jgi.p|Nanoce1779_2|576087, mRNA_64 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576087
Unique NamemRNA_64
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length915
Alignment locationscaffold_3:176428..177619 -

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Properties
Property NameValue
TranscriptId576173
TrackFilteredModels2
ProteinId576087
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:176428..177619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576087gene_64Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576087mRNA_64-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_64CDS_64Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_64 ID=mRNA_64|Name=jgi.p|Nanoce1779_2|576087|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ACAGGCAACATCGCCGCCGTCTTGAGCAGCAAGCAAGCAGCCTTGCTCTC
CCCCACCTCGGTCACCCTACACCCATTCACTCACTCCCGCAGTCATATCC
ACCACATGCAACAAGAAGCCATGGAGGTGGAGGACGACGGCGACACAGGC
TATGCCAAGCTCATCGGCCGCATATTTTACGTCGACGATGAAGCACGGGC
CAAAGGCGTCAGAGAAGAAGATTTCGACGCCATCATCACTGCACTGCCCG
CACGCCTGGGCCGGCACCAGAATCAACCCCCCCCTATGATGAAAGGAGAG
GAGGGGGGAGGGAAGGAAGGGGAGGGGGAAGGATGCTTCGTGGCCTTGGG
AACCACCAAGAAGGTATCGAGGCATCACGCGACGATAAATTGGGACTTTA
TTAAGGGGTGCTACGTCATTCGGTGTTTTTCGAAGAATGGGATGGTACGG
CTGGGGGGAGACCGCGGCAAGAAGATCGATGTCTCTCGTGGGTCAATAGG
AAAGAAGGCCGAATGCACGCGAATACTCCTATCTCATCATTCATCTTCCT
CCCTTCTTTCTTCCTTCCTTTCTTCGATCGTGAGCCGAACGCACTCCGAG
ACCGTGTGACAAGCCGCCCCTCCCTTCCTCCTTCCCTCCCTCCCTCCTTT
CCTTGACCCAAACCTTTCCTCTCTCATTCTCCCTCCGTCCACGCAGACCG
TCAACAAGAAGCACTACGCAACGGACGAGCAAGCAATTCTCTCCGACCGC
TCAGCCGTCCGAATGGGCCCGGTCAACTTCTATTTCCACCTGCCACCAAC
AGGGGGGGAAGGGGAGGGAGGAAGGGAGGAAGGTTTGATGCGGAGAGAGG
AGGTGTACGAGGAAGACGGGGAGCAGCCGCAGCAGAAGCAGGGGAGGAAA
GGAGGGGAAAAGGGG
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protein sequence of jgi.p|Nanoce1779_2|576087

