jgi.p|Nanoce1779_2|594868, mRNA_6395 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594868
Unique NamemRNA_6395
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1934
Alignment locationscaffold_15:530920..533462 -

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Properties
Property NameValue
TranscriptId594954
TrackFilteredModels2
ProteinId594868
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:530920..533462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594868gene_6395Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594868mRNA_6395-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6395CDS_6395Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6395 ID=mRNA_6395|Name=jgi.p|Nanoce1779_2|594868|organism=Nannochloropsis oceanica|type=mRNA|length=1934bp
AGATTAGCTCACGCATCCAAGCAGGAGTGTCACCTTGTAAAATAGATCTT
GCCAGCATCATGGGTAGCAGCGCTCCCTTCGTCCAAGAAGCAGCCCGCTT
CTTCATTATCCTGTTCGCCAACGTACCCATGGGGGTTTGTGGCTTCGGGG
ACGCGATTGTAATGCACATGGCCTTGACGCTGTGCGGTATGAGCTTTCCC
GGTGTCTGCTCGACCGCCATCTCCGAGGCCGTCTTCAACTTGACCGTCGG
GGGCCTGGCTGCCATGGCCGTGCAAAGCGCATTGATATGGAGAGACGTCA
ATTGGGAGGTGAGGAGCTGGATAGAGGGAGTGAGGAACAGAGGTAGGGAG
GGCGAGAGATAGGGAAAAACGCGGGAGGAGGCTGGATATCCTAAGCCATT
CCTGCTCAAGGAAATTTTGCCTTATTGGCTGTGTCGCTTATAATATACAC
CTGATTGTTTGGCGCTTCTTACATCGACTGGTCGTTCATCTTGAGCCATG
GCTTCTTTTTGCCTTTTTTGTCACAACGCAGCATGGAGATACGGCATGTA
CCGACGAAATGCACATCAACTTCACCATGCTCGGCCTTGGAATCCTAATT
GCGGCTCGGCCAACATTTCGGCCAACATTTAAAACCAAGGCTGCATCTCA
TTTTATTTTCCATCACATTCTCTCACCCTCCTCCCCTCCCTTCCACCCAC
CAACAGCTCGTCCGCCTCCTTGTGACCCCCATCGTGGTCGGTACTGGCCT
AGGTCTTGTCGCACTATATCACATCCACTCTCTTTGGCTCAAGCAAGTCC
TTGGGATCATTTTCCTGTCGGTGGGGTGCTACCAAATACAGGGTGAAGTT
ATGCGAGCCAAGGGCTTAATAGCGGAAGGAGGATCAGGAGAAAGAAGAGG
GCAGCTGGTGGTGAAGGGGTCGGACAAGGAGGGGCTGCGGCAGATGGGGA
GAGTGTTGGGACTTGCGTCGGGCGTGCTGGCTGGCTTGTTTGGCACGGGG
GGGCCGCCGTTGATGGTGCTTGTGGCTGTTACGGATGTGGGAAAGGATGA
GTGGCGTGCGAGCAATGCCGTCATTTGGTTGGTCGACAATGTGGTCAGAT
TTGCGTATCTGTATGCGGTGCAACGACAGATGGCCTTGCTCAATGACGGT
CCCAGCCTCGTGAGTCTGATGTTAGCCGGCGGTGTGGGCGTGTATGCAGG
