jgi.p|Nanoce1779_2|573618, mRNA_641 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573618
Unique Name	mRNA_641
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1696
Alignment location	scaffold_2:78940..80818 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573704
Track	FilteredModels2
ProteinId	573618

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:78940..80818 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573618	gene_641	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573618	mRNA_641-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_641	CDS_641	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:78940..80818+
coding sequence from alignment at scaffold_2:78940..80818+

mRNA sequence

>mRNA_641 ID=mRNA_641|Name=jgi.p|Nanoce1779_2|573618|organism=Nannochloropsis oceanica|type=mRNA|length=1696bp
AGGGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
AGGTTTTTGGGGTAGCGGAGGTGGGATTGGTGGACAAGGCGATGGTCGAC
CCGGATGGTGAGTAAGTCTTCCTTGCCTAGGAAGGCAGCAGAAAGGCGAG
CGGCGCGAACGTGGGTAACCTCGAGGAAATACCAGGTCCGGATTTGGAGG
TTGAGGTTGTCTAATACGATGGTAGTTGTGTCCTTTGCATCATACCCCTC
TTCGATTGTGCTGTTGTTGCTGCCACTGGTGGTGGTGGGTTTGCTGCAGC
GGTCGGCCAGATGGAGGCAGAGACGGTTGTTAGCAAGGTAGACATCGATA
CCGTGCCCTCCCTCGCTCATAAAGGTGAATAAATGTGCATGTTGCTGTTG
ATCCCGCTGCTCCTGTTCTTGAAGCTGTTGGCTCTCGGCGGTGCTGCTGT
TGCTGTTTCTGCTACTGCTGCTACTGCGGGAGTCCATTTGCAAAGGAGTA
CTCCCCTTCCCCCCACCGGCCAACCCACCACCTTCCCCTCCTCCCTCTTC
AAGAACCCCGCCATATGCCTCCGCCTCCTTCTCCTCCTTCCTCATCACCG
GGAAGCGCTCCACGCGAAACCAGCCCAAGAATTGATACGCATTGGGAAAT
GGCCATCCTCCCTGCATCCGAGGAATAATCAACCCCGACTGCGGGCCACC
CCCCAACGAAAAAAAGGAGGCAGGATGGGCCTTGATGCTCCTCAGACCTG
CTTGTTGCTCACTCCCTCCCCCCACCATCTCATGCAGAGCTTTCAGTATG
GCCGGCGTGAGCCGCACGCGCTGTTGTTGTCGTTGCTGACAGCGTAGATC
CTTCTCCTCCTTCTCTTCCCCCTCCTCTACCTCCTCCTGTTCCTCCTCAA
CAGTCCGAAGAAGACGCAGCACTCTTTTCAAGTCTTTCGCTGCCACCCCC
GCAGTGGCCACTATGCCTATGAGACGAATCAGTAAGCAAGCGACCTCCTC
CTCACCCTCTAGGGCTTGTCCTTCCACCACCATAAAGAGATCTAGAAGCT
TCGAGAGGATGCTGGCCCCATCCCCGTCCCCAGGACGGCTTTTGGCTGTT
GCTGGTATTGTCTGACTATCCCCTTTCCGTCTCGCGTTTCTTCTCCTCCC
ATGAGCGGTGCGGTGTGATAACGAAGAAGAAGAGGAGGAGGAGGAATTTA
GGGTGGCAGAGGAGTAGGAGGATATGGCATGACAGAAGCGCACGACACTG
TACACATTGTCTTGCAAGGCACGAACAAGGAGATGGAGAAATTTGCTCTT
GAAGTCCAGGCATAACCGTGGGAAAAGCCGGCCTCTTTTTCTAAATCCCT
TTCCATCCCCTAAATATGAGAAGAGAAGCCTTCCAATGGTCTGTCCGCTT
TCAGAGCCTAAGACAACGGTTGTCCGGCTGTCCACGATTGAGAGCAGGCG
AGGGGTGATTTCAGGATCAAAGATTCCTCTGCAGAGTGCACACACCAGTT
CGTCGGCTGTCATTGTGGCAATGACCTCGGGCGCCCAGCCGTCACCCGTC
TCGGCGAGTAGCGGGGCTAGAAGCGCCCGGGTCTCATCAAGAGATGGAGG
AGGCATGGTGGTGCTGTGGACTGGCTATTGGTACATTGCGAAAATCGTGG
TATGTTCCGCCATTCTTGCCATGAGACGGGCGGCGTCGGCTTTTGT

protein sequence of jgi.p|Nanoce1779_2|573618

>mRNA_641-protein ID=mRNA_641-protein|Name=jgi.p|Nanoce1779_2|573618|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MCMLLLIPLLLFLKLLALGGAAVAVSATAATAGVHLQRSTPLPPTGQPTT
FPSSLFKNPAICLRLLLLLPHHREALHAKPAQELIRIGKWPSSLHPRNNQ
PRLRATPQRKKGGRMGLDAPQTCLLLTPSPHHLMQSFQYGRREPHALLLS
LLTA*

