jgi.p|Nanoce1779_2|594898, mRNA_6402 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594898
Unique Name	mRNA_6402
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2669
Alignment location	scaffold_15:551375..554043 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594984
Track	FilteredModels2
ProteinId	594898

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:551375..554043 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594898	gene_6402	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594898	mRNA_6402-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6402	CDS_6402	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:551375..554043+
coding sequence from alignment at scaffold_15:551375..554043+

mRNA sequence

>mRNA_6402 ID=mRNA_6402|Name=jgi.p|Nanoce1779_2|594898|organism=Nannochloropsis oceanica|type=mRNA|length=2669bp
AGGCAAACAACAACGCGCAAGGGGACGAGACGATCGACACGTGACCGGAC
TGCGTGGCCAGCTTGAAGCGAGAGCACGAAGGGACAAGAACGAACCATGC
AGGAGCGACAGCAGCACCATCAGCGTGGAGGAGCGGGATTGAGAGGCCAC
TGTGGGGATGATTTGGTGAGCTGTCCAAAGCGGAGGAGATGTCGGACAGC
AACAGCGTGGACAGCAGCGGCGGGATCAGCAGCACCAGCAGCAGCGGTAC
CCATCACCTTTTTCAGCAGCACGACGAGAAGAAGAAAGGGAGACGGCGGG
GAGCAGCAGCCACATCAAGAGGTTCAGGACAGGATTCAGAACAGGACGGT
TGTTCGAAAGATGGGCGGCCGCAGAGCTATGGGCGCATCAGTGTGGATAG
GCTTGTGCGTGGCGGCAGCGCTTGTCCTCTTGGTCGCTTCATCTGCTACT
GCCTTCGTCACGAGCCCAGTACCACGCGGCCCAGCAAGCAGCAGCAGGTA
TAGCGGGGAAGTGGGACGGCGGTATGTGGCTTCCAAGATTAGCTCGGGCA
GTGGTGTCATGAGCAGCCCCAAGCCCAGCGGCAGCAGCAGCAGCAGCCCT
GGCAGTTCCACCGGCAACAGCAATAGCAATAACAACAACCACCATCACGC
CGCCCAGGGAATGCATCCGCATTCGGCCACCGGCTCCCCCTCCACACTCC
AGCCATCAAAGAGCTTGCTGGCGGGCAGTGCCTTGGGTGGGGTCCAGGCT
GCTGTCGACACAAGTCGGAGCAAGAACACCGTTACCCGTGCTGTAGCTAC
CACGGCCAGCTCCGGCGGATACGTCCCCAAGCAGATGGCGCCCCAGCAGC
CCATGGCTACCTCCCAGTCTCCGCCTGTCGTTGTGAATACACCTAATGTC
ATACCCCCCTCTATACTTTGGGGGGAGGGCGGGCACATCGCCAGCTCGGG
GGTCACGGGCGGGGTGGAGGTGCCGGGGGACGCCGAGCAGCACAAGGCGC
TCCTGACTGAGGCCTACTCAGAGTGCCAGCGCATCACCTCCATCTACGCC
AAGACCTTCTACATGGGCACCTCATTCCTGGACTATGCAAAGAGGTCGGC
CACGTGGTCCATCTACGTCTGGTGCCGGCGGACGGACGATATTGTGGACT
CGCCGCGCGCCATCGTGGAGAACACCATGGACGCCGACCTGGAGACGTGG
AACCAGCGTCTGGATGATATCTGGGCGAATCGACCTTGGGACGCACTGGA
TGCCACGCTCTGCGACGTGCGGGCGCGATATCCGAGTATGAGCATCGAGC
CGTACAAGGATATGATAAAGGGCATGGTCATGGACGTGCCCGGCCTAGGG
CAGCACCGGTACGCCACCTTCGAGGAGCTCTACCTGTACTGCTATCGCGT
CGCCGGCACGGTGGGGCTTATGACGCTACCCATCATGGGCACGGCTCCAG
GGTTTACTGTTAAGCAGGCCACGGAGCCGGCTTTGGCCCTCGGTATTGCC
CTGCAGCTCACCAACATCCTTCGCGACGTAGGCGAGGACGCCATGCGGGG
CCGGATCTACCTGCCCCTGGAGGACTTGCACCGGTTTGGAGTCACAGAGG
ATCAGATTATGAATAAGATCATGAACTCCAATTACCGTGAGATGATCAAG
TTCCAGATTGCCAGGGCTCGCGTCTACTTCGACCGAGCGGAGGAAGGGAT
CATGATGCTTTCCCCCGACGCGCGATTACCGGTGCGGTCGTCTCTGGACA
TGTACCGGGAGATTCTGAATCGGATCGAGGACAACGACTACGACAATTTC
AGGCATCGAGCTTATGTGTCCAAGTTTGAAAAGCTCTTGATTTTGCCGAC
GTCGTGGATGAAGACCATGAACTTTGGAAAGTTGTTTGATTGAGATCGGA
GATATGAGAGACGACCGAGCCGAAGAGGACGAGGCCGGCTGGGGTGCGTG
TGAGATTTCTTTGTATTTTCTCTCTTTTCCTTGCCACATGTACAGCATCT
CTCAAAAAGGGCAAGAAAGGCAGGGATAGCAGCATGGAGTAGTGGCCGCC
CCCCTAAGCGAGTGACGACTAACCACCATCACTAGCCTTCAGAGGCGCAG
CAATCAGTAGCAGGGGCGGCGGTCAGGACGGCAGGGCGTGTAATATATGG
AAGGCGAAAAGAGAAATGGAGAGATGAGAAACGATGAGGTCGGAGTAGTG
TGGCAGAGAAAAGGGGTGGGGGAAGGCGAGACCGCTTGATTCCCAGGCTG
ATGGGAAGGATGACCTAGATGCAGAAGAGTGTGTGAGAAATGACCAGAGG
AGTTTAAGATCGAATGGAAGGAGAGGTGGAGGTCTATATTATACTAGGCT
AGGCGAGTACGAGATTTTCGTTTGTATTTTGTCCCGCATTCCAAACCACA
AGGAATGGGGAACTCTTACCGATTTGCTCAACTTTTGTTTGTTGATTGCG
TGGAGTAGGAGAAGAGGAAGTGACAGGGCAGGATCGATAGATAGGTGCAG
ATATCGTAGAGAAAGAAAGGCATGGAAGCTCCTTAATCCAGCACAAGATT
GTTCATGCGATACCTCTCCCCCACCTCTTTGTCTCCTCTCACCAGACATC
AACAACAATCAAAACACAGAAAACAACGAAAAAGATAGAATATAAACAAA
TAAAGACCACCAGAGAAAA

