jgi.p|Nanoce1779_2|92716, mRNA_6410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|92716
Unique NamemRNA_6410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1282
Alignment locationscaffold_15:570469..571955 -

Link to JBrowse

Properties
Property NameValue
TranscriptId92802
TrackFilteredModels2
ProteinId92716
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:570469..571955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|92716gene_6410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|92716mRNA_6410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6410CDS_6410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6410 ID=mRNA_6410|Name=jgi.p|Nanoce1779_2|92716|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
CGTTAACCGCCCCCCTCGGGCTTGTTCGACGGCTCCCGGGCTCTCTCCCC
CTATTAATCCTATTTTGAGTTCTTCTTTAACTCAAGACCCTCATCTGAAA
ACATAGTTAAGCAACATGTTCCTGTGAGACCTGTTTATTTTCTTCACCTC
CATGTACCGGCTCGTCCACCGCACACACATCCCGTGGGCTCGAAGTATCC
GTCATGCTGCCAGTTCCGCTCCTGTCGCCCCCTCCTCCTCCTCGACATAC
TCCGGCTTACCCAAGAAGTTATCAATTACATCATCTGGACGGCCATCATT
TCAATGCTTTTTGACACAAGAGAAACAAAGGCGAACTTTTGCAAGCGGTC
CAGCGTTTATTATCGACGATTTCACCCTTTCCTTGCCACCATTGCGACCG
CCAGAGCTGTCCACTCCAAGCCGGCTTGCTGATACCGCAGCCCACGGTGG
ATCCCCCAAGCATCGCCGTAGGAAAAAGGCGGCGCCGACTGATGAAGCAG
CTTCAGGTGTGGAAAATCCTACTTATGTCTCGCCATTGGATGCACCTCCT
AAAAAAACTCCGTCTTTGCGCCGGCGACGGAAAGTGTCGACAGCATCATC
GCCATCCCCGGATGCCAGCGCCGTCCCTTGTCCTCCTCTTTCTCCTCTAC
CTTCTCGCCCACGGATCGACAATGTCAACGAAGAAGCCTACGTCACCACT
ACTGACTCTATATCCGAACCCACGTTGCTCGAAAATAGGAAGAAGCAAAA
GGAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAACTACCACCTTCCA
ACCGTTCGCCCGCCGCCGTGACCGCCCGTAAATTGGCGGACTGGGACAGG
GAGCATGTGCCCAGCCTGGCGGCAGCTGAGCAGCTCGTAGAAGGGATTCG
GCAGCACTTGTCATACCGGTACTACCCACTCAAGGTCTTTCTAGATCAAA
TCCCAGACACGGTCACAGCACGAGACCTGTTTCAGATATTCGCGGGTTTG
AGTGGGAATGGCGAGGTGGAGGCAGTGGTAGTGTTGGAGGCAATGCGAGC
AAGGAGAAGGCGACAATGGACGGATGATTTGCAGGAAACAGGACCGAGAA
CGGCGATCATCCAGCTTGGTGACAAAGCCACCTACGACCGGGCCCTGAGC
GACGATGTACGGATGTTTGGCATCTGCTGGCAGGTAGGCAACAGGGAACT
TTACAGGGCGGGTGATGAAAGGAAGGTGTGTCTTTAGATCGATTGGGACA
TAATGACTCCTCTATGTAATACACACACCCCA
back to top

protein sequence of jgi.p|Nanoce1779_2|92716

>mRNA_6410-protein ID=mRNA_6410-protein|Name=jgi.p|Nanoce1779_2|92716|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MYRLVHRTHIPWARSIRHAASSAPVAPSSSSTYSGLPKKLSITSSGRPSF
QCFLTQEKQRRTFASGPAFIIDDFTLSLPPLRPPELSTPSRLADTAAHGG
SPKHRRRKKAAPTDEAASGVENPTYVSPLDAPPKKTPSLRRRRKVSTASS
PSPDASAVPCPPLSPLPSRPRIDNVNEEAYVTTTDSISEPTLLENRKKQK
EKKEKKEKKEKKLPPSNRSPAAVTARKLADWDREHVPSLAAAEQLVEGIR
QHLSYRYYPLKVFLDQIPDTVTARDLFQIFAGLSGNGEVEAVVVLEAMRA
RRRRQWTDDLQETGPRTAIIQLGDKATYDRALSDDVRMFGICWQVGNREL
YRAGDERKVCL*
back to top

