jgi.p|Nanoce1779_2|530173, mRNA_6404 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530173
Unique NamemRNA_6404
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length336
Alignment locationscaffold_15:558810..559145 -

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Properties
Property NameValue
TranscriptId530259
TrackFilteredModels2
ProteinId530173
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:558810..559145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530173gene_6404Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6404CDS_6404Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530173mRNA_6404-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6404 ID=mRNA_6404|Name=jgi.p|Nanoce1779_2|530173|organism=Nannochloropsis oceanica|type=mRNA|length=336bp
ATGGCGATTACTAGCGTGACTGCAACAAGCCCCCCCAGAAGCAGCAGGAA
GAAGCGCTCCACCAGCAGCAGCATACGCCAGCAACCTCAGACGCAGCATG
ATCCCGGTCCCGAAGGCCGTAGTTTTACGCGAGGCAGCTTGCCCCCTATT
GATGCTATCCGACGGTACAAGGAAATAGTGGCTCCACATGTGGAGTCATT
CAATTACTTTCTTGACACGGGATTGAGAGACGCGGTGGCATGCCTCAATC
CGGTCGAAGCTCGGTTAAGTGCTGACGGCGAGAGCGGACCTTTGCTGAAA
TTATGGGTGGAGGACTGTGAGGTGGGCTTCCCGACA
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protein sequence of jgi.p|Nanoce1779_2|530173

>mRNA_6404-protein ID=mRNA_6404-protein|Name=jgi.p|Nanoce1779_2|530173|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MAITSVTATSPPRSSRKKRSTSSSIRQQPQTQHDPGPEGRSFTRGSLPPI
DAIRRYKEIVAPHVESFNYFLDTGLRDAVACLNPVEARLSADGESGPLLK
LWVEDCEVGFPT
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mRNA from alignment at scaffold_15:558810..559145-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6404 ID=mRNA_6404|Name=jgi.p|Nanoce1779_2|530173|organism=Nannochloropsis oceanica|type=mRNA|length=336bp|location=Sequence derived from alignment at scaffold_15:558810..559145- (Nannochloropsis oceanica)
ATGGCGATTACTAGCGTGACTGCAACAAGCCCCCCCAGAAGCAGCAGGAA
GAAGCGCTCCACCAGCAGCAGCATACGCCAGCAACCTCAGACGCAGCATG
ATCCCGGTCCCGAAGGCCGTAGTTTTACGCGAGGCAGCTTGCCCCCTATT
GATGCTATCCGACGGTACAAGGAAATAGTGGCTCCACATGTGGAGTCATT
CAATTACTTTCTTGACACGGGATTGAGAGACGCGGTGGCATGCCTCAATC
CGGTCGAAGCTCGGTTAAGTGCTGACGGCGAGAGCGGACCTTTGCTGAAA
TTATGGGTGGAGGACTGTGAGGTGGGCTTCCCGACA
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Coding sequence (CDS) from alignment at scaffold_15:558810..559145-

>mRNA_6404 ID=mRNA_6404|Name=jgi.p|Nanoce1779_2|530173|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_15:558810..559145- (Nannochloropsis oceanica)
ATGGCGATTACTAGCGTGACTGCAACAAGCCCCCCCAGAAGCAGCAGGAA
GAAGCGCTCCACCAGCAGCAGCATACGCCAGCAACCTCAGACGCAGCATG
ATCCCGGTCCCGAAGGCCGTAGTTTTACGCGAGGCAGCTTGCCCCCTATT
GATGCTATCCGACGGTACAAGGAAATAGTGGCTCCACATGTGGAGTCATT
CAATTACTTTCTTGACACGGGATTGAGAGACGCGGTGGCATGCCTCAATC
CGGTCGAAGCTCGGTTAAGTGCTGACGGCGAGAGCGGACCTTTGCTGAAA
TTATGGGTGGAGGACTGTGAGGTGGGCTTCCCGACA
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Synonyms
Publications