jgi.p|Nanoce1779_2|594874, mRNA_6396 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594874
Unique Name	mRNA_6396
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1770
Alignment location	scaffold_15:535080..536849 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594960
Track	FilteredModels2
ProteinId	594874

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:535080..536849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594874	gene_6396	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594874	mRNA_6396-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6396	CDS_6396	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:535080..536849+
coding sequence from alignment at scaffold_15:535080..536849+

mRNA sequence

>mRNA_6396 ID=mRNA_6396|Name=jgi.p|Nanoce1779_2|594874|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp
CAGTCGCGCACTTCGTACAGAGTTACTCAAACCACACTTTCTGAGTCTTC
GACCATGGCTGACACCACTCACGCCGCCGCCCCTGGTTTCATGGCCCCCG
TCGACCTGGAAATGGACCCCGTTGCCTCCGAGGCCCCGCATGAGGCAAAC
GCCCCAGGTTTCGAGGCCCCTCCCACCAGCCGCAAGCTCCAGTCCCTGGA
CGACTACAAGCAGTACTTTATGGCAGAAATGAGCCACCCTACTTTCACAC
AATCGGTTATTGCCGAGTGGTGGGCGACGACACTCTTCCTCTTCTTTTTG
ATCCTGAGCTGCTTGCCTGGGGCTAACGACGGGCAGGAGGTCTTCCGCAT
TGGCATTGTGGCCGGTCTCATGATCACCATCCTGGTGTACGCGTTCTATG
CCGTCAGTGGCGGGAATATAAATCCTGCCGTCTCTCTGGGCCTAGCCTTG
TCGGGGCGCATGACGGCTCCTCGTGCTATTTTTTACATCGCGGCGCAGAT
TATCGGTGCCATTACCGGGACGGCCATGGCCAAGGTGGTTAGCCCAACGG
CCTTCAATCTGGGCAAAGGTGGAATGAACGCGCTGCAAGTGCTAAATGTC
GGGGATGATATTGTGACGATCACTGCAGGGCAGGCGTTTTTTGGTGAGGT
GATGGGCAGCATGCTTCTGGTGTTGGCTGTCTTGTTTTGCACGGACACGG
CCCGTTCGATCGAGCACCCTCACATGGTGGCCTTAATCCCCGTAGAGATC
GGCTTTGTCGTGCTCCTCTGCCACATCGCCCTCATTCCCATTGACGGCTG
TGGCATCAACCCCGCGCGTTCCATCGGCTCGGCCGCCATTTATGGCTCCA
ACCTCGATCTCTGGATCTTCGTCTGGGCGCCCGTGGTCGGGGCGATCTTC
GCCGCCGTCACCTATCGTTTCATCTTTTCCCCTACAGAGGTATTCAACGA
TTATTTCAAGCCCAGCAATGTCGTGGACCGAGCATCCAAGCGCCTGCGTA
CCCTCTCGGGGCAGGGCAGTGGGATGGGCCAGTAAGAAAGACGTGAATGA
GACAGGGTAATGGAAGGAGGTGAGAGGTAGGGTGTCATTTTTTCTGGCTC
TTTTTTGTTTCGTTACTCTCGGGTTGTTCATGTGTCGTCTTAGTCGATCG
TGAGGGATGAGAAGGCCTTGGGAAAGCATGAGGGAAGAACGGGAAGCACT
GAAAGGAAGGGAGAACTTGGAGCAACAAGGAGACAAAGAAGTAGAGGGAC
AGAGGGAGTGAATGAGAAAAACAAAAAGGCAAACACACACACATTTACAC
TCACACTGAGATAGAGAAATCTCTATAAAAAGATATGATTGTAGTGTGTG
AACATAAAATATTGTTCAGTGTGCATGTGTGGGCAGTGTCTGAGTAAGCA
GACAGATGATTGTATGTGTGAATGAGGAAAATGCGAATGATCTTCATTTT
GTCTATCTTTCTCTTTCTTTCCAAATTAGGGGTATGGAGAAAATGAAAAG
GAGCTCCAGCGACCGTCTCAGTCGATGTGTACAACTGACAACAAAGTTAA
GATGAGGAAAGAATAAGCTTGTGCTGCTGCTGCGAGTAGGTCTTGGCTTG
AAAATACATTGATGGTGACCCGAGTGCACAGGCAGCAACAGCCAGCACTT
TAAGATACACACAATGAATGGGTAAAATGACACCATCAACTGTGCCACCT
TATCACCTACATATTAGTCATCAAGAAAACATTAATGGTGCTAAAAGAAG
CAAAAAGGTGCGTTACGGAT

