jgi.p|Nanoce1779_2|631523, mRNA_6393 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631523
Unique Name	mRNA_6393
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1439
Alignment location	scaffold_15:526519..528250 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631609
Track	FilteredModels2
ProteinId	631523

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:526519..528250 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631523	gene_6393	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631523	mRNA_6393-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6393	CDS_6393	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:526519..528250-
coding sequence from alignment at scaffold_15:526519..528250-

mRNA sequence

>mRNA_6393 ID=mRNA_6393|Name=jgi.p|Nanoce1779_2|631523|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
AACCACAGGGGCCGCGACCGCCAGCCGAAATTGCGTGAAAGACCTCCCAC
CCTCTTCTACCGGTTCGACCTCCCCACCAACAAATCCATGAAGCTGGACG
TGACGTGCATGCGGTACCTCTCCAAGGACGACTACCGTGTCCTGACGGCC
GTGGAAATGGGTATGAAGAATCACGACGTGGTGCCCGTGGAGCTGATTGT
CAACATTGCCAAGCTCCGGCATGGCGGTGCGCAGAAGTTTCTCAATACCT
TACTGCGGTTCAAGCTCATTTACAACGATAAGACCACCTATGACGGCTAT
CGACTAACCTACGGCGGGTATGATATACTGGCACTCAAGACTTTCTATGC
ACGGGGGCACATTTCAGGGGTGGGTCAAAAAGTCGGTGTCGGCAAAGAAT
CCGATATCTATGTCGCGCAAACCGAGAGCGGGGACGAGGTCATCCTCAAA
TTCCACCGCCTGGGCCGGGTCTCCTTCCGCGCCGTCAAAAACAAGCGCGA
CTACCTGCAGCACCGCAAGTCGGCCTCCTGGCTTTACATGTCCCGCCTGG
CCGCCTTGCGTGAGTTTGCATTTATGAAGGCATTGCATACCAACGGCTTC
CCGACCCCCATCCCCATCGATCAAAATCGACACGTTGTGCTCATGTCGCG
CGTTGAGGGCTTTCCTATGTTTCAGGTGAAGCAAGGCAACATGGCAGAGC
CGGAGAAGGTCTTCCCTGTCTGTATCGATTTAATTGTCCGCATGGCCAGG
CGGGGGCTGGTGCATTGTGATTTCAATGAGTTCAACCTGATGATCGATAA
GGGGGGAAGGGTGACCCTCATCGACTTTCCGCAAATGATCTCGACCTCCC
ACATCAACGCCAAGGAAATGTTCGAGCGGGACGTGAGCGGCGTGGTGAAG
TTCTTCGCGATGAAGATGCACTATGTTCCCGAAGACTGCGAGATCCCAAA
ATTTGAAGATATTCTGGCGGAGGCCCAGGCGGCTCAGGCGGCACGCGCGA
CGAGAATAGTAACAACGGCGAAGGAAGGGGAGGAGGGAGGGAGCGGCGGA
GGGAAGGGAGGGGAAGGGATGTGGAATTTGGACGAGGCGGTGAAGGCGAG
TGGATATAAGGCGTCAGCTAAGGAGGAGGCAAGGTTTTTGGAGGTCTTCG
AGGCGGAGAGGAGGAGGAATGGGCCAGAAACGGGGGAATCTGCGGAGGAG
GAAGAGGAGGAGGAGGAGGATTTTGAAGAGGATTTTGAGGAGGAGGGGGA
TGAGGAGGATTATAAAGAGGAGGACGAGGAGGAGGGCTATGAGGAGGAGG
AGAAAGAGGGGTTGGAAAAAAGAGCTGGTGGTGAGGAGGTGTTGGGGAGA
GGAGAGAGGACTCGTGAGGGGACAGAGAGATAGAGTAGAGGCGGGGACCA
TCTGTAAACAAAAAAAGAAAGCAAATGAGAGTGCGTGGC

