jgi.p|Nanoce1779_2|594924, mRNA_6408 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594924
Unique Name	mRNA_6408
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1055
Alignment location	scaffold_15:566130..567184 -

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Properties


Property Name	Value
TranscriptId	595010
Track	FilteredModels2
ProteinId	594924

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:566130..567184 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594924	gene_6408	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594924	mRNA_6408-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6408	CDS_6408	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:566130..567184-
coding sequence from alignment at scaffold_15:566130..567184-

mRNA sequence

>mRNA_6408 ID=mRNA_6408|Name=jgi.p|Nanoce1779_2|594924|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
CATGGAAAAAGTATTATTTGGAACAAATCGGAGGGGTGTAAGAAAGATGA
AGAAAGTAAAAGTTGAGCTTTGCCATGAGATCTGTCTTCAGAACAACGTA
GTTTGCTTTTGTTGTGCTGCGGCACCGCTTTTTGAGTTTGTGCTAGCGAA
ACATGACACAATGCATGTGAAGAAGTTATACCATATGACAGGTGTGATGC
TTGGTAACAAGATTGCAGTGTTGTATTGTAATAAACGTATGAACGATGGC
AAAGAGGTTCAGGCTTATATGGTCATGCAAAGATATGATTTTAGGAAATT
AAGCGTAATTTACATAGAGCGCATGTTTATTTGTTACATCTTTTATTGGC
CGAAAAGAAATTCAGATGCAACATGTTACGAGTCCCTTACGAATCCGCTC
TTCGAAAAATAAAACATTTATGCGAAAGGAGAATTTACCCTGAAAATGAT
GCATGCACGTATAAGAAATAAATATGAGCGGAACCCTGAGACGGGACAGA
TACAAACAGATCCACTATGTATTTGGTCGAGGAAGGGAATGACCGCGCCG
CACAAACTTCGAGGTAATTTAAGTGCACAAGACCTAAGCACCCCCCCTCA
CGGGATGTGACGCACTGCACCGTGCATTGTCGGCCTGATTTAGCATGCGG
CATAACAATCCTTCCCTGAGAGTACATTTGGAACAAGTAAGACAAGACAA
GACCTCCTGAACTCGAAGTCAGGTCCTGGTGTCGGATCTCTCGAGTCCAC
CTTCTCGAGCTTGTCGAGGGTCCACAGGGTGTGTGGGAGATCCATGTATT
GTCAATAGTGAAAGAGTACTTTCACCCGAGTCGGCGATGTTTCTATCGGA
CACCGTCCAAATCGCGGCAGGTGCGAAAAGGTCGTGATGGGGTGGTTTGG
GGTTGGACGGTGTCTGACCACTTTTTTCGCTGAAAGAAACATCGTTACCG
CGTCCTCCAGACCCTTCGGTCCTTCGATTTTGATTCCTCGGCCTTAAAAA
TTACAAATTCTCTTATTACACCATTCAAATTTTATTATATCAATGAACCG
ATAGC

protein sequence of jgi.p|Nanoce1779_2|594924

>mRNA_6408-protein ID=mRNA_6408-protein|Name=jgi.p|Nanoce1779_2|594924|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MEKVLFGTNRRGVRKMKKVKVELCHEICLQNNVVCFCCAAAPLFEFVLAK
HDTMHVKKLYHMTGVMLGNKIAVLYCNKRMNDGKEVQAYMVMQRYDFRKL
SVIYIERMFICYIFYWPKRNSDATCYESLTNPLFEK*

mRNA from alignment at scaffold_15:566130..567184-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6408 ID=mRNA_6408|Name=jgi.p|Nanoce1779_2|594924|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp|location=Sequence derived from alignment at scaffold_15:566130..567184- (Nannochloropsis oceanica)
CATGGAAAAAGTATTATTTGGAACAAATCGGAGGGGTGTAAGAAAGATGA
AGAAAGTAAAAGTTGAGCTTTGCCATGAGATCTGTCTTCAGAACAACGTA
GTTTGCTTTTGTTGTGCTGCGGCACCGCTTTTTGAGTTTGTGCTAGCGAA
ACATGACACAATGCATGTGAAGAAGTTATACCATATGACAGGTGTGATGC
TTGGTAACAAGATTGCAGTGTTGTATTGTAATAAACGTATGAACGATGGC
AAAGAGGTTCAGGCTTATATGGTCATGCAAAGATATGATTTTAGGAAATT
AAGCGTAATTTACATAGAGCGCATGTTTATTTGTTACATCTTTTATTGGC
CGAAAAGAAATTCAGATGCAACATGTTACGAGTCCCTTACGAATCCGCTC
TTCGAAAAATAAAACATTTATGCGAAAGGAGAATTTACCCTGAAAATGAT
GCATGCACGTATAAGAAATAAATATGAGCGGAACCCTGAGACGGGACAGA
TACAAACAGATCCACTATGTATTTGGTCGAGGAAGGGAATGACCGCGCCG
CACAAACTTCGAGGTAATTTAAGTGCACAAGACCTAAGCACCCCCCCTCA
CGGGATGTGACGCACTGCACCGTGCATTGTCGGCCTGATTTAGCATGCGG
CATAACAATCCTTCCCTGAGAGTACATTTGGAACAAGTAAGACAAGACAA
GACCTCCTGAACTCGAAGTCAGGTCCTGGTGTCGGATCTCTCGAGTCCAC
CTTCTCGAGCTTGTCGAGGGTCCACAGGGTGTGTGGGAGATCCATGTATT
GTCAATAGTGAAAGAGTACTTTCACCCGAGTCGGCGATGTTTCTATCGGA
CACCGTCCAAATCGCGGCAGGTGCGAAAAGGTCGTGATGGGGTGGTTTGG
GGTTGGACGGTGTCTGACCACTTTTTTCGCTGAAAGAAACATCGTTACCG
CGTCCTCCAGACCCTTCGGTCCTTCGATTTTGATTCCTCGGCCTTAAAAA
TTACAAATTCTCTTATTACACCATTCAAATTTTATTATATCAATGAACCG
ATAGC

Coding sequence (CDS) from alignment at scaffold_15:566130..567184-

>mRNA_6408 ID=mRNA_6408|Name=jgi.p|Nanoce1779_2|594924|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_15:566130..567184- (Nannochloropsis oceanica)
ATGGAAAAAGTATTATTTGGAACAAATCGGAGGGGTGTAAGAAAGATGAA
GAAAGTAAAAGTTGAGCTTTGCCATGAGATCTGTCTTCAGAACAACGTAG
TTTGCTTTTGTTGTGCTGCGGCACCGCTTTTTGAGTTTGTGCTAGCGAAA
CATGACACAATGCATGTGAAGAAGTTATACCATATGACAGGTGTGATGCT
TGGTAACAAGATTGCAGTGTTGTATTGTAATAAACGTATGAACGATGGCA
AAGAGGTTCAGGCTTATATGGTCATGCAAAGATATGATTTTAGGAAATTA
AGCGTAATTTACATAGAGCGCATGTTTATTTGTTACATCTTTTATTGGCC
GAAAAGAAATTCAGATGCAACATGTTACGAGTCCCTTACGAATCCGCTCT
TCGAAAAATAA

Synonyms

Publications