jgi.p|Nanoce1779_2|594861, mRNA_6394 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594861
Unique NamemRNA_6394
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1927
Alignment locationscaffold_15:528449..530375 +

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Properties
Property NameValue
TranscriptId594947
TrackFilteredModels2
ProteinId594861
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:528449..530375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594861gene_6394Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594861mRNA_6394-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6394CDS_6394Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6394 ID=mRNA_6394|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp
AGGCTAAACCGGCAACCGGTCGACTAGGTTGATGATGCAGTGCTTTCTTT
TCCTATTCCTTGTCCTGCTCCTTTCCGTGGTCGAGTCTTTCCTCCTTCCC
TTCCGCCCAGCCTCCCCATCCACCCTACCATCATTGCAGCTACATCAACT
AGACGGAGCAAGGCAGTTGCCGCTTTCCCGACCAATACAACATTTGCATG
CCACAGAATCTTTAGAAGGCAATGCAGAAGCTGGAGAATCCGTCGATCCA
GCTGCATCCTCTGCACCCGCAGTGCCCAAGCCTTTTGTCTCCCGCCGCGT
GCGCCGCGGGCCCATTGGGGCAGCCGCCAGCCTCAGCAACAAGAAGAAAA
AATCAGCAGAGGAAATGGATAAGACTTCTTCCCTCTCTCCAGTTGCCACC
ACCTCGACTGCTTCTACTTCCGCACCCTTCATCCCTTCCTCGACCCCCAT
GGTGCTCAAACTGAGTAACAAGTGGGCATGCGTTGCAAACTGCGGGGCTT
GTTGCTATCTAGCCCCTTCGGAACGACCCTACCTCATGGACTACTTCGAC
GATCCCGATGACCTGGCATTGTACAACAGCATGACAGGTGATGATGGTTG
GTGCGTGCATTACGATAAAACGGCCAGGGCCTGCACGGTATTTGAGGACC
GGCCCTGGTTTTGTCGAGTGGAAGGGGAGACGTTCGGAAAGATGTATGGA
GTGACACCCCCAGAGATGGACAAGTTCTGCACCTCCTGCTGCCGGGAGCA
GATTGCTGATGTGTATGGGACGGTGAGCACAGAAATGACGACTTTCAATC
TGGCTATCAAGCATCTGAAGGGTGCGAACACAGCGCCAGACGATGGGGGC
AAGAAGAAGAAGGGTGGTGGCTTTGGCAAGGCGGCCCAGGTCAAGGCGCT
GCACGAGGCGGCGGCGGCGTTCGTGAAGCCTGTCGTGCCGATCGACCCAT
TCACAGGAGAAGAGTCGACTAAGGTGGCCGTCAAGGCAGATTGGATAAAT
ACACAAGAATGACGCCGAGGGAAAAAGAAAAGATTAGAAAATTGTATGAA
ACGAATCCAAAAAGTGTATGCAAATGAAAATTGAAAGTTGCTCCATTGAC
GCAAGACAATGAGACTGACAAGTGAAGCAAGCAGAACAAAGCGGGCATCT
CTATGGAATTTAAACCTTATACATGCGCGGAGGTGTCACCATGTACTTTG
TTTGGTGTCTGCCTTTCTTTTTGTGTGACATTTGTATGCCTCACCCTTCT
CCGCATCTATAGACATCCTTCCTCCTTAAGCTTCTTAGCTCGACCGGCAA
CACCACTTGGACAATGACATTGATACAAGGGCCCGTCATGCTCAGTCTCC
TTCCTCATAACTGACAGGTAATCCTTGGTTTCTTTCTGTCTCTCTCACGC
TCTCACCCGGAATTTTGTAACAATATCAATATTTATTTATGTCGGCCAGG
CGATATCATGTAGTTTTGAACGTCAGTATTCCGAGTTAAGCATTCCGTCC
