Properties
Property Name | Value |
TranscriptId | 594947 |
Track | FilteredModels2 |
ProteinId | 594861 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_15 | supercontig | scaffold_15:528449..530375 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6394 ID=mRNA_6394|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp AGGCTAAACCGGCAACCGGTCGACTAGGTTGATGATGCAGTGCTTTCTTT TCCTATTCCTTGTCCTGCTCCTTTCCGTGGTCGAGTCTTTCCTCCTTCCC TTCCGCCCAGCCTCCCCATCCACCCTACCATCATTGCAGCTACATCAACT AGACGGAGCAAGGCAGTTGCCGCTTTCCCGACCAATACAACATTTGCATG CCACAGAATCTTTAGAAGGCAATGCAGAAGCTGGAGAATCCGTCGATCCA GCTGCATCCTCTGCACCCGCAGTGCCCAAGCCTTTTGTCTCCCGCCGCGT GCGCCGCGGGCCCATTGGGGCAGCCGCCAGCCTCAGCAACAAGAAGAAAA AATCAGCAGAGGAAATGGATAAGACTTCTTCCCTCTCTCCAGTTGCCACC ACCTCGACTGCTTCTACTTCCGCACCCTTCATCCCTTCCTCGACCCCCAT GGTGCTCAAACTGAGTAACAAGTGGGCATGCGTTGCAAACTGCGGGGCTT GTTGCTATCTAGCCCCTTCGGAACGACCCTACCTCATGGACTACTTCGAC GATCCCGATGACCTGGCATTGTACAACAGCATGACAGGTGATGATGGTTG GTGCGTGCATTACGATAAAACGGCCAGGGCCTGCACGGTATTTGAGGACC GGCCCTGGTTTTGTCGAGTGGAAGGGGAGACGTTCGGAAAGATGTATGGA GTGACACCCCCAGAGATGGACAAGTTCTGCACCTCCTGCTGCCGGGAGCA GATTGCTGATGTGTATGGGACGGTGAGCACAGAAATGACGACTTTCAATC TGGCTATCAAGCATCTGAAGGGTGCGAACACAGCGCCAGACGATGGGGGC AAGAAGAAGAAGGGTGGTGGCTTTGGCAAGGCGGCCCAGGTCAAGGCGCT GCACGAGGCGGCGGCGGCGTTCGTGAAGCCTGTCGTGCCGATCGACCCAT TCACAGGAGAAGAGTCGACTAAGGTGGCCGTCAAGGCAGATTGGATAAAT ACACAAGAATGACGCCGAGGGAAAAAGAAAAGATTAGAAAATTGTATGAA ACGAATCCAAAAAGTGTATGCAAATGAAAATTGAAAGTTGCTCCATTGAC GCAAGACAATGAGACTGACAAGTGAAGCAAGCAGAACAAAGCGGGCATCT CTATGGAATTTAAACCTTATACATGCGCGGAGGTGTCACCATGTACTTTG TTTGGTGTCTGCCTTTCTTTTTGTGTGACATTTGTATGCCTCACCCTTCT CCGCATCTATAGACATCCTTCCTCCTTAAGCTTCTTAGCTCGACCGGCAA CACCACTTGGACAATGACATTGATACAAGGGCCCGTCATGCTCAGTCTCC TTCCTCATAACTGACAGGTAATCCTTGGTTTCTTTCTGTCTCTCTCACGC TCTCACCCGGAATTTTGTAACAATATCAATATTTATTTATGTCGGCCAGG CGATATCATGTAGTTTTGAACGTCAGTATTCCGAGTTAAGCATTCCGTCC TATAAAGGGTATGCTCCTGCTGCTTTTCATATAATCCACGAATGAGAGCG GAGAAAAGAACGTATCGGAAGGCTTCCATCCCCATTGTTCATCGTTTGTT GCCACTCTCCCTTCTCTTCCCACTCCATTGTTTTCCGAACGTTGCATCTT TCGCCTCAAACAAATTTTGATTTTTGTGTGTTTGCATGAAACGCGATACA CCCCACGCTCCGAACCATACAACATTGTTACTTGCCCTTTGCTTTCTTCA