>mRNA_64-protein ID=mRNA_64-protein|Name=jgi.p|Nanoce1779_2|576087|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MQQEAMEVEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPAR
LGRHQNQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIK
GCYVIRCFSKNGMVRLGGDRGKKIDVSRGSIGKKAECTRILLSHHSSSSL
LSSFLSSIVSRTHSETV*
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mRNA from alignment at scaffold_3:176428..177619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_64 ID=mRNA_64|Name=jgi.p|Nanoce1779_2|576087|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp|location=Sequence derived from alignment at scaffold_3:176428..177619- (Nannochloropsis oceanica)
ACAGGCAACATCGCCGCCGTCTTGAGCAGCAAGCAAGCAGCCTTGCTCTC
CCCCACCTCGGTCACCCTACACCCATTCACTCACTCCCGCAGTCATATCC
ACCACATGCAACAAGAAGCCATGGAGGTGGAGGACGACGGCGACACAGGT
AATCACTCTAGTGTGACTTCTACTTTTTAGCCCTCTACCTTCCACCCTCC
CTCTCTCGCAACCTCTGTTCTCCATACTCCACCTCTGTGCCTCCTCGATT
CCTCCCTCTCTTTCCATTTCGCCATTCAATAAGCACCTCAGAATTTCTGC
CTTGTCCTTTTTGATAAACATGCCGTTCATGATGCGGTCGATAATTTCTC
TCTTGTACTGTCTCCAACTCACTCCCTTGCCTCCCTCCCCCCCTTTGCCG
GTTCTCTTTCCCTCCCTCCTCCAAGGCTATGCCAAGCTCATCGGCCGCAT
ATTTTACGTCGACGATGAAGCACGGGCCAAAGGCGTCAGAGAAGAAGATT
TCGACGCCATCATCACTGCACTGCCCGCACGCCTGGGCCGGCACCAGAAT
CAACCCCCCCCTATGATGAAAGGAGAGGAGGGGGGAGGGAAGGAAGGGGA
GGGGGAAGGATGCTTCGTGGCCTTGGGAACCACCAAGAAGGTATCGAGGC
ATCACGCGACGATAAATTGGGACTTTATTAAGGGGTGCTACGTCATTCGG
TGTTTTTCGAAGAATGGGATGGTACGGCTGGGGGGAGACCGCGGCAAGAA
GATCGATGTCTCTCGTGGGTCAATAGGAAAGAAGGCCGAATGCACGCGAA
TACTCCTATCTCATCATTCATCTTCCTCCCTTCTTTCTTCCTTCCTTTCT
TCGATCGTGAGCCGAACGCACTCCGAGACCGTGTGACAAGCCGCCCCTCC
CTTCCTCCTTCCCTCCCTCCCTCCTTTCCTTGACCCAAACCTTTCCTCTC
TCATTCTCCCTCCGTCCACGCAGACCGTCAACAAGAAGCACTACGCAACG
GACGAGCAAGCAATTCTCTCCGACCGCTCAGCCGTCCGAATGGGCCCGGT
CAACTTCTATTTCCACCTGCCACCAACAGGGGGGGAAGGGGAGGGAGGAA
GGGAGGAAGGTTTGATGCGGAGAGAGGAGGTGTACGAGGAAGACGGGGAG
CAGCCGCAGCAGAAGCAGGGGAGGAAAGGAGGGGAAAAGGGG
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Coding sequence (CDS) from alignment at scaffold_3:176428..177619-

>mRNA_64 ID=mRNA_64|Name=jgi.p|Nanoce1779_2|576087|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_3:176428..177619- (Nannochloropsis oceanica)
GCTATGCCAAGCTCATCGGCCGCATATTTTACGTCGACGATGAAGCACGG
GCCAAAGGCGTCAGAGAAGAAGATTTCGACGCCATCATCACTGCACTGCC
CGCACGCCTGGGCCGGCACCAGAATCAACCCCCCCCTATGATGAAAGGAG
AGGAGGGGGGAGGGAAGGAAGGGGAGGGGGAAGGATGCTTCGTGGCCTTG
GGAACCACCAAGAAGGTATCGAGGCATCACGCGACGATAAATTGGGACTT
TATTAAGGGGTGCTACGTCATTCGGTGTTTTTCGAAGAATGGGATGGTAC
GGCTGGGGGGAGACCGCGGCAAGAAGATCGATGTCTCTCGTGGGTCAATA
GGAAAGAAGGCCGAATGCACGCGAATACTCCTATCTCATCATTCATCTTC
CTCCCTTCTTTCTTCCTTCCTTTCTTCGATCGTGAGCCGAACGCACTCCG
AGACCGTGTGAATGCAACAAGAAGCCATGGAGGTGGAGGACGACGGCGAC
ACAGGCTATGCCAAGCTCATCGGCCGCATATTTTACGTCGACGATGAAGC
ACGGGCCAAAGGCGTCAGAGAAGAAGATTTCGACGCCATCATCACTGCAC
TGCCCGCACGCCTGGGCCGGCACCAGAATCAACCCCCCCCTATGATGAAA
GGAGAGGAGGGGGGAGGGAAGGAAGGGGAGGGGGAAGGATGCTTCGTGGC
CTTGGGAACCACCAAGAAGGTATCGAGGCATCACGCGACGATAAATTGGG
ACTTTATTAAGGGGTGCTACGTCATTCGGTGTTTTTCGAAGAATGGGATG
GTACGGCTGGGGGGAGACCGCGGCAAGAAGATCGATGTCTCTCGTGGGTC
AATAGGAAAGAAGGCCGAATGCACGCGAATACTCCTATCTCATCATTCAT
CTTCCTCCCTTCTTTCTTCCTTCCTTTCTTCGATCGTGAGCCGAACGCAC
TCCGAGACCGTGTGAATGCAACAAGAAGCCATGGAGGTGGAGGACGACGG
CGACACAG
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Synonyms
Publications