ATCGGTTCTTTCTCCAATGGTCGATGTGGCCCTCTTTCGCCGGCTCCTGA
TTCTCCTTATGCTGTTGGGTGCGAACGTCATGTTGTTTGCAGGCACTCCC
GGGGGTGTGGCCTTGTCTGGAGTCCTCTCCATTTTTTCCCTCCTCATTTT
GTATATCCTAGCCTTGTGGCATCAACCTCTTTTGCTCGCCAAGGGAGGTA
ATAACCTGGCACCGGCGGGCGTGGGAATGGAAGAAGAGGCGGGTAGTCAT
CGGCCGCAGCGATGGTTGGGAAACGCTGGATACAACCAGGTGGCGACCCG
GGAGCAGGAGGAAGATGGAGAAGAGGAGACTGATGGGCTGCTTGTGGACA
GGCATGAGGGGAAGGAAAATGTCAATGAAGGAAAGAGCGGTTGTAAATCT
CAAACGACGATTGAGATGGTGGTCGTGTGACGACAGGAGTAAAATTAGGA
TGCTGATTGCACAAAGGGGCGCGCAACTATCAACGATTGATAATGTGGTG
ACGGAAGGTAGGATAGGGAGATTGCGAAAGAGATTTGTTGGGGTTAGGAG
AAATGCAAAGCATACATGTACAGAGCAAATGCTTCTTTACTCATCAAACG
AACGGCATAAACGAATGGATAATGATGACAACGAATGAATGAATGTGCTT
GCGGGCTGAGAATAGTGGGAGGCGGTTACAATTATTGAATTGATGACAAA
AATCGAAGTAAAGTAAAAAGTAAGTTGTTTTCTA
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protein sequence of jgi.p|Nanoce1779_2|594868

>mRNA_6395-protein ID=mRNA_6395-protein|Name=jgi.p|Nanoce1779_2|594868|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MRAKGLIAEGGSGERRGQLVVKGSDKEGLRQMGRVLGLASGVLAGLFGTG
GPPLMVLVAVTDVGKDEWRASNAVIWLVDNVVRFAYLYAVQRQMALLNDG
PSLVSLMLAGGVGVYAGSVLSPMVDVALFRRLLILLMLLGANVMLFAGTP
GGVALSGVLSIFSLLILYILALWHQPLLLAKGGNNLAPAGVGMEEEAGSH
RPQRWLGNAGYNQVATREQEEDGEEETDGLLVDRHEGKENVNEGKSGCKS
QTTIEMVVV*
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mRNA from alignment at scaffold_15:530920..533462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6395 ID=mRNA_6395|Name=jgi.p|Nanoce1779_2|594868|organism=Nannochloropsis oceanica|type=mRNA|length=2543bp|location=Sequence derived from alignment at scaffold_15:530920..533462- (Nannochloropsis oceanica)
AGATTAGCTCACGCATCCAAGCAGGAGTGTCACCTTGTAAAATAGATCTT
GCCAGCATCATGGGTAGCAGCGCTCCCTTCGTCCAAGAAGCAGCCCGCTT
CTTCATTATCCTGTTCGCCAACGTACCCATGGGGGTTTGTGGCTTCGGGG
ACGCGATTGTAATGCACATGGCCTTGACGCTGTGCGGTATGGTAAGGCGG
GAGGGAAGAGGATTGATGATGTGGTGGCTGGCGGAGGGAGGGAGTGAAAC
TAGGTGATGACTTAGCTGGGGTCCCCCCCAAAAAGAGCGGTGACCATTAT
CCCTCCACAGACCAGACAGACATGGGGAGACAAGTGAAGGCACAAATTCT
TGCTGCCAGATCATCACTGCTCGCTTCTTCCTCGCATCCTTTTTGTGCGC
GGCGGCCTGGACATCTTCGTCCGCCATATACTTTTTTCTGCAGGCCGTCT