protein sequence of jgi.p|Nanoce1779_2|631523

>mRNA_6393-protein ID=mRNA_6393-protein|Name=jgi.p|Nanoce1779_2|631523|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MKLDVTCMRYLSKDDYRVLTAVEMGMKNHDVVPVELIVNIAKLRHGGAQK
FLNTLLRFKLIYNDKTTYDGYRLTYGGYDILALKTFYARGHISGVGQKVG
VGKESDIYVAQTESGDEVILKFHRLGRVSFRAVKNKRDYLQHRKSASWLY
MSRLAALREFAFMKALHTNGFPTPIPIDQNRHVVLMSRVEGFPMFQVKQG
NMAEPEKVFPVCIDLIVRMARRGLVHCDFNEFNLMIDKGGRVTLIDFPQM
ISTSHINAKEMFERDVSGVVKFFAMKMHYVPEDCEIPKFEDILAEAQAAQ
AARATRIVTTAKEGEEGGSGGGKGGEGMWNLDEAVKASGYKASAKEEARF
LEVFEAERRRNGPETGESAEEEEEEEEDFEEDFEEEGDEEDYKEEDEEEG
YEEEEKEGLEKRAGGEEVLGRGERTREGTER*

mRNA from alignment at scaffold_15:526519..528250-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6393 ID=mRNA_6393|Name=jgi.p|Nanoce1779_2|631523|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp|location=Sequence derived from alignment at scaffold_15:526519..528250- (Nannochloropsis oceanica)
AACCACAGGGGCCGCGACCGCCAGCCGAAATTGCGTGAAAGACCTCCCAC
CCTCTTCTACCGGTTCGACCTCCCCACCAACAAATCCATGAAGCTGGACG
TGACGTGCATGCGGTACCTCTCCAAGGACGACTACCGTGTCCTGACGGCC
GTGGAAATGGGTATGAAGAATCACGACGTGGTGCCCGTGGAGCTGATTGT
CAACATTGCCAAGCTCCGGCATGGCGGTGCGCAGAAGTTTCTCAATACCT
TACTGCGGTTCAAGCTCATTTACAACGATAAGACCACCTATGACGGTAGG
TGCTTGCGTGTGACATTTGAGGGAGGCTATGATTTGGATGTGATTGGGCG
TGTGCAATTGCTATTTTGGGCCTGGGATATACAATGTCGTCCGTCGGAGC
TTCGGCATCGTCATCATCTCACCCATCTTGTTGTCTTTTCCCTTCACAGG
CTATCGACTAACCTACGGCGGGTATGATATACTGGCACTCAAGACTTTCT
ATGCACGGGGGCACATTTCAGGGGTGAGTATATTGAAGGCGGATTGATAG
GACGGCGAGGAGCTGGGAATAGGAGAGAACTGAGCACACCTATTCAAGCA
AGCAAGCAAACAAACACCTTCTCACAGACTCCCCTCTTTCCGTCTCGTTC
TGCTCTCATAAGGTGGGTCAAAAAGTCGGTGTCGGCAAAGAATCCGATAT
CTATGTCGCGCAAACCGAGAGCGGGGACGAGGTCATCCTCAAATTCCACC
GCCTGGGCCGGGTCTCCTTCCGCGCCGTCAAAAACAAGCGCGACTACCTG
CAGCACCGCAAGTCGGCCTCCTGGCTTTACATGTCCCGCCTGGCCGCCTT
GCGTGAGTTTGCATTTATGAAGGCATTGCATACCAACGGCTTCCCGACCC
CCATCCCCATCGATCAAAATCGACACGTTGTGCTCATGTCGCGCGTTGAG
GGCTTTCCTATGTTTCAGGTGAAGCAAGGCAACATGGCAGAGCCGGAGAA
GGTCTTCCCTGTCTGTATCGATTTAATTGTCCGCATGGCCAGGCGGGGGC
TGGTGCATTGTGATTTCAATGAGTTCAACCTGATGATCGATAAGGGGGGA
AGGGTGACCCTCATCGACTTTCCGCAAATGATCTCGACCTCCCACATCAA
CGCCAAGGAAATGTTCGAGCGGGACGTGAGCGGCGTGGTGAAGTTCTTCG
CGATGAAGATGCACTATGTTCCCGAAGACTGCGAGATCCCAAAATTTGAA
GATATTCTGGCGGAGGCCCAGGCGGCTCAGGCGGCACGCGCGACGAGAAT
AGTAACAACGGCGAAGGAAGGGGAGGAGGGAGGGAGCGGCGGAGGGAAGG
GAGGGGAAGGGATGTGGAATTTGGACGAGGCGGTGAAGGCGAGTGGATAT
AAGGCGTCAGCTAAGGAGGAGGCAAGGTTTTTGGAGGTCTTCGAGGCGGA
GAGGAGGAGGAATGGGCCAGAAACGGGGGAATCTGCGGAGGAGGAAGAGG
AGGAGGAGGAGGATTTTGAAGAGGATTTTGAGGAGGAGGGGGATGAGGAG
GATTATAAAGAGGAGGACGAGGAGGAGGGCTATGAGGAGGAGGAGAAAGA
GGGGTTGGAAAAAAGAGCTGGTGGTGAGGAGGTGTTGGGGAGAGGAGAGA
GGACTCGTGAGGGGACAGAGAGATAGAGTAGAGGCGGGGACCATCTGTAA
ACAAAAAAAGAAAGCAAATGAGAGTGCGTGGC

