jgi.p|Nanoce1779_2|573615, mRNA_640 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573615
Unique NamemRNA_640
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length766
Alignment locationscaffold_2:75829..76594 -

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Properties
Property NameValue
TranscriptId573701
TrackFilteredModels2
ProteinId573615
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:75829..76594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573615gene_640Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_640CDS_640Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573615mRNA_640-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_640 ID=mRNA_640|Name=jgi.p|Nanoce1779_2|573615|organism=Nannochloropsis oceanica|type=mRNA|length=766bp
ATGGCACGGACGACGGAAACAGGAAGAGGAGGAGGAAGAGGGGGAGGGAG
GGGAAGTGGAGGAGGAGGAAGAGGAGGAAGCAGCAGGAGACCAACTGTTG
TGGGCACACCGCCGTCCACCTCCCTCCCTTCCTCTCCACTAATCCCTGTC
GCTCTACAGCGGAGCAGCTCCACCAGCATCATCTCCAGCAGCAACAGCAG
CAACAACTGTAACAACTGTAACAGCAGCAATGGCACTCAACAGCCGCAAC
AGCAACGACTTCCTCCTCCCCCCTTCCTGCTCGCCCAAGGGGGGCCTCTC
GACAAACTCTTCATCGCCCTCGGCAGCGGCGCCACTCTCTCCTTCCTCTG
GCATGTCATCAACCAGCACATTCATTCCCTCCACGAACACACGTACGCCG
CCCTGCTGGAGTGCGTTCTCACCACTCCCCGCACTCACACCCACAACCCC
CTTCCCCTCTTCTCCCGCCCCCTCCACACATCCTCCTCCTTCCATCCCTC
CGTCCTCCAGCCCTCGAAAACAATCCTCGATGACTCAGACGACATCCAAA
ATGTCATTCTTCTCTCCCTCCTCCTTAAGCTCCTGCCCTCCTTCCCTCCC
TCTCTCCAAGAGAGATTTCTTGGGGACCTCCTTCTCCTCCTGAAGCTCTC
CGACTCTAATCGTACCACAATAATCTCGGTAGCGGGATGGCAAGTGCCTC
TCTTCTCCATGGTGGCGCCTTTGATGGTAGGAGTGGATGAAGAGGAGGAG
GGGGAGGAAGAAGAGG
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protein sequence of jgi.p|Nanoce1779_2|573615

>mRNA_640-protein ID=mRNA_640-protein|Name=jgi.p|Nanoce1779_2|573615|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MARTTETGRGGGRGGGRGSGGGGRGGSSRRPTVVGTPPSTSLPSSPLIPV
ALQRSSSTSIISSSNSSNNCNNCNSSNGTQQPQQQRLPPPPFLLAQGGPL
DKLFIALGSGATLSFLWHVINQHIHSLHEHTYAALLECVLTTPRTHTHNP
LPLFSRPLHTSSSFHPSVLQPSKTILDDSDDIQNVILLSLLLKLLPSFPP
SLQERFLGDLLLLLKLSDSNRTTIISVAGWQVPLFSMVAPLMVGVDEEEE
GEEEE
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mRNA from alignment at scaffold_2:75829..76594-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_640 ID=mRNA_640|Name=jgi.p|Nanoce1779_2|573615|organism=Nannochloropsis oceanica|type=mRNA|length=766bp|location=Sequence derived from alignment at scaffold_2:75829..76594- (Nannochloropsis oceanica)
ATGGCACGGACGACGGAAACAGGAAGAGGAGGAGGAAGAGGGGGAGGGAG
GGGAAGTGGAGGAGGAGGAAGAGGAGGAAGCAGCAGGAGACCAACTGTTG
TGGGCACACCGCCGTCCACCTCCCTCCCTTCCTCTCCACTAATCCCTGTC
GCTCTACAGCGGAGCAGCTCCACCAGCATCATCTCCAGCAGCAACAGCAG
CAACAACTGTAACAACTGTAACAGCAGCAATGGCACTCAACAGCCGCAAC
AGCAACGACTTCCTCCTCCCCCCTTCCTGCTCGCCCAAGGGGGGCCTCTC
GACAAACTCTTCATCGCCCTCGGCAGCGGCGCCACTCTCTCCTTCCTCTG
GCATGTCATCAACCAGCACATTCATTCCCTCCACGAACACACGTACGCCG
CCCTGCTGGAGTGCGTTCTCACCACTCCCCGCACTCACACCCACAACCCC
CTTCCCCTCTTCTCCCGCCCCCTCCACACATCCTCCTCCTTCCATCCCTC
CGTCCTCCAGCCCTCGAAAACAATCCTCGATGACTCAGACGACATCCAAA
ATGTCATTCTTCTCTCCCTCCTCCTTAAGCTCCTGCCCTCCTTCCCTCCC
TCTCTCCAAGAGAGATTTCTTGGGGACCTCCTTCTCCTCCTGAAGCTCTC
CGACTCTAATCGTACCACAATAATCTCGGTAGCGGGATGGCAAGTGCCTC
TCTTCTCCATGGTGGCGCCTTTGATGGTAGGAGTGGATGAAGAGGAGGAG
GGGGAGGAAGAAGAGG
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Coding sequence (CDS) from alignment at scaffold_2:75829..76594-

>mRNA_640 ID=mRNA_640|Name=jgi.p|Nanoce1779_2|573615|organism=Nannochloropsis oceanica|type=CDS|length=766bp|location=Sequence derived from alignment at scaffold_2:75829..76594- (Nannochloropsis oceanica)
ATGGCACGGACGACGGAAACAGGAAGAGGAGGAGGAAGAGGGGGAGGGAG
GGGAAGTGGAGGAGGAGGAAGAGGAGGAAGCAGCAGGAGACCAACTGTTG
TGGGCACACCGCCGTCCACCTCCCTCCCTTCCTCTCCACTAATCCCTGTC
GCTCTACAGCGGAGCAGCTCCACCAGCATCATCTCCAGCAGCAACAGCAG
CAACAACTGTAACAACTGTAACAGCAGCAATGGCACTCAACAGCCGCAAC
AGCAACGACTTCCTCCTCCCCCCTTCCTGCTCGCCCAAGGGGGGCCTCTC
GACAAACTCTTCATCGCCCTCGGCAGCGGCGCCACTCTCTCCTTCCTCTG
GCATGTCATCAACCAGCACATTCATTCCCTCCACGAACACACGTACGCCG
CCCTGCTGGAGTGCGTTCTCACCACTCCCCGCACTCACACCCACAACCCC
CTTCCCCTCTTCTCCCGCCCCCTCCACACATCCTCCTCCTTCCATCCCTC
CGTCCTCCAGCCCTCGAAAACAATCCTCGATGACTCAGACGACATCCAAA
ATGTCATTCTTCTCTCCCTCCTCCTTAAGCTCCTGCCCTCCTTCCCTCCC
TCTCTCCAAGAGAGATTTCTTGGGGACCTCCTTCTCCTCCTGAAGCTCTC
CGACTCTAATCGTACCACAATAATCTCGGTAGCGGGATGGCAAGTGCCTC
TCTTCTCCATGGTGGCGCCTTTGATGGTAGGAGTGGATGAAGAGGAGGAG
GGGGAGGAAGAAGAGG
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Synonyms
Publications