CTGCTTCACCCCACCCTTCCACACTACCAACACCAAACACATGCACACGC TCACACTCATGAATGCCGCCGGAAATTGTAGATGCCGCCTCTTAAGGCGT GGCATTGGGCTCGCTCTTCGCTGCTTCTTTCACTGCCACCACTACCCTCT CCCCCTACCATCCATACCCACTCCCCC back to topprotein sequence of jgi.p|Nanoce1779_2|594861 >mRNA_6394-protein ID=mRNA_6394-protein|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp MMQCFLFLFLVLLLSVVESFLLPFRPASPSTLPSLQLHQLDGARQLPLSR PIQHLHATESLEGNAEAGESVDPAASSAPAVPKPFVSRRVRRGPIGAAAS LSNKKKKSAEEMDKTSSLSPVATTSTASTSAPFIPSSTPMVLKLSNKWAC VANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARA CTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVST EMTTFNLAIKHLKGANTAPDDGGKKKKGGGFGKAAQVKALHEAAAAFVKP VVPIDPFTGEESTKVAVKADWINTQE* back to topmRNA from alignment at scaffold_15:528449..530375+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6394 ID=mRNA_6394|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp|location=Sequence derived from alignment at scaffold_15:528449..530375+ (Nannochloropsis oceanica) AGGCTAAACCGGCAACCGGTCGACTAGGTTGATGATGCAGTGCTTTCTTT
TCCTATTCCTTGTCCTGCTCCTTTCCGTGGTCGAGTCTTTCCTCCTTCCC
TTCCGCCCAGCCTCCCCATCCACCCTACCATCATTGCAGCTACATCAACT
AGACGGAGCAAGGCAGTTGCCGCTTTCCCGACCAATACAACATTTGCATG
CCACAGAATCTTTAGAAGGCAATGCAGAAGCTGGAGAATCCGTCGATCCA
GCTGCATCCTCTGCACCCGCAGTGCCCAAGCCTTTTGTCTCCCGCCGCGT
GCGCCGCGGGCCCATTGGGGCAGCCGCCAGCCTCAGCAACAAGAAGAAAA
AATCAGCAGAGGAAATGGATAAGACTTCTTCCCTCTCTCCAGTTGCCACC
ACCTCGACTGCTTCTACTTCCGCACCCTTCATCCCTTCCTCGACCCCCAT
GGTGCTCAAACTGAGTAACAAGTGGGCATGCGTTGCAAACTGCGGGGCTT
GTTGCTATCTAGCCCCTTCGGAACGACCCTACCTCATGGACTACTTCGAC
GATCCCGATGACCTGGCATTGTACAACAGCATGACAGGTGATGATGGTTG
GTGCGTGCATTACGATAAAACGGCCAGGGCCTGCACGGTATTTGAGGACC
GGCCCTGGTTTTGTCGAGTGGAAGGGGAGACGTTCGGAAAGATGTATGGA
GTGACACCCCCAGAGATGGACAAGTTCTGCACCTCCTGCTGCCGGGAGCA
GATTGCTGATGTGTATGGGACGGTGAGCACAGAAATGACGACTTTCAATC
TGGCTATCAAGCATCTGAAGGGTGCGAACACAGCGCCAGACGATGGGGGC
AAGAAGAAGAAGGGTGGTGGCTTTGGCAAGGCGGCCCAGGTCAAGGCGCT
GCACGAGGCGGCGGCGGCGTTCGTGAAGCCTGTCGTGCCGATCGACCCAT
TCACAGGAGAAGAGTCGACTAAGGTGGCCGTCAAGGCAGATTGGATAAAT
ACACAAGAATGACGCCGAGGGAAAAAGAAAAGATTAGAAAATTGTATGAA
ACGAATCCAAAAAGTGTATGCAAATGAAAATTGAAAGTTGCTCCATTGAC
GCAAGACAATGAGACTGACAAGTGAAGCAAGCAGAACAAAGCGGGCATCT
