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Properties
| Property Name | Value |
|---|
| TranscriptId | 595007 |
| Track | FilteredModels2 |
| ProteinId | 594921 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:563105..565487 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6407 ID=mRNA_6407|Name=jgi.p|Nanoce1779_2|594921|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp
CATGAAGCTGACTACAGCTCTCATCGCACTGGTGAGCGCGCCATCTGTGG
CCAGGGCCGCCAGCAAAGGCTTGCGCGGAAACAAGCCTGGTGCTGCGGCG
GGTTCTGAGGACCTGTCTCGTCACCTGATGTGGACGGACCCGACCCTCGG
CGCGCACCACGGCAGCGGAGACGAGGGCGCCAGCGGCAGTGGCTGCGTCG
TGTCGGCGGAAATCGCTTCGCCGTGCAACATGTGGGCCTTTGTGAACGGC
GAGTCGTTGGACGCGACCATGGGCATGGGCAACGGCGCCTCCCACTCTAC
GCTTGCCCTGTCGGGGAACATCAGCAGCGTGACGCTCGTGCTCAAGTCCT
TCTGCACGGCCTTCTCCTTGCCCACTGTTATGTTGGGTGGGAACCCCGCG
CCCCAGCCCATGGTGGGGGCCACGTTTGATGTGTGTGGCGTGTCCGTGGC
GACCGACGACTCGTGGGTGTGCATCAACCACTTTCCCGAGGAGGGCAGCT
GGAGCTCCGCCTCCTTCGATGACAGCGCTTGGCCCTCTGCCGTGACGGTA
GATGCCGAAGGGCTTCCCAGTGGGTTGACGTTTATTGGTGGCGCGCCGGA
GACGTCCGACGGCGGCGCTGGTGGTGGATGGGAGACGTTCTGCCGCAAGA
CCGTGTCTCTTTCTGAGAGCACCGGCAATGAGAGTGTGCCTGTCCCTGCC
GTGCCGGCCACCCCTGCGCTGCCCTCGTTGCCCCCGGTCTGGATCACGCA
ATTGACTGTGGAGGGTAACTGCAGCCTGGCTCACGCGGACATGCACGATG
TGAGTGTGAACTTTGGCCACCTCCTCGGTCTTGCGGAGGAGCACGACGTA
CCGCCCGTGAACTGCACCTTGCTGGGCCACCACTCGGCACCCGCTCTGAC
GGTGCCCAACGCGTCTGCGTGCGCGCACGTAATCGACCCTTGCATCTTCG
ACTTCAGCTTCAGCGGCACCCAGGACTGGATGACGCTGGAAATGCTGAAG
AAGGCCATCCACGACAAGACTTTCGCCACCATCTTCGACACCCGCAACTC
CACGTCCATCGAGTTCTGCGATGTGCGTGAAATCATCGCCGATCTGCTGC
CTGGGGTGGGTGGCGACGAGGGGGACTCTACTCCTTCCACAGACGTTGAG
GATGGAAGCAACACGTCCTCCGAATCAGCCTCTCGGCCGGAGGACGGCTC
GACTGGTGCCGAGTCCGGCTCTGAGGATGACGATGATGCGGAGGACGGGG
AGGATGAGGCGGAAGATCCGGCTGTCGAGGATGATGGGTCCGTGAGCTTG
CTTCCCGGCTTTCCTTCGATGATCGAGTGCGACGCGACTGTGACATTCGA
GCTTGCCCCGCAAGGGCTCGGAGCCTTGTTCCAGGTGAACGGCATCAATG
GGCCGAACGTGACGGTGCGGGCCACGACATGCGTGAATGGCACGGAGGTG
GACACGAGCCTCAGCCTGTTTGACCAGGATCCGTCCGACGGCGCGTACCC
TCTGGCCAGCAACGACAACGACGAGAGCTGTGCCAGGGTCCCGACCTCGT