TATAAAGGGTATGCTCCTGCTGCTTTTCATATAATCCACGAATGAGAGCG
GAGAAAAGAACGTATCGGAAGGCTTCCATCCCCATTGTTCATCGTTTGTT
GCCACTCTCCCTTCTCTTCCCACTCCATTGTTTTCCGAACGTTGCATCTT
TCGCCTCAAACAAATTTTGATTTTTGTGTGTTTGCATGAAACGCGATACA
CCCCACGCTCCGAACCATACAACATTGTTACTTGCCCTTTGCTTTCTTCA
CTGCTTCACCCCACCCTTCCACACTACCAACACCAAACACATGCACACGC
TCACACTCATGAATGCCGCCGGAAATTGTAGATGCCGCCTCTTAAGGCGT
GGCATTGGGCTCGCTCTTCGCTGCTTCTTTCACTGCCACCACTACCCTCT
CCCCCTACCATCCATACCCACTCCCCC
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protein sequence of jgi.p|Nanoce1779_2|594861

>mRNA_6394-protein ID=mRNA_6394-protein|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MMQCFLFLFLVLLLSVVESFLLPFRPASPSTLPSLQLHQLDGARQLPLSR
PIQHLHATESLEGNAEAGESVDPAASSAPAVPKPFVSRRVRRGPIGAAAS
LSNKKKKSAEEMDKTSSLSPVATTSTASTSAPFIPSSTPMVLKLSNKWAC
VANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARA
CTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVST
EMTTFNLAIKHLKGANTAPDDGGKKKKGGGFGKAAQVKALHEAAAAFVKP
VVPIDPFTGEESTKVAVKADWINTQE*
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mRNA from alignment at scaffold_15:528449..530375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6394 ID=mRNA_6394|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp|location=Sequence derived from alignment at scaffold_15:528449..530375+ (Nannochloropsis oceanica)
AGGCTAAACCGGCAACCGGTCGACTAGGTTGATGATGCAGTGCTTTCTTT TCCTATTCCTTGTCCTGCTCCTTTCCGTGGTCGAGTCTTTCCTCCTTCCC TTCCGCCCAGCCTCCCCATCCACCCTACCATCATTGCAGCTACATCAACT AGACGGAGCAAGGCAGTTGCCGCTTTCCCGACCAATACAACATTTGCATG CCACAGAATCTTTAGAAGGCAATGCAGAAGCTGGAGAATCCGTCGATCCA GCTGCATCCTCTGCACCCGCAGTGCCCAAGCCTTTTGTCTCCCGCCGCGT GCGCCGCGGGCCCATTGGGGCAGCCGCCAGCCTCAGCAACAAGAAGAAAA AATCAGCAGAGGAAATGGATAAGACTTCTTCCCTCTCTCCAGTTGCCACC ACCTCGACTGCTTCTACTTCCGCACCCTTCATCCCTTCCTCGACCCCCAT GGTGCTCAAACTGAGTAACAAGTGGGCATGCGTTGCAAACTGCGGGGCTT GTTGCTATCTAGCCCCTTCGGAACGACCCTACCTCATGGACTACTTCGAC GATCCCGATGACCTGGCATTGTACAACAGCATGACAGGTGATGATGGTTG GTGCGTGCATTACGATAAAACGGCCAGGGCCTGCACGGTATTTGAGGACC GGCCCTGGTTTTGTCGAGTGGAAGGGGAGACGTTCGGAAAGATGTATGGA GTGACACCCCCAGAGATGGACAAGTTCTGCACCTCCTGCTGCCGGGAGCA GATTGCTGATGTGTATGGGACGGTGAGCACAGAAATGACGACTTTCAATC TGGCTATCAAGCATCTGAAGGGTGCGAACACAGCGCCAGACGATGGGGGC AAGAAGAAGAAGGGTGGTGGCTTTGGCAAGGCGGCCCAGGTCAAGGCGCT GCACGAGGCGGCGGCGGCGTTCGTGAAGCCTGTCGTGCCGATCGACCCAT