CTATGGAATTTAAACCTTATACATGCGCGGAGGTGTCACCATGTACTTTG
TTTGGTGTCTGCCTTTCTTTTTGTGTGACATTTGTATGCCTCACCCTTCT
CCGCATCTATAGACATCCTTCCTCCTTAAGCTTCTTAGCTCGACCGGCAA
CACCACTTGGACAATGACATTGATACAAGGGCCCGTCATGCTCAGTCTCC
TTCCTCATAACTGACAGGTAATCCTTGGTTTCTTTCTGTCTCTCTCACGC
TCTCACCCGGAATTTTGTAACAATATCAATATTTATTTATGTCGGCCAGG
CGATATCATGTAGTTTTGAACGTCAGTATTCCGAGTTAAGCATTCCGTCC
TATAAAGGGTATGCTCCTGCTGCTTTTCATATAATCCACGAATGAGAGCG
GAGAAAAGAACGTATCGGAAGGCTTCCATCCCCATTGTTCATCGTTTGTT
GCCACTCTCCCTTCTCTTCCCACTCCATTGTTTTCCGAACGTTGCATCTT
TCGCCTCAAACAAATTTTGATTTTTGTGTGTTTGCATGAAACGCGATACA
CCCCACGCTCCGAACCATACAACATTGTTACTTGCCCTTTGCTTTCTTCA
CTGCTTCACCCCACCCTTCCACACTACCAACACCAAACACATGCACACGC
TCACACTCATGAATGCCGCCGGAAATTGTAGATGCCGCCTCTTAAGGCGT
GGCATTGGGCTCGCTCTTCGCTGCTTCTTTCACTGCCACCACTACCCTCT
CCCCCTACCATCCATACCCACTCCCCC back to topCoding sequence (CDS) from alignment at scaffold_15:528449..530375+ >mRNA_6394 ID=mRNA_6394|Name=jgi.p|Nanoce1779_2|594861|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_15:528449..530375+ (Nannochloropsis oceanica) ATGATGCAGTGCTTTCTTTTCCTATTCCTTGTCCTGCTCCTTTCCGTGGT CGAGTCTTTCCTCCTTCCCTTCCGCCCAGCCTCCCCATCCACCCTACCAT CATTGCAGCTACATCAACTAGACGGAGCAAGGCAGTTGCCGCTTTCCCGA CCAATACAACATTTGCATGCCACAGAATCTTTAGAAGGCAATGCAGAAGC TGGAGAATCCGTCGATCCAGCTGCATCCTCTGCACCCGCAGTGCCCAAGC CTTTTGTCTCCCGCCGCGTGCGCCGCGGGCCCATTGGGGCAGCCGCCAGC CTCAGCAACAAGAAGAAAAAATCAGCAGAGGAAATGGATAAGACTTCTTC CCTCTCTCCAGTTGCCACCACCTCGACTGCTTCTACTTCCGCACCCTTCA TCCCTTCCTCGACCCCCATGGTGCTCAAACTGAGTAACAAGTGGGCATGC GTTGCAAACTGCGGGGCTTGTTGCTATCTAGCCCCTTCGGAACGACCCTA CCTCATGGACTACTTCGACGATCCCGATGACCTGGCATTGTACAACAGCA TGACAGGTGATGATGGTTGGTGCGTGCATTACGATAAAACGGCCAGGGCC TGCACGGTATTTGAGGACCGGCCCTGGTTTTGTCGAGTGGAAGGGGAGAC GTTCGGAAAGATGTATGGAGTGACACCCCCAGAGATGGACAAGTTCTGCA CCTCCTGCTGCCGGGAGCAGATTGCTGATGTGTATGGGACGGTGAGCACA GAAATGACGACTTTCAATCTGGCTATCAAGCATCTGAAGGGTGCGAACAC AGCGCCAGACGATGGGGGCAAGAAGAAGAAGGGTGGTGGCTTTGGCAAGG CGGCCCAGGTCAAGGCGCTGCACGAGGCGGCGGCGGCGTTCGTGAAGCCT GTCGTGCCGATCGACCCATTCACAGGAGAAGAGTCGACTAAGGTGGCCGT CAAGGCAGATTGGATAAATACACAAGAATGA back to top
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