protein sequence of jgi.p|Nanoce1779_2|594898

>mRNA_6402-protein ID=mRNA_6402-protein|Name=jgi.p|Nanoce1779_2|594898|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MQERQQHHQRGGAGLRGHCGDDLVSCPKRRRCRTATAWTAAAGSAAPAAA
VPITFFSSTTRRRKGDGGEQQPHQEVQDRIQNRTVVRKMGGRRAMGASVW
IGLCVAAALVLLVASSATAFVTSPVPRGPASSSRYSGEVGRRYVASKISS
GSGVMSSPKPSGSSSSSPGSSTGNSNSNNNNHHHAAQGMHPHSATGSPST
LQPSKSLLAGSALGGVQAAVDTSRSKNTVTRAVATTASSGGYVPKQMAPQ
QPMATSQSPPVVVNTPNVIPPSILWGEGGHIASSGVTGGVEVPGDAEQHK
ALLTEAYSECQRITSIYAKTFYMGTSFLDYAKRSATWSIYVWCRRTDDIV
DSPRAIVENTMDADLETWNQRLDDIWANRPWDALDATLCDVRARYPSMSI
EPYKDMIKGMVMDVPGLGQHRYATFEELYLYCYRVAGTVGLMTLPIMGTA
PGFTVKQATEPALALGIALQLTNILRDVGEDAMRGRIYLPLEDLHRFGVT
EDQIMNKIMNSNYREMIKFQIARARVYFDRAEEGIMMLSPDARLPVRSSL
DMYREILNRIEDNDYDNFRHRAYVSKFEKLLILPTSWMKTMNFGKLFD*