mRNA from alignment at scaffold_15:570469..571955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6410 ID=mRNA_6410|Name=jgi.p|Nanoce1779_2|92716|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at scaffold_15:570469..571955- (Nannochloropsis oceanica)
CGTTAACCGCCCCCCTCGGGCTTGTTCGACGGCTCCCGGGCTCTCTCCCC
CTATTAATCCTATTTTGAGTTCTTCTTTAACTCAAGACCCTCATCTGAAA
ACATAGTTAAGCAACATGTTCCTGTGAGACCTGTTTATTTTCTTCACCTC
CATGTACCGGCTCGTCCACCGCACACACATCCCGTGGGCTCGAAGTATCC
GTCATGCTGCCAGTTCCGCTCCTGTCGCCCCCTCCTCCTCCTCGACATAC
TCCGGCTTACCCAAGAAGTTATCAATTACATCATCTGGACGGCCATCATT
TCAATGTAGGTTTCGTATTGGATGTGGCAGGGCGAAAGTGGCTGAGTTTC
AAAGGAAGACCACAAAGACCCACCTGACGTCTTCCTCCCTTCTACCCTGC
ACCCAAAGGCTTTTTGACACAAGAGAAACAAAGGCGAACTTTTGCAAGCG
GTCCAGCGTTTATTATCGACGATTTCACCCTTTCCTTGCCACCATTGCGA
CCGCCAGAGCTGTCCACTCCAAGCCGGCTTGCTGATACCGCAGCCCACGG
TGGATCCCCCAAGCATCGCCGTAGGAAAAAGGCGGCGCCGACTGATGAAG
CAGCTTCAGGTGTGGAAAATCCTACTTATGTCTCGCCATTGGATGCACCT
CCTAAAAAAACTCCGTCTTTGCGCCGGCGACGGAAAGTGTCGACAGCATC
ATCGCCATCCCCGGATGCCAGCGCCGTCCCTTGTCCTCCTCTTTCTCCTC
TACCTTCTCGCCCACGGATCGACAATGTCAACGAAGAAGCCTACGTCACC
ACTACTGACTCTATATCCGAACCCACGTTGCTCGAAAATAGGAAGAAGCA
AAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAACTACCACCTT
CCAACCGTTCGCCCGCCGCCGTGACCGCCCGTAAATTGGCGGACTGGGAC
AGGGAGCATGTGCCCAGCCTGGCGGCAGCTGAGCAGCTCGTAGAAGGGAT
TCGGCAGCACTTGTCATACCGGTACTACCCACTCAAGGTCTTTCTAGATC
AAATCCCAGACACGGTCACAGCACGAGACCTGTTTCAGATATTCGCGGGT
TTGAGTGGGAATGGCGAGGTGGAGGCAGTGGTAGTGTTGGAGGCAATGCG
AGCAAGGAGAAGGCGACAATGGACGGATGATTTGCAGGAAACAGGACCGA
GAACGGGTACGTTGCCATTGAAGGAATACATGCGCCCGTGATCAAGCTGC
CAAGAAAGGCCTGAACAGACTCTCACACGCGCATCACTCCTTTCACTCAA
ACACATAGCGATCATCCAGCTTGGTGACAAAGCCACCTACGACCGGGCCC
TGAGCGACGATGTACGGATGTTTGGCATCTGCTGGCAGGTAGGCAACAGG
GAACTTTACAGGGCGGGTGATGAAAGGAAGGTGTGTCTTTAGATCGATTG
GGACATAATGACTCCTCTATGTAATACACACACCCCA
back to top

