jgi.p|Nanoce1779_2|594883, mRNA_6398 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594883
Unique NamemRNA_6398
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1131
Alignment locationscaffold_15:539028..540468 -

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Properties
Property NameValue
TranscriptId594969
TrackFilteredModels2
ProteinId594883
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:539028..540468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594883gene_6398Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594883mRNA_6398-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6398CDS_6398Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6398 ID=mRNA_6398|Name=jgi.p|Nanoce1779_2|594883|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
CAGACAGGCATCATGCGCTTCTTCCTAGCGGGCGTGCTGCTCTTAATGCT
TCCGTTTTTGGCGCTGGGTTTCGTGCCACGCCTGTCCAAGAAGGGCCTAG
CAATCAAGATTGGCAGCCCTGCATTGAAGGCAAGACTCGCCGGTGTGACG
TCCTTGTCGGCCAAGATGAGCAAGAAGGAGGAGGAGGAGGAGGAGAAGGA
GATCCAGGAGGAGATCGAGCGGAAGATGCGAGGCATGTTTAATGCGGACG
GTAAGGCCTATGCCCCTTGGATGATGAACCAGATCGACGTTGAGGCCAGC
GCTCGCGCGATTCGGGCCCGCAAGCGTCGAGAAAGGGAGCAGGCCGAAGC
TGTTGACACGGGTGATGTGTTTGATCCACAAGGGAAGGAGGCCTCGGTGG
GCTTGAAGTACCGCGTAATAAACGAGCGGGACGTGGAGCTTGGGTGGCTA
ACCGGCGAGGAGAAGGACAATGTCGGGTACATCATCTTCCGGAAGCGCGC
CGACGCACCTGGGGCTGAATTTGAGGAGATCGCTTCGTTCAAGACCTTCC
CCCCGCTCAATACCAAGGGCCCTGAAGGAGGGTTCTACTCGTATGTGGAC
GAGGGCGTGGAGCCGGGACAGTACGTGTATAGGATCACGGACCAAGACAA
GGCTAGCAAGCGGACGCTGCTGTGTCAGAGCGGGGTGGAAGTGCAAGCCC
CCGGGGAGAAGCTCCGAAATACTCTTGTGCTGGCTTTTTTCGGAGCCCTG
GTGTTGGGCGGGGTGGTGGCCTCGTTCTTGTACGAGCCTTTGCAGTAGGC
AAATGAAATGAAGGATGGGGAGAGGAAGAGAAAATGGGCGTGCGTAATCA
ATAGTTCTGAATTGTCCGTGTATTGGGTGTGGGTCAAGAGAGGGATAACA
GGGGGAGAGCCCCGTGGTTGTGATGTCCGTAAACGAGGAAGGAAGCCCTG
TCGGTGGGTGCAGGTGTTTTGGATTTTGTGGTGGCTCCTTTGCGGACCTG
CTTTGTTTCCTCACAGAAGGAGCAATGTCTGAGGACCGGTGCTGCTTCTG
ATGCAAAACAAGAATAAAAAGCATGAGAGAAAGAAGGAAATGGAGGCGAC
TTACGAGAGGTAAAATGAATGATTGTGCCCG
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protein sequence of jgi.p|Nanoce1779_2|594883

>mRNA_6398-protein ID=mRNA_6398-protein|Name=jgi.p|Nanoce1779_2|594883|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRFFLAGVLLLMLPFLALGFVPRLSKKGLAIKIGSPALKARLAGVTSLSA
KMSKKEEEEEEKEIQEEIERKMRGMFNADGKAYAPWMMNQIDVEASARAI
RARKRREREQAEAVDTGDVFDPQGKEASVGLKYRVINERDVELGWLTGEE
KDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVE
PGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGG
VVASFLYEPLQ*
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mRNA from alignment at scaffold_15:539028..540468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6398 ID=mRNA_6398|Name=jgi.p|Nanoce1779_2|594883|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at scaffold_15:539028..540468- (Nannochloropsis oceanica)
CAGACAGGCATCATGCGCTTCTTCCTAGCGGGCGTGCTGCTCTTAATGCT
TCCGTTTTTGGCGCTGGGTTTCGTGCCACGCCTGTCCAAGAAGGGCCTAG
CAATCAAGGTAAATGAGGCATTGACTTGAAGGGGGCTGCGGGCTAAGGGA
AGGATAATGTCAGTGAGGTATAGAAAATGTGTGTCGAAGCCCGTCGTCTC
TGACACCTCTCTACCCCCGCCCTCGTTGCACGCCTTCTCAAACCTCAAAG
ATTGGCAGCCCTGCATTGAAGGCAAGACTCGCCGGTGTGACGTCCTTGTC
GGCCAAGATGAGCAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGATCCAGG
AGGAGATCGAGCGGAAGATGCGAGGCATGTTTAATGCGGACGGTAAGGCC
TATGCCCCTTGGATGATGAACCAGATCGACGTTGAGGCCAGCGCTCGCGC
GATTCGGGCCCGCAAGCGTCGAGAAAGGGAGCAGGCCGAAGCTGTTGACA
CGGGTGATGTGTTTGATCCACAAGGGAAGGAGGCCTCGGTGGGCTTGAAG
TACCGCGTAATAAACGAGCGGGACGTGGAGCTTGGGGTAAGTTGGGGAGA
AACAAAAGGAGATTTGACAGAGGAATGCGTAACGCTAAGTGTACACTTCT
TTTTTGTGTGAAGCGTGGAATAGTCTGTCGATGATTTTCCTCTTACCAAG
ACTGTACTACTTTTCCTTACTCACTCCCGACCCACCCCCCTACCAATCCC
GCAGTGGCTAACCGGCGAGGAGAAGGACAATGTCGGGTACATCATCTTCC
GGAAGCGCGCCGACGCACCTGGGGCTGAATTTGAGGAGATCGCTTCGTTC
AAGACCTTCCCCCCGCTCAATACCAAGGGCCCTGAAGGAGGGTTCTACTC
GTATGTGGACGAGGGCGTGGAGCCGGGACAGTACGTGTATAGGATCACGG
ACCAAGACAAGGCTAGCAAGCGGACGCTGCTGTGTCAGAGCGGGGTGGAA
GTGCAAGCCCCCGGGGAGAAGCTCCGAAATACTCTTGTGCTGGCTTTTTT
CGGAGCCCTGGTGTTGGGCGGGGTGGTGGCCTCGTTCTTGTACGAGCCTT
TGCAGTAGGCAAATGAAATGAAGGATGGGGAGAGGAAGAGAAAATGGGCG
TGCGTAATCAATAGTTCTGAATTGTCCGTGTATTGGGTGTGGGTCAAGAG
AGGGATAACAGGGGGAGAGCCCCGTGGTTGTGATGTCCGTAAACGAGGAA
GGAAGCCCTGTCGGTGGGTGCAGGTGTTTTGGATTTTGTGGTGGCTCCTT
TGCGGACCTGCTTTGTTTCCTCACAGAAGGAGCAATGTCTGAGGACCGGT
GCTGCTTCTGATGCAAAACAAGAATAAAAAGCATGAGAGAAAGAAGGAAA
TGGAGGCGACTTACGAGAGGTAAAATGAATGATTGTGCCCG
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Coding sequence (CDS) from alignment at scaffold_15:539028..540468-

>mRNA_6398 ID=mRNA_6398|Name=jgi.p|Nanoce1779_2|594883|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_15:539028..540468- (Nannochloropsis oceanica)
TGGCTAACCGGCGAGGAGAAGGACAATGTCGGGTACATCATCTTCCGGAA
GCGCGCCGACGCACCTGGGGCTGAATTTGAGGAGATCGCTTCGTTCAAGA
CCTTCCCCCCGCTCAATACCAAGGGCCCTGAAGGAGGGTTCTACTCGTAT