mRNA from alignment at scaffold_15:551375..554043+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6402 ID=mRNA_6402|Name=jgi.p|Nanoce1779_2|594898|organism=Nannochloropsis oceanica|type=mRNA|length=2669bp|location=Sequence derived from alignment at scaffold_15:551375..554043+ (Nannochloropsis oceanica)
AGGCAAACAACAACGCGCAAGGGGACGAGACGATCGACACGTGACCGGAC
TGCGTGGCCAGCTTGAAGCGAGAGCACGAAGGGACAAGAACGAACCATGC
AGGAGCGACAGCAGCACCATCAGCGTGGAGGAGCGGGATTGAGAGGCCAC
TGTGGGGATGATTTGGTGAGCTGTCCAAAGCGGAGGAGATGTCGGACAGC
AACAGCGTGGACAGCAGCGGCGGGATCAGCAGCACCAGCAGCAGCGGTAC
CCATCACCTTTTTCAGCAGCACGACGAGAAGAAGAAAGGGAGACGGCGGG
GAGCAGCAGCCACATCAAGAGGTTCAGGACAGGATTCAGAACAGGACGGT
TGTTCGAAAGATGGGCGGCCGCAGAGCTATGGGCGCATCAGTGTGGATAG
GCTTGTGCGTGGCGGCAGCGCTTGTCCTCTTGGTCGCTTCATCTGCTACT
GCCTTCGTCACGAGCCCAGTACCACGCGGCCCAGCAAGCAGCAGCAGGTA
TAGCGGGGAAGTGGGACGGCGGTATGTGGCTTCCAAGATTAGCTCGGGCA
GTGGTGTCATGAGCAGCCCCAAGCCCAGCGGCAGCAGCAGCAGCAGCCCT
GGCAGTTCCACCGGCAACAGCAATAGCAATAACAACAACCACCATCACGC
CGCCCAGGGAATGCATCCGCATTCGGCCACCGGCTCCCCCTCCACACTCC
AGCCATCAAAGAGCTTGCTGGCGGGCAGTGCCTTGGGTGGGGTCCAGGCT
GCTGTCGACACAAGTCGGAGCAAGAACACCGTTACCCGTGCTGTAGCTAC
CACGGCCAGCTCCGGCGGATACGTCCCCAAGCAGATGGCGCCCCAGCAGC
CCATGGCTACCTCCCAGTCTCCGCCTGTCGTTGTGAATACACCTAATGTC
ATACCCCCCTCTATACTTTGGGGGGAGGGCGGGCACATCGCCAGCTCGGG
GGTCACGGGCGGGGTGGAGGTGCCGGGGGACGCCGAGCAGCACAAGGCGC
TCCTGACTGAGGCCTACTCAGAGTGCCAGCGCATCACCTCCATCTACGCC
AAGACCTTCTACATGGGCACCTCATTCCTGGACTATGCAAAGAGGTCGGC
CACGTGGTCCATCTACGTCTGGTGCCGGCGGACGGACGATATTGTGGACT
CGCCGCGCGCCATCGTGGAGAACACCATGGACGCCGACCTGGAGACGTGG
AACCAGCGTCTGGATGATATCTGGGCGAATCGACCTTGGGACGCACTGGA
TGCCACGCTCTGCGACGTGCGGGCGCGATATCCGAGTATGAGCATCGAGC
CGTACAAGGATATGATAAAGGGCATGGTCATGGACGTGCCCGGCCTAGGG
CAGCACCGGTACGCCACCTTCGAGGAGCTCTACCTGTACTGCTATCGCGT
CGCCGGCACGGTGGGGCTTATGACGCTACCCATCATGGGCACGGCTCCAG
GGTTTACTGTTAAGCAGGCCACGGAGCCGGCTTTGGCCCTCGGTATTGCC
CTGCAGCTCACCAACATCCTTCGCGACGTAGGCGAGGACGCCATGCGGGG
CCGGATCTACCTGCCCCTGGAGGACTTGCACCGGTTTGGAGTCACAGAGG
ATCAGATTATGAATAAGATCATGAACTCCAATTACCGTGAGATGATCAAG
TTCCAGATTGCCAGGGCTCGCGTCTACTTCGACCGAGCGGAGGAAGGGAT
CATGATGCTTTCCCCCGACGCGCGATTACCGGTGCGGTCGTCTCTGGACA
TGTACCGGGAGATTCTGAATCGGATCGAGGACAACGACTACGACAATTTC
AGGCATCGAGCTTATGTGTCCAAGTTTGAAAAGCTCTTGATTTTGCCGAC
GTCGTGGATGAAGACCATGAACTTTGGAAAGTTGTTTGATTGAGATCGGA
GATATGAGAGACGACCGAGCCGAAGAGGACGAGGCCGGCTGGGGTGCGTG
TGAGATTTCTTTGTATTTTCTCTCTTTTCCTTGCCACATGTACAGCATCT
CTCAAAAAGGGCAAGAAAGGCAGGGATAGCAGCATGGAGTAGTGGCCGCC
CCCCTAAGCGAGTGACGACTAACCACCATCACTAGCCTTCAGAGGCGCAG
CAATCAGTAGCAGGGGCGGCGGTCAGGACGGCAGGGCGTGTAATATATGG
AAGGCGAAAAGAGAAATGGAGAGATGAGAAACGATGAGGTCGGAGTAGTG
TGGCAGAGAAAAGGGGTGGGGGAAGGCGAGACCGCTTGATTCCCAGGCTG
ATGGGAAGGATGACCTAGATGCAGAAGAGTGTGTGAGAAATGACCAGAGG
AGTTTAAGATCGAATGGAAGGAGAGGTGGAGGTCTATATTATACTAGGCT
AGGCGAGTACGAGATTTTCGTTTGTATTTTGTCCCGCATTCCAAACCACA
AGGAATGGGGAACTCTTACCGATTTGCTCAACTTTTGTTTGTTGATTGCG
TGGAGTAGGAGAAGAGGAAGTGACAGGGCAGGATCGATAGATAGGTGCAG
ATATCGTAGAGAAAGAAAGGCATGGAAGCTCCTTAATCCAGCACAAGATT
GTTCATGCGATACCTCTCCCCCACCTCTTTGTCTCCTCTCACCAGACATC
AACAACAATCAAAACACAGAAAACAACGAAAAAGATAGAATATAAACAAA
TAAAGACCACCAGAGAAAA