TCACAGGAGAAGAGTCGACTAAGGTGGCCGTCAAGGCAGATTGGATAAAT ACACAAGAATGACGCCGAGGGAAAAAGAAAAGATTAGAAAATTGTATGAA ACGAATCCAAAAAGTGTATGCAAATGAAAATTGAAAGTTGCTCCATTGAC GCAAGACAATGAGACTGACAAGTGAAGCAAGCAGAACAAAGCGGGCATCT CTATGGAATTTAAACCTTATACATGCGCGGAGGTGTCACCATGTACTTTG TTTGGTGTCTGCCTTTCTTTTTGTGTGACATTTGTATGCCTCACCCTTCT CCGCATCTATAGACATCCTTCCTCCTTAAGCTTCTTAGCTCGACCGGCAA CACCACTTGGACAATGACATTGATACAAGGGCCCGTCATGCTCAGTCTCC TTCCTCATAACTGACAGGTAATCCTTGGTTTCTTTCTGTCTCTCTCACGC TCTCACCCGGAATTTTGTAACAATATCAATATTTATTTATGTCGGCCAGG CGATATCATGTAGTTTTGAACGTCAGTATTCCGAGTTAAGCATTCCGTCC TATAAAGGGTATGCTCCTGCTGCTTTTCATATAATCCACGAATGAGAGCG GAGAAAAGAACGTATCGGAAGGCTTCCATCCCCATTGTTCATCGTTTGTT GCCACTCTCCCTTCTCTTCCCACTCCATTGTTTTCCGAACGTTGCATCTT TCGCCTCAAACAAATTTTGATTTTTGTGTGTTTGCATGAAACGCGATACA CCCCACGCTCCGAACCATACAACATTGTTACTTGCCCTTTGCTTTCTTCA CTGCTTCACCCCACCCTTCCACACTACCAACACCAAACACATGCACACGC TCACACTCATGAATGCCGCCGGAAATTGTAGATGCCGCCTCTTAAGGCGT GGCATTGGGCTCGCTCTTCGCTGCTTCTTTCACTGCCACCACTACCCTCT CCCCCTACCATCCATACCCACTCCCCC
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Coding sequence (CDS) from alignment at scaffold_15:528449..530375+

>mRNA_6394 ID=mRNA_6394|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_15:528449..530375+ (Nannochloropsis oceanica)
ATGATGCAGTGCTTTCTTTTCCTATTCCTTGTCCTGCTCCTTTCCGTGGT
CGAGTCTTTCCTCCTTCCCTTCCGCCCAGCCTCCCCATCCACCCTACCAT
CATTGCAGCTACATCAACTAGACGGAGCAAGGCAGTTGCCGCTTTCCCGA
CCAATACAACATTTGCATGCCACAGAATCTTTAGAAGGCAATGCAGAAGC
TGGAGAATCCGTCGATCCAGCTGCATCCTCTGCACCCGCAGTGCCCAAGC
CTTTTGTCTCCCGCCGCGTGCGCCGCGGGCCCATTGGGGCAGCCGCCAGC
CTCAGCAACAAGAAGAAAAAATCAGCAGAGGAAATGGATAAGACTTCTTC
CCTCTCTCCAGTTGCCACCACCTCGACTGCTTCTACTTCCGCACCCTTCA
TCCCTTCCTCGACCCCCATGGTGCTCAAACTGAGTAACAAGTGGGCATGC
GTTGCAAACTGCGGGGCTTGTTGCTATCTAGCCCCTTCGGAACGACCCTA
CCTCATGGACTACTTCGACGATCCCGATGACCTGGCATTGTACAACAGCA
TGACAGGTGATGATGGTTGGTGCGTGCATTACGATAAAACGGCCAGGGCC
TGCACGGTATTTGAGGACCGGCCCTGGTTTTGTCGAGTGGAAGGGGAGAC
GTTCGGAAAGATGTATGGAGTGACACCCCCAGAGATGGACAAGTTCTGCA
CCTCCTGCTGCCGGGAGCAGATTGCTGATGTGTATGGGACGGTGAGCACA
GAAATGACGACTTTCAATCTGGCTATCAAGCATCTGAAGGGTGCGAACAC
AGCGCCAGACGATGGGGGCAAGAAGAAGAAGGGTGGTGGCTTTGGCAAGG
CGGCCCAGGTCAAGGCGCTGCACGAGGCGGCGGCGGCGTTCGTGAAGCCT
GTCGTGCCGATCGACCCATTCACAGGAGAAGAGTCGACTAAGGTGGCCGT
CAAGGCAGATTGGATAAATACACAAGAATGA
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Synonyms
Publications