CCACGGTCAGCTTGTTCATGCCCATCAGCATCCCCGTCTTCCTGCGCGTG
CTCAACTTGGACGTGGAAGCGGGAGGCGTGGGCCTCAAAGTAAAGTGCGG
AGTTTATTAAGATAGCAGAGATTAGAGAGGAAGGGTATTGCATGTTGCAT
GAAGATTTTCCTCCGTTTTTTTTTTCAATTAAGACGGTATTAGATGAAAT
GCGCGCAGGTTTTGGAGACACAGTTGTTTGAGCGAGTGAACGGAAAAAGA
AAGGGAAAGACACGATAGAGACACGAAGGGAAGAGATGGAGAGATAACTA
GGCGTGGATGGACAGAAGGGCTACACCCCCAGCAGTTTTACATACATTGA
TCCTGGCCCGCGGGAGCAGGGTATTGACGGACACAATTTGAAGACAGATG
ATCACAATTCTTGACCGCGGTAGCGGCATGGAAAAAGTATTATTTGGAAC
AAATCGGAGGGGTGTAAGAAAGATGAAGAAAGTAAAAGTTGAGCTTTGCC
ATGAGATCTGTCTTCAGAACAACGTAGTTTGCTTTTGTTGTGCTGCGGCA
CCGCTTTTTGAGTTTGTGCTAGCGAAACATGACACAATGCATGTGAAGAA
GTTATACCATATGACAGGTGTGATGCTTGGTAACAAGATTGCAGTGTTGT
ATTGTAATAAACGTATGAACGATGGCAAAGAGGTTCAGGCTTATATGGTC
ATG back to topprotein sequence of jgi.p|Nanoce1779_2|594921 >mRNA_6407-protein ID=mRNA_6407-protein|Name=jgi.p|Nanoce1779_2|594921|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MKLTTALIALVSAPSVARAASKGLRGNKPGAAAGSEDLSRHLMWTDPTLG
AHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHST
LALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPQPMVGATFDVCGVSVA
TDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPE
TSDGGAGGGWETFCRKTVSLSESTGNESVPVPAVPATPALPSLPPVWITQ
LTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALT
VPNASACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNS
TSIEFCDVREIIADLLPGVGGDEGDSTPSTDVEDGSNTSSESASRPEDGS
TGAESGSEDDDDAEDGEDEAEDPAVEDDGSVSLLPGFPSMIECDATVTFE
LAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYP
LASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCG
VY* back to topmRNA from alignment at scaffold_15:563105..565487- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6407 ID=mRNA_6407|Name=jgi.p|Nanoce1779_2|594921|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at scaffold_15:563105..565487- (Nannochloropsis oceanica)
CATGAAGCTGACTACAGCTCTCATCGCACTGGTGAGCGCGCCATCTGTGG
CCAGGGCCGCCAGCAAAGGCTTGGTAAGTGACTTGTACGTGTGTCCCTCA
TCCGACCTGCTCCTTTCCTACCCGAAGCGTCCAGGCTTGCACGCCCCTGA
AGCAGACGAAAGGCTCACTCCTACCCTGGTCGTTCCCTTCTTCTTACCAA