GTGGACGAGGGCGTGGAGCCGGGACAGTACGTGTATAGGATCACGGACCA
AGACAAGGCTAGCAAGCGGACGCTGCTGTGTCAGAGCGGGGTGGAAGTGC
AAGCCCCCGGGGAGAAGCTCCGAAATACTCTTGTGCTGGCTTTTTTCGGA
GCCCTGGTGTTGGGCGGGGTGGTGGCCTCGTTCTTGTACGAGCCTTTGCA
GTAGATTGGCAGCCCTGCATTGAAGGCAAGACTCGCCGGTGTGACGTCCT
TGTCGGCCAAGATGAGCAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGATC
CAGGAGGAGATCGAGCGGAAGATGCGAGGCATGTTTAATGCGGACGGTAA
GGCCTATGCCCCTTGGATGATGAACCAGATCGACGTTGAGGCCAGCGCTC
GCGCGATTCGGGCCCGCAAGCGTCGAGAAAGGGAGCAGGCCGAAGCTGTT
GACACGGGTGATGTGTTTGATCCACAAGGGAAGGAGGCCTCGGTGGGCTT
GAAGTACCGCGTAATAAACGAGCGGGACGTGGAGCTTGGGATGCGCTTCT
TCCTAGCGGGCGTGCTGCTCTTAATGCTTCCGTTTTTGGCGCTGGGTTTC
GTGCCACGCCTGTCCAAGAAGGGCCTAGCAATCAAGTGGCTAACCGGCGA
GGAGAAGGACAATGTCGGGTACATCATCTTCCGGAAGCGCGCCGACGCAC
CTGGGGCTGAATTTGAGGAGATCGCTTCGTTCAAGACCTTCCCCCCGCTC
AATACCAAGGGCCCTGAAGGAGGGTTCTACTCGTATGTGGACGAGGGCGT
GGAGCCGGGACAGTACGTGTATAGGATCACGGACCAAGACAAGGCTAGCA
AGCGGACGCTGCTGTGTCAGAGCGGGGTGGAAGTGCAAGCCCCCGGGGAG
AAGCTCCGAAATACTCTTGTGCTGGCTTTTTTCGGAGCCCTGGTGTTGGG
CGGGGTGGTGGCCTCGTTCTTGTACGAGCCTTTGCAGTAGATTGGCAGCC
CTGCATTGAAGGCAAGACTCGCCGGTGTGACGTCCTTGTCGGCCAAGATG
AGCAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGATCCAGGAGGAGATCGA
GCGGAAGATGCGAGGCATGTTTAATGCGGACGGTAAGGCCTATGCCCCTT
GGATGATGAACCAGATCGACGTTGAGGCCAGCGCTCGCGCGATTCGGGCC
CGCAAGCGTCGAGAAAGGGAGCAGGCCGAAGCTGTTGACACGGGTGATGT
GTTTGATCCACAAGGGAAGGAGGCCTCGGTGGGCTTGAAGTACCGCGTAA
TAAACGAGCGGGACGTGGAGCTTGGGATGCGCTTCTTCCTAGCGGGCGTG
CTGCTCTTAATGCTTCCGTTTTTGGCGCTGGGTTTCGTGCCACGCCTGTC
CAAGAAGGGCCTAGCAATCAAGTGGCTAACCGGCGAGGAGAAGGACAATG
TCGGGTACATCATCTTCCGGAAGCGCGCCGACGCACCTGGGGCTGAATTT
GAGGAGATCGCTTCGTTCAAGACCTTCCCCCCGCTCAATACCAAGGGCCC
TGAAGGAGGGTTCTACTCGTATGTGGACGAGGGCGTGGAGCCGGGACAGT
ACGTGTATAGGATCACGGACCAAGACAAGGCTAGCAAGCGGACGCTGCTG
TGTCAGAGCGGGGTGGAAGTGCAAGCCCCCGGGGAGAAGCTCCGAAATAC
TCTTGTGCTGGCTTTTTTCGGAGCCCTGGTGTTGGGCGGGGTGGTGGCCT
CGTTCTTGTACGAGCCTTTGCAGTAGATTGGCAGCCCTGCATTGAAGGCA
AGACTCGCCGGTGTGACGTCCTTGTCGGCCAAGATGAGCAAGAAGGAGGA
GGAGGAGGAGGAGAAGGAGATCCAGGAGGAGATCGAGCGGAAGATGCGAG
GCATGTTTAATGCGGACGGTAAGGCCTATGCCCCTTGGATGATGAACCAG
ATCGACGTTGAGGCCAGCGCTCGCGCGATTCGGGCCCGCAAGCGTCGAGA
AAGGGAGCAGGCCGAAGCTGTTGACACGGGTGATGTGTTTGATCCACAAG
GGAAGGAGGCCTCGGTGGGCTTGAAGTACCGCGTAATAAACGAGCGGGAC
GTGGAGCTTGGGATGCGCTTCTTCCTAGCGGGCGTGCTGCTCTTAATGCT
TCCGTTTTTGGCGCTGGGTTTCGTGCCACGCCTGTCCAAGAAGGGCCTAG
CAATCAAG
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Synonyms
Publications