protein sequence of jgi.p|Nanoce1779_2|594874

>mRNA_6396-protein ID=mRNA_6396-protein|Name=jgi.p|Nanoce1779_2|594874|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MADTTHAAAPGFMAPVDLEMDPVASEAPHEANAPGFEAPPTSRKLQSLDD
YKQYFMAEMSHPTFTQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIG
IVAGLMITILVYAFYAVSGGNINPAVSLGLALSGRMTAPRAIFYIAAQII
GAITGTAMAKVVSPTAFNLGKGGMNALQVLNVGDDIVTITAGQAFFGEVM
GSMLLVLAVLFCTDTARSIEHPHMVALIPVEIGFVVLLCHIALIPIDGCG
INPARSIGSAAIYGSNLDLWIFVWAPVVGAIFAAVTYRFIFSPTEVFNDY
FKPSNVVDRASKRLRTLSGQGSGMGQ*

mRNA from alignment at scaffold_15:535080..536849+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6396 ID=mRNA_6396|Name=jgi.p|Nanoce1779_2|594874|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at scaffold_15:535080..536849+ (Nannochloropsis oceanica)
CAGTCGCGCACTTCGTACAGAGTTACTCAAACCACACTTTCTGAGTCTTC
GACCATGGCTGACACCACTCACGCCGCCGCCCCTGGTTTCATGGCCCCCG
TCGACCTGGAAATGGACCCCGTTGCCTCCGAGGCCCCGCATGAGGCAAAC
GCCCCAGGTTTCGAGGCCCCTCCCACCAGCCGCAAGCTCCAGTCCCTGGA
CGACTACAAGCAGTACTTTATGGCAGAAATGAGCCACCCTACTTTCACAC
AATCGGTTATTGCCGAGTGGTGGGCGACGACACTCTTCCTCTTCTTTTTG
ATCCTGAGCTGCTTGCCTGGGGCTAACGACGGGCAGGAGGTCTTCCGCAT
TGGCATTGTGGCCGGTCTCATGATCACCATCCTGGTGTACGCGTTCTATG
CCGTCAGTGGCGGGAATATAAATCCTGCCGTCTCTCTGGGCCTAGCCTTG
TCGGGGCGCATGACGGCTCCTCGTGCTATTTTTTACATCGCGGCGCAGAT
TATCGGTGCCATTACCGGGACGGCCATGGCCAAGGTGGTTAGCCCAACGG
CCTTCAATCTGGGCAAAGGTGGAATGAACGCGCTGCAAGTGCTAAATGTC
GGGGATGATATTGTGACGATCACTGCAGGGCAGGCGTTTTTTGGTGAGGT
GATGGGCAGCATGCTTCTGGTGTTGGCTGTCTTGTTTTGCACGGACACGG
CCCGTTCGATCGAGCACCCTCACATGGTGGCCTTAATCCCCGTAGAGATC
GGCTTTGTCGTGCTCCTCTGCCACATCGCCCTCATTCCCATTGACGGCTG
TGGCATCAACCCCGCGCGTTCCATCGGCTCGGCCGCCATTTATGGCTCCA
ACCTCGATCTCTGGATCTTCGTCTGGGCGCCCGTGGTCGGGGCGATCTTC
GCCGCCGTCACCTATCGTTTCATCTTTTCCCCTACAGAGGTATTCAACGA
TTATTTCAAGCCCAGCAATGTCGTGGACCGAGCATCCAAGCGCCTGCGTA
CCCTCTCGGGGCAGGGCAGTGGGATGGGCCAGTAAGAAAGACGTGAATGA
GACAGGGTAATGGAAGGAGGTGAGAGGTAGGGTGTCATTTTTTCTGGCTC
TTTTTTGTTTCGTTACTCTCGGGTTGTTCATGTGTCGTCTTAGTCGATCG
TGAGGGATGAGAAGGCCTTGGGAAAGCATGAGGGAAGAACGGGAAGCACT
GAAAGGAAGGGAGAACTTGGAGCAACAAGGAGACAAAGAAGTAGAGGGAC
AGAGGGAGTGAATGAGAAAAACAAAAAGGCAAACACACACACATTTACAC
TCACACTGAGATAGAGAAATCTCTATAAAAAGATATGATTGTAGTGTGTG
AACATAAAATATTGTTCAGTGTGCATGTGTGGGCAGTGTCTGAGTAAGCA
GACAGATGATTGTATGTGTGAATGAGGAAAATGCGAATGATCTTCATTTT
GTCTATCTTTCTCTTTCTTTCCAAATTAGGGGTATGGAGAAAATGAAAAG
GAGCTCCAGCGACCGTCTCAGTCGATGTGTACAACTGACAACAAAGTTAA
GATGAGGAAAGAATAAGCTTGTGCTGCTGCTGCGAGTAGGTCTTGGCTTG
AAAATACATTGATGGTGACCCGAGTGCACAGGCAGCAACAGCCAGCACTT
TAAGATACACACAATGAATGGGTAAAATGACACCATCAACTGTGCCACCT
TATCACCTACATATTAGTCATCAAGAAAACATTAATGGTGCTAAAAGAAG
CAAAAAGGTGCGTTACGGAT