TCTCTCCTCAACCCACCTCCCCAGTCAGTGCCCCAGTCACCAAACCTGTC
CTTAAACTCACAGTCTCGTTCAATCCATCCAATACCGCTTTCCCCCATTT
GAATCTCAAACTTTCTCTTCTGTCCCCACCCGCCCTCCCAACACCCAGAG
CTTTCCCGGTGTCTGCTCGACCGCCATCTCCGAGGCCGTCTTCAACTTGA
CCGTCGGGGGCCTGGCTGCCATGGCCGTGCAAAGCGCATTGATATGGAGA
GACGTCAATTGGGAGGTGAGGAGCTGGATAGAGGGAGTGAGGAACAGAGG
TAGGGAGGGCGAGAGATAGGGAAAAACGCGGGAGGAGGCTGGATATCCTA
AGCCATTCCTGCTCAAGGAAATTTTGCCTTATTGGCTGTGTCGCTTATAA
TATACACCTGATTGTTTGGCGCTTCTTACATCGACTGGTCGTTCATCTTG
AGCCATGGCTTCTTTTTGCCTTTTTTGTCACAACGCAGCATGGAGATACG
GCATGTACCGACGAAATGCACATCAACTTCACCATGCTCGGCCTTGGAAT
CCTAATTGCGGCTCGGCCAACATTTCGGCCAACATTTAAAACCAAGGCTG
CATCTCATTTTATTTTCCATCACATTCTCTCACCCTCCTCCCCTCCCTTC
CACCCACCAACAGCTCGTCCGCCTCCTTGTGACCCCCATCGTGGTCGGTA
CTGGCCTAGGTCTTGTCGCACTATATCACATCCACTCTCTTTGGCTCAAG
CAAGTCCTTGGGATCATTTTCCTGTCGGTGGGGTGCTACCAAATACAGGG
TGAAGTTATGCGAGCCAAGGGCTTAATAGCGGAAGGAGGATCAGGAGAAA
GAAGAGGGCAGCTGGTGGTGAAGGGGTCGGACAAGGAGGGGCTGCGGCAG
ATGGGGAGAGTGTTGGGACTTGCGTCGGGCGTGCTGGCTGGCTTGTTTGG
CACGGGGGGGCCGCCGTTGATGGTGCTTGTGGCTGTTACGGATGTGGGAA
AGGATGAGTGGCGTGCGAGCAATGCCGTCATTTGGTTGGTCGACAATGTG
GTCAGATTTGCGTATCTGTATGCGGTGCAACGACAGGTAAATGCTTTGGT
GGGGAAGGGACGATGAAGGAGAAGGAATCGTCGAAGGGAGGGGGTGAGGG
AGGAGGCGGAAGATTAAAATGCCAAGCCCGTGCTACCCCCACCACTGAAT
CCTTGTTCAGCGCTTCTAAGATGAAGTGTCTCATTCGTCCTTAATCCTCC
CTTCCAACCCTCTCCAACCTCCCAATTGCACTAAACAGATGGCCTTGCTC
AATGACGGTCCCAGCCTCGTGAGTCTGATGTTAGCCGGCGGTGTGGGCGT
GTATGCAGGATCGGTTCTTTCTCCAATGGTCGATGTGGCCCTCTTTCGCC
GGCTCCTGATTCTCCTTATGCTGTTGGGTGCGAACGTCATGTTGTTTGCA
GGCACTCCCGGGGGTGTGGCCTTGTCTGGAGTCCTCTCCATTTTTTCCCT
CCTCATTTTGTATATCCTAGCCTTGTGGCATCAACCTCTTTTGCTCGCCA
AGGGAGGTAATAACCTGGCACCGGCGGGCGTGGGAATGGAAGAAGAGGCG
GGTAGTCATCGGCCGCAGCGATGGTTGGGAAACGCTGGATACAACCAGGT
GGCGACCCGGGAGCAGGAGGAAGATGGAGAAGAGGAGACTGATGGGCTGC
TTGTGGACAGGCATGAGGGGAAGGAAAATGTCAATGAAGGAAAGAGCGGT
TGTAAATCTCAAACGACGATTGAGATGGTGGTCGTGTGACGACAGGAGTA
AAATTAGGATGCTGATTGCACAAAGGGGCGCGCAACTATCAACGATTGAT
AATGTGGTGACGGAAGGTAGGATAGGGAGATTGCGAAAGAGATTTGTTGG
GGTTAGGAGAAATGCAAAGCATACATGTACAGAGCAAATGCTTCTTTACT
CATCAAACGAACGGCATAAACGAATGGATAATGATGACAACGAATGAATG
