jgi.p|Nanoce1779_2|594875, mRNA_6397 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594875
Unique NamemRNA_6397
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length949
Alignment locationscaffold_15:536876..537824 -

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Properties
Property NameValue
TranscriptId594961
TrackFilteredModels2
ProteinId594875
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:536876..537824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594875gene_6397Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594875mRNA_6397-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6397CDS_6397Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6397 ID=mRNA_6397|Name=jgi.p|Nanoce1779_2|594875|organism=Nannochloropsis oceanica|type=mRNA|length=949bp
AACAGCGGCCGACAAAAGTGACCTCCTACCTGTATATACCATGTTTCCTT
CGACCCCTCCCTCTGCCAGCCCTGCTGTGGCAGCCGCTCTGGCCTATGTG
GAGCAGCATTGCAAAGGCGTTGATGCTTCGCATGATCTGAGCCATATTCA
TCGAGTACTGGCCTTGGCGGACCGAATTGCCCGCGCGGAAGGGCTCACAG
GTGAGGAATTGCAGACCGTTTGGTTGTGTGCGACCCTCCATGACATTGGA
GACGCAAAGTATGTGCAGGACGGTGCCGACGTCTTGAAGCAAGCTTTGGA
GCACCTCGTTGCAGGAGGATATATCACGATCAAGCAAACGGAACGCATCC
ACGCAGTGGTTGCACGGGTGAGCTTCCGAGAAGAACTTGCCGGTGGGCTG
TACAAACCAGAGGATTTGCTTACCTACCCCGAACTTGGGCCTGTCAAAGA
TGCAGATCAACTAGATGCTATTGGTGCATTGGGAATTGCGAGGACATTTG
CATTTGGTGGGGCGCGAGGTCGGGCATTCTATGACATGGAGGTCTTAGCT
GCGGAAAAAAAGCGTGCGGAGGTCACGGGCAACAGCATAAGCGGTCGTAC
CGAACAGCTGCCTACGTCCAAGGAGGCATATACCTCATCGGCAGCGTGCG
AGCAGGGCAAGGAAAAAGCCGGGGACGCATTGACACATTTCGGAGAGAAA
CTCTTGCATCTGGCAAAAAGAATGAAAACCAGGGAAGGACATGTGTTGGC
CAAGTCCCGTCATGCATTCATGGAGGAGTTTCTGGCACAGTTCGTTGAAG
AGGTGTGGGGAGAGAGATAGCAGTATTTCGCAAAAGAAATGATGAATAAA
TTGTAAAATACAGTATCATAAGTGTAAGTTGCAGGTAAGAGAGATTGTCC
TGATGAGCAACGAACGGAGCGCGCAAAAGAACAAACAATGGTAGAAGAA
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protein sequence of jgi.p|Nanoce1779_2|594875