Coding sequence (CDS) from alignment at scaffold_15:551375..554043+

>mRNA_6402 ID=mRNA_6402|Name=jgi.p|Nanoce1779_2|594898|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at scaffold_15:551375..554043+ (Nannochloropsis oceanica)
ATGCAGGAGCGACAGCAGCACCATCAGCGTGGAGGAGCGGGATTGAGAGG
CCACTGTGGGGATGATTTGGTGAGCTGTCCAAAGCGGAGGAGATGTCGGA
CAGCAACAGCGTGGACAGCAGCGGCGGGATCAGCAGCACCAGCAGCAGCG
GTACCCATCACCTTTTTCAGCAGCACGACGAGAAGAAGAAAGGGAGACGG
CGGGGAGCAGCAGCCACATCAAGAGGTTCAGGACAGGATTCAGAACAGGA
CGGTTGTTCGAAAGATGGGCGGCCGCAGAGCTATGGGCGCATCAGTGTGG
ATAGGCTTGTGCGTGGCGGCAGCGCTTGTCCTCTTGGTCGCTTCATCTGC
TACTGCCTTCGTCACGAGCCCAGTACCACGCGGCCCAGCAAGCAGCAGCA
GGTATAGCGGGGAAGTGGGACGGCGGTATGTGGCTTCCAAGATTAGCTCG
GGCAGTGGTGTCATGAGCAGCCCCAAGCCCAGCGGCAGCAGCAGCAGCAG
CCCTGGCAGTTCCACCGGCAACAGCAATAGCAATAACAACAACCACCATC
ACGCCGCCCAGGGAATGCATCCGCATTCGGCCACCGGCTCCCCCTCCACA
CTCCAGCCATCAAAGAGCTTGCTGGCGGGCAGTGCCTTGGGTGGGGTCCA
GGCTGCTGTCGACACAAGTCGGAGCAAGAACACCGTTACCCGTGCTGTAG
CTACCACGGCCAGCTCCGGCGGATACGTCCCCAAGCAGATGGCGCCCCAG
CAGCCCATGGCTACCTCCCAGTCTCCGCCTGTCGTTGTGAATACACCTAA
TGTCATACCCCCCTCTATACTTTGGGGGGAGGGCGGGCACATCGCCAGCT
CGGGGGTCACGGGCGGGGTGGAGGTGCCGGGGGACGCCGAGCAGCACAAG
GCGCTCCTGACTGAGGCCTACTCAGAGTGCCAGCGCATCACCTCCATCTA
CGCCAAGACCTTCTACATGGGCACCTCATTCCTGGACTATGCAAAGAGGT
CGGCCACGTGGTCCATCTACGTCTGGTGCCGGCGGACGGACGATATTGTG
GACTCGCCGCGCGCCATCGTGGAGAACACCATGGACGCCGACCTGGAGAC
GTGGAACCAGCGTCTGGATGATATCTGGGCGAATCGACCTTGGGACGCAC
TGGATGCCACGCTCTGCGACGTGCGGGCGCGATATCCGAGTATGAGCATC
GAGCCGTACAAGGATATGATAAAGGGCATGGTCATGGACGTGCCCGGCCT
AGGGCAGCACCGGTACGCCACCTTCGAGGAGCTCTACCTGTACTGCTATC
GCGTCGCCGGCACGGTGGGGCTTATGACGCTACCCATCATGGGCACGGCT
CCAGGGTTTACTGTTAAGCAGGCCACGGAGCCGGCTTTGGCCCTCGGTAT
TGCCCTGCAGCTCACCAACATCCTTCGCGACGTAGGCGAGGACGCCATGC
GGGGCCGGATCTACCTGCCCCTGGAGGACTTGCACCGGTTTGGAGTCACA
GAGGATCAGATTATGAATAAGATCATGAACTCCAATTACCGTGAGATGAT
CAAGTTCCAGATTGCCAGGGCTCGCGTCTACTTCGACCGAGCGGAGGAAG
GGATCATGATGCTTTCCCCCGACGCGCGATTACCGGTGCGGTCGTCTCTG
GACATGTACCGGGAGATTCTGAATCGGATCGAGGACAACGACTACGACAA
TTTCAGGCATCGAGCTTATGTGTCCAAGTTTGAAAAGCTCTTGATTTTGC
CGACGTCGTGGATGAAGACCATGAACTTTGGAAAGTTGTTTGATTGA

Synonyms

Publications