Coding sequence (CDS) from alignment at scaffold_15:570469..571955-

>mRNA_6410 ID=mRNA_6410|Name=jgi.p|Nanoce1779_2|92716|organism=Nannochloropsis oceanica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_15:570469..571955- (Nannochloropsis oceanica)
CGATCATCCAGCTTGGTGACAAAGCCACCTACGACCGGGCCCTGAGCGAC
GATGTACGGATGTTTGGCATCTGCTGGCAGGTAGGCAACAGGGAACTTTA
CAGGGCGGGTGATGAAAGGAAGGTGTGTCTTTAGGCTTTTTGACACAAGA
GAAACAAAGGCGAACTTTTGCAAGCGGTCCAGCGTTTATTATCGACGATT
TCACCCTTTCCTTGCCACCATTGCGACCGCCAGAGCTGTCCACTCCAAGC
CGGCTTGCTGATACCGCAGCCCACGGTGGATCCCCCAAGCATCGCCGTAG
GAAAAAGGCGGCGCCGACTGATGAAGCAGCTTCAGGTGTGGAAAATCCTA
CTTATGTCTCGCCATTGGATGCACCTCCTAAAAAAACTCCGTCTTTGCGC
CGGCGACGGAAAGTGTCGACAGCATCATCGCCATCCCCGGATGCCAGCGC
CGTCCCTTGTCCTCCTCTTTCTCCTCTACCTTCTCGCCCACGGATCGACA
ATGTCAACGAAGAAGCCTACGTCACCACTACTGACTCTATATCCGAACCC
ACGTTGCTCGAAAATAGGAAGAAGCAAAAGGAGAAGAAGGAGAAGAAGGA
GAAGAAGGAGAAGAAACTACCACCTTCCAACCGTTCGCCCGCCGCCGTGA
CCGCCCGTAAATTGGCGGACTGGGACAGGGAGCATGTGCCCAGCCTGGCG
GCAGCTGAGCAGCTCGTAGAAGGGATTCGGCAGCACTTGTCATACCGGTA
CTACCCACTCAAGGTCTTTCTAGATCAAATCCCAGACACGGTCACAGCAC
GAGACCTGTTTCAGATATTCGCGGGTTTGAGTGGGAATGGCGAGGTGGAG
GCAGTGGTAGTGTTGGAGGCAATGCGAGCAAGGAGAAGGCGACAATGGAC
GGATGATTTGCAGGAAACAGGACCGAGAACGGATGTACCGGCTCGTCCAC
CGCACACACATCCCGTGGGCTCGAAGTATCCGTCATGCTGCCAGTTCCGC
TCCTGTCGCCCCCTCCTCCTCCTCGACATACTCCGGCTTACCCAAGAAGT
TATCAATTACATCATCTGGACGGCCATCATTTCAATCGATCATCCAGCTT
GGTGACAAAGCCACCTACGACCGGGCCCTGAGCGACGATGTACGGATGTT
TGGCATCTGCTGGCAGGTAGGCAACAGGGAACTTTACAGGGCGGGTGATG
AAAGGAAGGTGTGTCTTTAGGCTTTTTGACACAAGAGAAACAAAGGCGAA
CTTTTGCAAGCGGTCCAGCGTTTATTATCGACGATTTCACCCTTTCCTTG
CCACCATTGCGACCGCCAGAGCTGTCCACTCCAAGCCGGCTTGCTGATAC
CGCAGCCCACGGTGGATCCCCCAAGCATCGCCGTAGGAAAAAGGCGGCGC
CGACTGATGAAGCAGCTTCAGGTGTGGAAAATCCTACTTATGTCTCGCCA
TTGGATGCACCTCCTAAAAAAACTCCGTCTTTGCGCCGGCGACGGAAAGT
GTCGACAGCATCATCGCCATCCCCGGATGCCAGCGCCGTCCCTTGTCCTC
