jgi.p|Nanoce1779_2|594918, mRNA_6405 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594918
Unique NamemRNA_6405
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length633
Alignment locationscaffold_15:559774..561124 +

Link to JBrowse

Properties
Property NameValue
TranscriptId595004
TrackFilteredModels2
ProteinId594918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:559774..561124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594918gene_6405Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594918mRNA_6405-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6405CDS_6405Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6405 ID=mRNA_6405|Name=jgi.p|Nanoce1779_2|594918|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ACAGCTGCCAATTACTGAGAGTGCGGCGGCCAGGAACGACTCGGTTGTCT
TGAGGAGATATGTCGGGGCTCAAGGCTGTCATGCGAGTCTCCCCTGCCCT
TGCCAAAGTTCTGGGCGACAACCAAATGCCCCGCACAGAAGCCGTCAAAC
GAATCTGGTCGTATATCAAGGATAAGGACTTGCAAAACCCATCCAACAAG
CGCGAGATTTTGTGCGACGAGTCCCTCAAGGCCGTGTTCGAGAAAGATTC
GGTCACCATGTTTGAAATGATGAAACTCATGAGCAAGCACATAACCAAGC
CGTGAACAAAGCATAAGACAAGCGCTATCTGTTCTCAACATTGCTTCGGA
TATGAGACGGATGCGAGTGTGTGTGACGTTCAAGGAAACAAAGCATTAAG
TACAGTCTCTGAATTTAGAAGACACGGCCGTGTGTGATTTTAGTTGGAAA
AATGGAAGCTCTCCGTCATTTCTGATTTTGTATGTAGTGTGTGAAAGCTC
AATGGAGGCAATTTTTAAAAATAGAAAACGAGATCGCCGTGTACAGGCAC
GAACAGGGGACCGATAAAAGCGAGGAAGCAGAGAGACCGCGTGTGAATAC
CACAAAGAAAGAAACTCTCAGCCCACAAGTTAA
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protein sequence of jgi.p|Nanoce1779_2|594918

>mRNA_6405-protein ID=mRNA_6405-protein|Name=jgi.p|Nanoce1779_2|594918|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MSGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREI
LCDESLKAVFEKDSVTMFEMMKLMSKHITKP*
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mRNA from alignment at scaffold_15:559774..561124+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6405 ID=mRNA_6405|Name=jgi.p|Nanoce1779_2|594918|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp|location=Sequence derived from alignment at scaffold_15:559774..561124+ (Nannochloropsis oceanica)
ACAGCTGCCAATTACTGAGAGTGCGGCGGCCAGGAACGACTCGGTTGTCT
TGAGGAGGTAAGAAGGATGGAGGCGCAGTTCGCCTTGTCTGTACTGAATG
CGCATGCCGACCCCGCCGCACCCTGCTTTTTAATTTTGTTTCGTATGGGC
ACGTGAAGATGTGCATGTGCGGACAGTGTTTGGAATGGTGGTACTCTTGC
GTCATTGTGCTCGCATGCACTCCACCTTCCACCCCGGATCTAAAATACAT
CACCGCAACGCACTCTAGCTAGAGGGGAGTATTGGCCTTTTCATCGTGGC
CTTGCTTCCTGTACATCGAACATACCAAGAGATGCAAAAACAATCTGAGA
GAACTAGAGTTGGAGGAAGGCTCTTTATCCCAGGTCTCCCCCCGCTTCGT
TGTCTTACATTTCCTATCCCACCTCCCACTCCGCGTGCGTGTTTGTATCT
CGCTTGCCCCCTAGACTGACATTCACATATTATGACTCACCATGCCCCAT
AATATAAACACGCAACACGAAACCAGATATGTCGGGGCTCAAGGCTGTCA
TGCGAGTCTCCCCTGCCCTTGCCAAAGTTCTGGGCGACAACCAAATGCCC
CGCACAGAAGCCGTCAAACGAATGTAGGTCGCAGCGTGATTCCGCCACGA
GGACATCTATATTCGGCTCTCTTTCCTTTCCCTGCGAAGTGTTGCGTAAT
GCTCTTATTTTTTGCATTTGTGAAATTCTTTCCAATTAGATGTCCCAGCA
TTGGCTTTGGAAAGGCTTGGGCGCAGTTTCCTTTTCTACTTGCCTGCCCG
ATGCACCTTCTTACACTCCTCTCCTTCCGCTTCCCTTCTCTCTCCCCCGA
CACTCACCGATTCTCTATCCAGCTGGTCGTATATCAAGGATAAGGACTTG
CAAAACCCATCCAACAAGCGCGAGATTTTGTGCGACGAGTCCCTCAAGGC
CGTGTTCGAGAAAGATTCGGTCACCATGTTTGAAATGATGAAACTCATGA
GCAAGCACATAACCAAGCCGTGAACAAAGCATAAGACAAGCGCTATCTGT
TCTCAACATTGCTTCGGATATGAGACGGATGCGAGTGTGTGTGACGTTCA
AGGAAACAAAGCATTAAGTACAGTCTCTGAATTTAGAAGACACGGCCGTG
TGTGATTTTAGTTGGAAAAATGGAAGCTCTCCGTCATTTCTGATTTTGTA
TGTAGTGTGTGAAAGCTCAATGGAGGCAATTTTTAAAAATAGAAAACGAG
ATCGCCGTGTACAGGCACGAACAGGGGACCGATAAAAGCGAGGAAGCAGA
GAGACCGCGTGTGAATACCACAAAGAAAGAAACTCTCAGCCCACAAGTTA
A
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Coding sequence (CDS) from alignment at scaffold_15:559774..561124+

>mRNA_6405 ID=mRNA_6405|Name=jgi.p|Nanoce1779_2|594918|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_15:559774..561124+ (Nannochloropsis oceanica)
ATGTCGGGGCTCAAGGCTGTCATGCGAGTCTCCCCTGCCCTTGCCAAAGT
TCTGGGCGACAACCAAATGCCCCGCACAGAAGCCGTCAAACGAATCTGGT
CGTATATCAAGGATAAGGACTTGCAAAACCCATCCAACAAGCGCGAGATT
TTGTGCGACGAGTCCCTCAAGGCCGTGTTCGAGAAAGATTCGGTCACCAT
GTTTGAAATGATGAAACTCATGAGCAAGCACATAACCAAGCCGTGAATGT
CGGGGCTCAAGGCTGTCATGCGAGTCTCCCCTGCCCTTGCCAAAGTTCTG
GGCGACAACCAAATGCCCCGCACAGAAGCCGTCAAACGAATCTGGTCGTA
TATCAAGGATAAGGACTTGCAAAACCCATCCAACAAGCGCGAGATTTTGT
GCGACGAGTCCCTCAAGGCCGTGTTCGAGAAAGATTCGGTCACCATGTTT
GAAATGATGAAACTCATGAGCAAGCACATAACCAAGCCGTGA
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Synonyms
Publications