CAGCGCGGAAACAAGCCTGGTGCTGCGGCGGGTTCTGAGGACCTGTCTCG
TCACCTGATGTGGACGGACCCGACCCTCGGCGCGCACCACGGCAGCGGAG
ACGAGGGCGCCAGCGGCAGTGGCTGCGTCGTGTCGGCGGAAATCGCTTCG
CCGTGCAACATGTGGGCCTTTGTGAACGGCGAGTCGTTGGACGCGACCAT
GGGCATGGGCAACGGCGCCTCCCACTCTACGCTTGCCCTGTCGGGGAACA
TCAGCAGCGTGACGCTCGTGCTCAAGTCCTTCTGCACGGCCTTCTCCTTG
CCCACTGTTATGTTGGGTGGGAACCCCGCGCCCCAGCCCATGGTGGGGGC
CACGTTTGATGTGTGTGGCGTGTCCGTGGCGACCGACGACTCGTGGGTGT
GCATCAACCACTTTCCCGAGGAGGGCAGCTGGAGCTCCGCCTCCTTCGAT
GACAGCGCTTGGCCCTCTGCCGTGACGGTAGATGCCGAAGGGCTTCCCAG
TGGGTTGACGTTTATTGGTGGCGCGCCGGAGACGTCCGACGGCGGCGCTG
GTGGTGGATGGGAGACGTTCTGCCGCAAGACCGTGTCTCTTTCTGAGAGC
ACCGGCAATGAGAGTGTGCCTGTCCCTGCCGTGCCGGCCACCCCTGCGCT
GCCCTCGTTGCCCCCGGTCTGGATCACGCAATTGACTGTGGAGGGTAACT
GCAGCCTGGCTCACGCGGACATGCACGATGTGAGTGTGAACTTTGGCCAC
CTCCTCGGTCTTGCGGAGGAGCACGACGTACCGCCCGTGAACTGCACCTT
GCTGGGCCACCACTCGGCACCCGCTCTGACGGTGCCCAACGCGTCTGCGT
GCGCGCACGTAATCGACCCTTGCATCTTCGACTTCAGCTTCAGCGGCACC
CAGGACTGGATGACGCTGGAAATGCTGAAGAAGGCCATCCACGACAAGAC
TTTCGCCACCATCTTCGACACCCGCAACTCCACGTCCATCGAGTTCTGCG
ATGTGCGTGAAATCATCGCCGATCTGCTGCCTGGGGTGGGTGGCGACGAG
GGGGACTCTACTCCTTCCACAGACGTTGAGGATGGAAGCAACACGTCCTC
CGAATCAGCCTCTCGGCCGGAGGACGGCTCGACTGGTGCCGAGTCCGGCT
CTGAGGATGACGATGATGCGGAGGACGGGGAGGATGAGGCGGAAGATCCG
GCTGTCGAGGATGATGGGTCCGTGAGCTTGCTTCCCGGCTTTCCTTCGAT
GATCGAGTGCGACGCGACTGTGACATTCGAGCTTGCCCCGCAAGGGCTCG
GAGCCTTGTTCCAGGTGAACGGCATCAATGGGCCGAACGTGACGGTGCGG
GCCACGACATGCGTGAATGGCACGGAGGTGGACACGAGCCTCAGCCTGTT
TGACCAGGATCCGTCCGACGGCGCGTACCCTCTGGCCAGCAACGACAACG
ACGAGAGCTGTGCCAGGGTCCCGACCTCGTCCACGGTCAGCTTGTTCATG
CCCATCAGCATCCCCGTCTTCCTGCGCGTGCTCAACTTGGACGTGGAAGC
GGGAGGCGTGGGCCTCAAAGTAAAGTGCGGAGTTTATTAAGATAGCAGAG
ATTAGAGAGGAAGGGTATTGCATGTTGCATGAAGATTTTCCTCCGTTTTT
TTTTTCAATTAAGACGGTATTAGATGAAATGCGCGCAGGTTTTGGAGACA
CAGTTGTTTGAGCGAGTGAACGGAAAAAGAAAGGGAAAGACACGATAGAG
ACACGAAGGGAAGAGATGGAGAGATAACTAGGCGTGGATGGACAGAAGGG
CTACACCCCCAGCAGTTTTACATACATTGATCCTGGCCCGCGGGAGCAGG
GTATTGACGGACACAATTTGAAGACAGATGATCACAATTCTTGACCGCGG
TAGCGGCATGGAAAAAGTATTATTTGGAACAAATCGGAGGGGTGTAAGAA