mRNA from alignment at scaffold_2:78940..80818+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_641 ID=mRNA_641|Name=jgi.p|Nanoce1779_2|573618|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at scaffold_2:78940..80818+ (Nannochloropsis oceanica)
AGGGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
AGGTTTTTGGGGTAGCGGAGGTGGGATTGGTGGACAAGGCGATGGTCGAC
CCGGATGGTGAGTAAGTCTTCCTTGCCTAGGAAGGCAGCAGAAAGGCGAG
CGGCGCGAACGTGGGTAACCTCGAGGAAATACCAGGTCCGGATTTGGAGG
TTGAGGTTGTCTAATACGATGGTAGTTGTGTCCTTTGCATCATACCCCTC
TTCGATTGTGCTGTTGTTGCTGCCACTGGTGGTGGTGGGTTTGCTGCAGC
GGTCGGCCAGATGGAGGCAGAGACGGTTGTTAGCAAGGTAGACATCGATA
CCGTGCCCTCCCTCGCTCATAAAGGTGAATAAATGTGCATGTTGCTGTTG
ATCCCGCTGCTCCTGTTCTTGAAGCTGTTGGCTCTCGGCGGTGCTGCTGT
TGCTGTTTCTGCTACTGCTGCTACTGCGGGAGTCCATTTGCAAAGGAGTA
CTCCCCTTCCCCCCACCGGCCAACCCACCACCTTCCCCTCCTCCCTCTTC
AAGAACCCCGCCATATGCCTCCGCCTCCTTCTCCTCCTTCCTCATCACCG
GGAAGCGCTCCACGCGAAACCAGCCCAAGAATTGATACGCATTGGGAAAT
GGCCATCCTCCCTGCATCCGAGGAATAATCAACCCCGACTGCGGGCCACC
CCCCAACGAAAAAAAGGAGGCAGGATGGGCCTTGATGCTCCTCAGACCTG
CTTGTTGCTCACTCCCTCCCCCCACCATCTCATGCAGAGCTTTCAGTATG
GCCGGCGTGAGCCGCACGCGCTGTTGTTGTCGTTGCTGACAGCGTAGATC
CTTCTCCTCCTTCTCTTCCCCCTCCTCTACCTCCTCCTGTTCCTCCTCAA
CAGTCCGAAGAAGACGCAGCACTCTTTTCAAGTCTTTCGCTGCCACCCCC
GCAGTGGCCACTATGCCTATGAGACGAATCAGTAAGCAAGCGACCTCCTC
CTCACCCTCTAGGGCTTGTCCTTCCACCACCATAAAGAGATCTAGAAGCT
TCGAGAGGATGCTGGCCCCATCCCCGTCCCCAGGACGGCTTTTGGCTGTT
GCTGGTATTGTCTGACTATCCCCTTTCCGTCTCGCGTTTCTTCTCCTCCC
ATGAGCGGTGCGGTGTGATAACGAAGAAGAAGAGGAGGAGGAGGAATTTA
GGGTGGCAGAGGAGTAGGAGGATATGGCATGACAGAAGCGCACGACACTG
TACACATTGTCTTGCAAGGCACGAACAAGGAGATGGAGAAATTTGCTCTT
GAAGTCCAGGCATAACCGTGGGAAAAGCCGGCCTCTTTTTCTAAATCCCT
TTCCATCCCCTAAATATGAGAAGAGAAGCCTTCCAATGGTCTGTCCGCTT
TCAGAGCCTAAGACAACGGTTGTCCGGCTGTCCACGATTGAGAGCAGGCG
AGGGGTGATTTCAGGATCAAAGATTCCTCTGCAGAGTGCACACACCTATA
AATATTTTGGCGTGGGTGAGAGAGAGAGATGCGGGATGCGGCGGCAGGGT
AATGTAGGATTGGACGGAGACAAGGTGGAGCGTGGAGTGGGGGTCCGGCG
CGGGCTAAGCATTGCAGACAACACAGAGGGGCACGATGATATGTCGTGAC
CGCCAGTATATACACATCAAAAACTCACCAGTTCGTCGGCTGTCATTGTG
GCAATGACCTCGGGCGCCCAGCCGTCACCCGTCTCGGCGAGTAGCGGGGC
TAGAAGCGCCCGGGTCTCATCAAGAGATGGAGGAGGCATGGTGGTGCTGT
GGACTGGCTATTGGTACATTGCGAAAATCGTGGTATGTTCCGCCATTCTT
GCCATGAGACGGGCGGCGTCGGCTTTTGT

Coding sequence (CDS) from alignment at scaffold_2:78940..80818+

>mRNA_641 ID=mRNA_641|Name=jgi.p|Nanoce1779_2|573618|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_2:78940..80818+ (Nannochloropsis oceanica)
ATGTGCATGTTGCTGTTGATCCCGCTGCTCCTGTTCTTGAAGCTGTTGGC
TCTCGGCGGTGCTGCTGTTGCTGTTTCTGCTACTGCTGCTACTGCGGGAG
TCCATTTGCAAAGGAGTACTCCCCTTCCCCCCACCGGCCAACCCACCACC
TTCCCCTCCTCCCTCTTCAAGAACCCCGCCATATGCCTCCGCCTCCTTCT
CCTCCTTCCTCATCACCGGGAAGCGCTCCACGCGAAACCAGCCCAAGAAT
TGATACGCATTGGGAAATGGCCATCCTCCCTGCATCCGAGGAATAATCAA
CCCCGACTGCGGGCCACCCCCCAACGAAAAAAAGGAGGCAGGATGGGCCT
TGATGCTCCTCAGACCTGCTTGTTGCTCACTCCCTCCCCCCACCATCTCA
TGCAGAGCTTTCAGTATGGCCGGCGTGAGCCGCACGCGCTGTTGTTGTCG
TTGCTGACAGCGTAG

Synonyms

Publications