Coding sequence (CDS) from alignment at scaffold_15:535080..536849+

>mRNA_6396 ID=mRNA_6396|Name=jgi.p|Nanoce1779_2|594874|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_15:535080..536849+ (Nannochloropsis oceanica)
ATGGCTGACACCACTCACGCCGCCGCCCCTGGTTTCATGGCCCCCGTCGA
CCTGGAAATGGACCCCGTTGCCTCCGAGGCCCCGCATGAGGCAAACGCCC
CAGGTTTCGAGGCCCCTCCCACCAGCCGCAAGCTCCAGTCCCTGGACGAC
TACAAGCAGTACTTTATGGCAGAAATGAGCCACCCTACTTTCACACAATC
GGTTATTGCCGAGTGGTGGGCGACGACACTCTTCCTCTTCTTTTTGATCC
TGAGCTGCTTGCCTGGGGCTAACGACGGGCAGGAGGTCTTCCGCATTGGC
ATTGTGGCCGGTCTCATGATCACCATCCTGGTGTACGCGTTCTATGCCGT
CAGTGGCGGGAATATAAATCCTGCCGTCTCTCTGGGCCTAGCCTTGTCGG
GGCGCATGACGGCTCCTCGTGCTATTTTTTACATCGCGGCGCAGATTATC
GGTGCCATTACCGGGACGGCCATGGCCAAGGTGGTTAGCCCAACGGCCTT
CAATCTGGGCAAAGGTGGAATGAACGCGCTGCAAGTGCTAAATGTCGGGG
ATGATATTGTGACGATCACTGCAGGGCAGGCGTTTTTTGGTGAGGTGATG
GGCAGCATGCTTCTGGTGTTGGCTGTCTTGTTTTGCACGGACACGGCCCG
TTCGATCGAGCACCCTCACATGGTGGCCTTAATCCCCGTAGAGATCGGCT
TTGTCGTGCTCCTCTGCCACATCGCCCTCATTCCCATTGACGGCTGTGGC
ATCAACCCCGCGCGTTCCATCGGCTCGGCCGCCATTTATGGCTCCAACCT
CGATCTCTGGATCTTCGTCTGGGCGCCCGTGGTCGGGGCGATCTTCGCCG
CCGTCACCTATCGTTTCATCTTTTCCCCTACAGAGGTATTCAACGATTAT
TTCAAGCCCAGCAATGTCGTGGACCGAGCATCCAAGCGCCTGCGTACCCT
CTCGGGGCAGGGCAGTGGGATGGGCCAGTAA

Synonyms

Publications