AATGTGCTTGCGGGCTGAGAATAGTGGGAGGCGGTTACAATTATTGAATT
GATGACAAAAATCGAAGTAAAGTAAAAAGTAAGTTGTTTTCTA
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Coding sequence (CDS) from alignment at scaffold_15:530920..533462-

>mRNA_6395 ID=mRNA_6395|Name=jgi.p|Nanoce1779_2|594868|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_15:530920..533462- (Nannochloropsis oceanica)
ATGGCCTTGCTCAATGACGGTCCCAGCCTCGTGAGTCTGATGTTAGCCGG
CGGTGTGGGCGTGTATGCAGGATCGGTTCTTTCTCCAATGGTCGATGTGG
CCCTCTTTCGCCGGCTCCTGATTCTCCTTATGCTGTTGGGTGCGAACGTC
ATGTTGTTTGCAGGCACTCCCGGGGGTGTGGCCTTGTCTGGAGTCCTCTC
CATTTTTTCCCTCCTCATTTTGTATATCCTAGCCTTGTGGCATCAACCTC
TTTTGCTCGCCAAGGGAGGTAATAACCTGGCACCGGCGGGCGTGGGAATG
GAAGAAGAGGCGGGTAGTCATCGGCCGCAGCGATGGTTGGGAAACGCTGG
ATACAACCAGGTGGCGACCCGGGAGCAGGAGGAAGATGGAGAAGAGGAGA
CTGATGGGCTGCTTGTGGACAGGCATGAGGGGAAGGAAAATGTCAATGAA
GGAAAGAGCGGTTGTAAATCTCAAACGACGATTGAGATGGTGGTCGTGTG
AATGCGAGCCAAGGGCTTAATAGCGGAAGGAGGATCAGGAGAAAGAAGAG
GGCAGCTGGTGGTGAAGGGGTCGGACAAGGAGGGGCTGCGGCAGATGGGG
AGAGTGTTGGGACTTGCGTCGGGCGTGCTGGCTGGCTTGTTTGGCACGGG
GGGGCCGCCGTTGATGGTGCTTGTGGCTGTTACGGATGTGGGAAAGGATG
AGTGGCGTGCGAGCAATGCCGTCATTTGGTTGGTCGACAATGTGGTCAGA
TTTGCGTATCTGTATGCGGTGCAACGACAGATGGCCTTGCTCAATGACGG
TCCCAGCCTCGTGAGTCTGATGTTAGCCGGCGGTGTGGGCGTGTATGCAG
GATCGGTTCTTTCTCCAATGGTCGATGTGGCCCTCTTTCGCCGGCTCCTG
ATTCTCCTTATGCTGTTGGGTGCGAACGTCATGTTGTTTGCAGGCACTCC
CGGGGGTGTGGCCTTGTCTGGAGTCCTCTCCATTTTTTCCCTCCTCATTT
TGTATATCCTAGCCTTGTGGCATCAACCTCTTTTGCTCGCCAAGGGAGGT
AATAACCTGGCACCGGCGGGCGTGGGAATGGAAGAAGAGGCGGGTAGTCA
TCGGCCGCAGCGATGGTTGGGAAACGCTGGATACAACCAGGTGGCGACCC
GGGAGCAGGAGGAAGATGGAGAAGAGGAGACTGATGGGCTGCTTGTGGAC
AGGCATGAGGGGAAGGAAAATGTCAATGAAGGAAAGAGCGGTTGTAAATC
TCAAACGACGATTGAGATGGTGGTCGTGTGAATGCGAGCCAAGGGCTTAA
TAGCGGAAGGAGGATCAGGAGAAAGAAGAGGGCAGCTGGTGGTGAAGGGG
TCGGACAAGGAGGGGCTGCGGCAGATGGGGAGAGTGTTGGGACTTGCGTC
GGGCGTGCTGGCTGGCTTGTTTGGCACGGGGGGGCCGCCGTTGATGGTGC
TTGTGGCTGTTACGGATGTGGGAAAGGATGAGTGGCGTGCGAGCAATGCC
GTCATTTGGTTGGTCGACAATGTGGTCAGATTTGCGTATCTGTATGCGGT
GCAACGACAG
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Synonyms
Publications