AGATGAAGAAAGTAAAAGTTGAGCTTTGCCATGAGATCTGTCTTCAGAAC
AACGTAGTTTGCTTTTGTTGTGCTGCGGCACCGCTTTTTGAGTTTGTGCT
AGCGAAACATGACACAATGCATGTGAAGAAGTTATACCATATGACAGGTG
TGATGCTTGGTAACAAGATTGCAGTGTTGTATTGTAATAAACGTATGAAC
GATGGCAAAGAGGTTCAGGCTTATATGGTCATG back to topCoding sequence (CDS) from alignment at scaffold_15:563105..565487- >mRNA_6407 ID=mRNA_6407|Name=jgi.p|Nanoce1779_2|594921|organism=Nannochloropsis oceanica|type=CDS|length=3318bp|location=Sequence derived from alignment at scaffold_15:563105..565487- (Nannochloropsis oceanica)
CGCGGAAACAAGCCTGGTGCTGCGGCGGGTTCTGAGGACCTGTCTCGTCA
CCTGATGTGGACGGACCCGACCCTCGGCGCGCACCACGGCAGCGGAGACG
AGGGCGCCAGCGGCAGTGGCTGCGTCGTGTCGGCGGAAATCGCTTCGCCG
TGCAACATGTGGGCCTTTGTGAACGGCGAGTCGTTGGACGCGACCATGGG
CATGGGCAACGGCGCCTCCCACTCTACGCTTGCCCTGTCGGGGAACATCA
GCAGCGTGACGCTCGTGCTCAAGTCCTTCTGCACGGCCTTCTCCTTGCCC
ACTGTTATGTTGGGTGGGAACCCCGCGCCCCAGCCCATGGTGGGGGCCAC
GTTTGATGTGTGTGGCGTGTCCGTGGCGACCGACGACTCGTGGGTGTGCA
TCAACCACTTTCCCGAGGAGGGCAGCTGGAGCTCCGCCTCCTTCGATGAC
AGCGCTTGGCCCTCTGCCGTGACGGTAGATGCCGAAGGGCTTCCCAGTGG
GTTGACGTTTATTGGTGGCGCGCCGGAGACGTCCGACGGCGGCGCTGGTG
GTGGATGGGAGACGTTCTGCCGCAAGACCGTGTCTCTTTCTGAGAGCACC
GGCAATGAGAGTGTGCCTGTCCCTGCCGTGCCGGCCACCCCTGCGCTGCC
CTCGTTGCCCCCGGTCTGGATCACGCAATTGACTGTGGAGGGTAACTGCA
GCCTGGCTCACGCGGACATGCACGATGTGAGTGTGAACTTTGGCCACCTC
CTCGGTCTTGCGGAGGAGCACGACGTACCGCCCGTGAACTGCACCTTGCT
GGGCCACCACTCGGCACCCGCTCTGACGGTGCCCAACGCGTCTGCGTGCG
CGCACGTAATCGACCCTTGCATCTTCGACTTCAGCTTCAGCGGCACCCAG
GACTGGATGACGCTGGAAATGCTGAAGAAGGCCATCCACGACAAGACTTT
CGCCACCATCTTCGACACCCGCAACTCCACGTCCATCGAGTTCTGCGATG
TGCGTGAAATCATCGCCGATCTGCTGCCTGGGGTGGGTGGCGACGAGGGG
GACTCTACTCCTTCCACAGACGTTGAGGATGGAAGCAACACGTCCTCCGA
ATCAGCCTCTCGGCCGGAGGACGGCTCGACTGGTGCCGAGTCCGGCTCTG
AGGATGACGATGATGCGGAGGACGGGGAGGATGAGGCGGAAGATCCGGCT
GTCGAGGATGATGGGTCCGTGAGCTTGCTTCCCGGCTTTCCTTCGATGAT
CGAGTGCGACGCGACTGTGACATTCGAGCTTGCCCCGCAAGGGCTCGGAG
CCTTGTTCCAGGTGAACGGCATCAATGGGCCGAACGTGACGGTGCGGGCC
ACGACATGCGTGAATGGCACGGAGGTGGACACGAGCCTCAGCCTGTTTGA
CCAGGATCCGTCCGACGGCGCGTACCCTCTGGCCAGCAACGACAACGACG