CTCTTTCTCCTCTACCTTCTCGCCCACGGATCGACAATGTCAACGAAGAA
GCCTACGTCACCACTACTGACTCTATATCCGAACCCACGTTGCTCGAAAA
TAGGAAGAAGCAAAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGA
AACTACCACCTTCCAACCGTTCGCCCGCCGCCGTGACCGCCCGTAAATTG
GCGGACTGGGACAGGGAGCATGTGCCCAGCCTGGCGGCAGCTGAGCAGCT
CGTAGAAGGGATTCGGCAGCACTTGTCATACCGGTACTACCCACTCAAGG
TCTTTCTAGATCAAATCCCAGACACGGTCACAGCACGAGACCTGTTTCAG
ATATTCGCGGGTTTGAGTGGGAATGGCGAGGTGGAGGCAGTGGTAGTGTT
GGAGGCAATGCGAGCAAGGAGAAGGCGACAATGGACGGATGATTTGCAGG
AAACAGGACCGAGAACGGATGTACCGGCTCGTCCACCGCACACACATCCC
GTGGGCTCGAAGTATCCGTCATGCTGCCAGTTCCGCTCCTGTCGCCCCCT
CCTCCTCCTCGACATACTCCGGCTTACCCAAGAAGTTATCAATTACATCA
TCTGGACGGCCATCATTTCAATCGATCATCCAGCTTGGTGACAAAGCCAC
CTACGACCGGGCCCTGAGCGACGATGTACGGATGTTTGGCATCTGCTGGC
AGGTAGGCAACAGGGAACTTTACAGGGCGGGTGATGAAAGGAAGGTGTGT
CTTTAGGCTTTTTGACACAAGAGAAACAAAGGCGAACTTTTGCAAGCGGT
CCAGCGTTTATTATCGACGATTTCACCCTTTCCTTGCCACCATTGCGACC
GCCAGAGCTGTCCACTCCAAGCCGGCTTGCTGATACCGCAGCCCACGGTG
GATCCCCCAAGCATCGCCGTAGGAAAAAGGCGGCGCCGACTGATGAAGCA
GCTTCAGGTGTGGAAAATCCTACTTATGTCTCGCCATTGGATGCACCTCC
TAAAAAAACTCCGTCTTTGCGCCGGCGACGGAAAGTGTCGACAGCATCAT
CGCCATCCCCGGATGCCAGCGCCGTCCCTTGTCCTCCTCTTTCTCCTCTA
CCTTCTCGCCCACGGATCGACAATGTCAACGAAGAAGCCTACGTCACCAC
TACTGACTCTATATCCGAACCCACGTTGCTCGAAAATAGGAAGAAGCAAA
AGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAACTACCACCTTCC
AACCGTTCGCCCGCCGCCGTGACCGCCCGTAAATTGGCGGACTGGGACAG
GGAGCATGTGCCCAGCCTGGCGGCAGCTGAGCAGCTCGTAGAAGGGATTC
GGCAGCACTTGTCATACCGGTACTACCCACTCAAGGTCTTTCTAGATCAA
ATCCCAGACACGGTCACAGCACGAGACCTGTTTCAGATATTCGCGGGTTT
GAGTGGGAATGGCGAGGTGGAGGCAGTGGTAGTGTTGGAGGCAATGCGAG
CAAGGAGAAGGCGACAATGGACGGATGATTTGCAGGAAACAGGACCGAGA
ACGGATGTACCGGCTCGTCCACCGCACACACATCCCGTGGGCTCGAAGTA
TCCGTCATGCTGCCAGTTCCGCTCCTGTCGCCCCCTCCTCCTCCTCGACA
TACTCCGGCTTACCCAAGAAGTTATCAATTACATCATCTGGACGGCCATC
ATTTCAAT
back to top
Synonyms
Publications