>mRNA_6397-protein ID=mRNA_6397-protein|Name=jgi.p|Nanoce1779_2|594875|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MFPSTPPSASPAVAAALAYVEQHCKGVDASHDLSHIHRVLALADRIARAE
GLTGEELQTVWLCATLHDIGDAKYVQDGADVLKQALEHLVAGGYITIKQT
ERIHAVVARVSFREELAGGLYKPEDLLTYPELGPVKDADQLDAIGALGIA
RTFAFGGARGRAFYDMEVLAAEKKRAEVTGNSISGRTEQLPTSKEAYTSS
AACEQGKEKAGDALTHFGEKLLHLAKRMKTREGHVLAKSRHAFMEEFLAQ
FVEEVWGER*
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mRNA from alignment at scaffold_15:536876..537824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6397 ID=mRNA_6397|Name=jgi.p|Nanoce1779_2|594875|organism=Nannochloropsis oceanica|type=mRNA|length=949bp|location=Sequence derived from alignment at scaffold_15:536876..537824- (Nannochloropsis oceanica)
AACAGCGGCCGACAAAAGTGACCTCCTACCTGTATATACCATGTTTCCTT
CGACCCCTCCCTCTGCCAGCCCTGCTGTGGCAGCCGCTCTGGCCTATGTG
GAGCAGCATTGCAAAGGCGTTGATGCTTCGCATGATCTGAGCCATATTCA
TCGAGTACTGGCCTTGGCGGACCGAATTGCCCGCGCGGAAGGGCTCACAG
GTGAGGAATTGCAGACCGTTTGGTTGTGTGCGACCCTCCATGACATTGGA
GACGCAAAGTATGTGCAGGACGGTGCCGACGTCTTGAAGCAAGCTTTGGA
GCACCTCGTTGCAGGAGGATATATCACGATCAAGCAAACGGAACGCATCC
ACGCAGTGGTTGCACGGGTGAGCTTCCGAGAAGAACTTGCCGGTGGGCTG
TACAAACCAGAGGATTTGCTTACCTACCCCGAACTTGGGCCTGTCAAAGA
TGCAGATCAACTAGATGCTATTGGTGCATTGGGAATTGCGAGGACATTTG
CATTTGGTGGGGCGCGAGGTCGGGCATTCTATGACATGGAGGTCTTAGCT
GCGGAAAAAAAGCGTGCGGAGGTCACGGGCAACAGCATAAGCGGTCGTAC
CGAACAGCTGCCTACGTCCAAGGAGGCATATACCTCATCGGCAGCGTGCG
AGCAGGGCAAGGAAAAAGCCGGGGACGCATTGACACATTTCGGAGAGAAA
CTCTTGCATCTGGCAAAAAGAATGAAAACCAGGGAAGGACATGTGTTGGC
CAAGTCCCGTCATGCATTCATGGAGGAGTTTCTGGCACAGTTCGTTGAAG
AGGTGTGGGGAGAGAGATAGCAGTATTTCGCAAAAGAAATGATGAATAAA
TTGTAAAATACAGTATCATAAGTGTAAGTTGCAGGTAAGAGAGATTGTCC
TGATGAGCAACGAACGGAGCGCGCAAAAGAACAAACAATGGTAGAAGAA
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Coding sequence (CDS) from alignment at scaffold_15:536876..537824-

>mRNA_6397 ID=mRNA_6397|Name=jgi.p|Nanoce1779_2|594875|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_15:536876..537824- (Nannochloropsis oceanica)
ATGTTTCCTTCGACCCCTCCCTCTGCCAGCCCTGCTGTGGCAGCCGCTCT
GGCCTATGTGGAGCAGCATTGCAAAGGCGTTGATGCTTCGCATGATCTGA
GCCATATTCATCGAGTACTGGCCTTGGCGGACCGAATTGCCCGCGCGGAA
GGGCTCACAGGTGAGGAATTGCAGACCGTTTGGTTGTGTGCGACCCTCCA
TGACATTGGAGACGCAAAGTATGTGCAGGACGGTGCCGACGTCTTGAAGC
AAGCTTTGGAGCACCTCGTTGCAGGAGGATATATCACGATCAAGCAAACG
GAACGCATCCACGCAGTGGTTGCACGGGTGAGCTTCCGAGAAGAACTTGC
CGGTGGGCTGTACAAACCAGAGGATTTGCTTACCTACCCCGAACTTGGGC
CTGTCAAAGATGCAGATCAACTAGATGCTATTGGTGCATTGGGAATTGCG
AGGACATTTGCATTTGGTGGGGCGCGAGGTCGGGCATTCTATGACATGGA
GGTCTTAGCTGCGGAAAAAAAGCGTGCGGAGGTCACGGGCAACAGCATAA
GCGGTCGTACCGAACAGCTGCCTACGTCCAAGGAGGCATATACCTCATCG
GCAGCGTGCGAGCAGGGCAAGGAAAAAGCCGGGGACGCATTGACACATTT
CGGAGAGAAACTCTTGCATCTGGCAAAAAGAATGAAAACCAGGGAAGGAC
ATGTGTTGGCCAAGTCCCGTCATGCATTCATGGAGGAGTTTCTGGCACAG
TTCGTTGAAGAGGTGTGGGGAGAGAGATAG
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Synonyms
Publications