AGAGCTGTGCCAGGGTCCCGACCTCGTCCACGGTCAGCTTGTTCATGCCC
ATCAGCATCCCCGTCTTCCTGCGCGTGCTCAACTTGGACGTGGAAGCGGG
AGGCGTGGGCCTCAAAGTAAAGTGCGGAGTTTATTAAATGAAGCTGACTA
CAGCTCTCATCGCACTGGTGAGCGCGCCATCTGTGGCCAGGGCCGCCAGC
AAAGGCTTGCGCGGAAACAAGCCTGGTGCTGCGGCGGGTTCTGAGGACCT
GTCTCGTCACCTGATGTGGACGGACCCGACCCTCGGCGCGCACCACGGCA
GCGGAGACGAGGGCGCCAGCGGCAGTGGCTGCGTCGTGTCGGCGGAAATC
GCTTCGCCGTGCAACATGTGGGCCTTTGTGAACGGCGAGTCGTTGGACGC
GACCATGGGCATGGGCAACGGCGCCTCCCACTCTACGCTTGCCCTGTCGG
GGAACATCAGCAGCGTGACGCTCGTGCTCAAGTCCTTCTGCACGGCCTTC
TCCTTGCCCACTGTTATGTTGGGTGGGAACCCCGCGCCCCAGCCCATGGT
GGGGGCCACGTTTGATGTGTGTGGCGTGTCCGTGGCGACCGACGACTCGT
GGGTGTGCATCAACCACTTTCCCGAGGAGGGCAGCTGGAGCTCCGCCTCC
TTCGATGACAGCGCTTGGCCCTCTGCCGTGACGGTAGATGCCGAAGGGCT
TCCCAGTGGGTTGACGTTTATTGGTGGCGCGCCGGAGACGTCCGACGGCG
GCGCTGGTGGTGGATGGGAGACGTTCTGCCGCAAGACCGTGTCTCTTTCT
GAGAGCACCGGCAATGAGAGTGTGCCTGTCCCTGCCGTGCCGGCCACCCC
TGCGCTGCCCTCGTTGCCCCCGGTCTGGATCACGCAATTGACTGTGGAGG
GTAACTGCAGCCTGGCTCACGCGGACATGCACGATGTGAGTGTGAACTTT
GGCCACCTCCTCGGTCTTGCGGAGGAGCACGACGTACCGCCCGTGAACTG
CACCTTGCTGGGCCACCACTCGGCACCCGCTCTGACGGTGCCCAACGCGT
CTGCGTGCGCGCACGTAATCGACCCTTGCATCTTCGACTTCAGCTTCAGC
GGCACCCAGGACTGGATGACGCTGGAAATGCTGAAGAAGGCCATCCACGA
CAAGACTTTCGCCACCATCTTCGACACCCGCAACTCCACGTCCATCGAGT
TCTGCGATGTGCGTGAAATCATCGCCGATCTGCTGCCTGGGGTGGGTGGC
GACGAGGGGGACTCTACTCCTTCCACAGACGTTGAGGATGGAAGCAACAC
GTCCTCCGAATCAGCCTCTCGGCCGGAGGACGGCTCGACTGGTGCCGAGT
CCGGCTCTGAGGATGACGATGATGCGGAGGACGGGGAGGATGAGGCGGAA
GATCCGGCTGTCGAGGATGATGGGTCCGTGAGCTTGCTTCCCGGCTTTCC
TTCGATGATCGAGTGCGACGCGACTGTGACATTCGAGCTTGCCCCGCAAG
GGCTCGGAGCCTTGTTCCAGGTGAACGGCATCAATGGGCCGAACGTGACG
GTGCGGGCCACGACATGCGTGAATGGCACGGAGGTGGACACGAGCCTCAG
CCTGTTTGACCAGGATCCGTCCGACGGCGCGTACCCTCTGGCCAGCAACG
ACAACGACGAGAGCTGTGCCAGGGTCCCGACCTCGTCCACGGTCAGCTTG
TTCATGCCCATCAGCATCCCCGTCTTCCTGCGCGTGCTCAACTTGGACGT
GGAAGCGGGAGGCGTGGGCCTCAAAGTAAAGTGCGGAGTTTATTAAATGA
AGCTGACTACAGCTCTCATCGCACTGGTGAGCGCGCCATCTGTGGCCAGG
GCCGCCAGCAAAGGCTTG back to top
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