGCCTGGTGGCGATCGACCCTTCATATTT
TCTGCTGGATCCCGTGAAAATCGTAACTGGCCTGCAGCTGTGGCGACCAT
TCACGGCCGCGGCTTTCATGGGTCCCCCATCTATGAGCTGGGTTTCCAAC
CTGTACTTTTTACACCAATACG back to top
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