Coding sequence (CDS) from alignment at scaffold_15:526519..528250-

>mRNA_6393 ID=mRNA_6393|Name=jgi.p|Nanoce1779_2|631523|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_15:526519..528250- (Nannochloropsis oceanica)
GTGGGTCAAAAAGTCGGTGTCGGCAAAGAATCCGATATCTATGTCGCGCA
AACCGAGAGCGGGGACGAGGTCATCCTCAAATTCCACCGCCTGGGCCGGG
TCTCCTTCCGCGCCGTCAAAAACAAGCGCGACTACCTGCAGCACCGCAAG
TCGGCCTCCTGGCTTTACATGTCCCGCCTGGCCGCCTTGCGTGAGTTTGC
ATTTATGAAGGCATTGCATACCAACGGCTTCCCGACCCCCATCCCCATCG
ATCAAAATCGACACGTTGTGCTCATGTCGCGCGTTGAGGGCTTTCCTATG
TTTCAGGTGAAGCAAGGCAACATGGCAGAGCCGGAGAAGGTCTTCCCTGT
CTGTATCGATTTAATTGTCCGCATGGCCAGGCGGGGGCTGGTGCATTGTG
ATTTCAATGAGTTCAACCTGATGATCGATAAGGGGGGAAGGGTGACCCTC
ATCGACTTTCCGCAAATGATCTCGACCTCCCACATCAACGCCAAGGAAAT
GTTCGAGCGGGACGTGAGCGGCGTGGTGAAGTTCTTCGCGATGAAGATGC
ACTATGTTCCCGAAGACTGCGAGATCCCAAAATTTGAAGATATTCTGGCG
GAGGCCCAGGCGGCTCAGGCGGCACGCGCGACGAGAATAGTAACAACGGC
GAAGGAAGGGGAGGAGGGAGGGAGCGGCGGAGGGAAGGGAGGGGAAGGGA
TGTGGAATTTGGACGAGGCGGTGAAGGCGAGTGGATATAAGGCGTCAGCT
AAGGAGGAGGCAAGGTTTTTGGAGGTCTTCGAGGCGGAGAGGAGGAGGAA
TGGGCCAGAAACGGGGGAATCTGCGGAGGAGGAAGAGGAGGAGGAGGAGG
ATTTTGAAGAGGATTTTGAGGAGGAGGGGGATGAGGAGGATTATAAAGAG
GAGGACGAGGAGGAGGGCTATGAGGAGGAGGAGAAAGAGGGGTTGGAAAA
AAGAGCTGGTGGTGAGGAGGTGTTGGGGAGAGGAGAGAGGACTCGTGAGG
GGACAGAGAGATAGGCTATCGACTAACCTACGGCGGGTATGATATACTGG
CACTCAAGACTTTCTATGCACGGGGGCACATTTCAGGGATGAAGCTGGAC
GTGACGTGCATGCGGTACCTCTCCAAGGACGACTACCGTGTCCTGACGGC
CGTGGAAATGGGTATGAAGAATCACGACGTGGTGCCCGTGGAGCTGATTG
TCAACATTGCCAAGCTCCGGCATGGCGGTGCGCAGAAGTTTCTCAATACC
TTACTGCGGTTCAAGCTCATTTACAACGATAAGACCACCTATGACGGTGG
GTCAAAAAGTCGGTGTCGGCAAAGAATCCGATATCTATGTCGCGCAAACC
GAGAGCGGGGACGAGGTCATCCTCAAATTCCACCGCCTGGGCCGGGTCTC
CTTCCGCGCCGTCAAAAACAAGCGCGACTACCTGCAGCACCGCAAGTCGG
CCTCCTGGCTTTACATGTCCCGCCTGGCCGCCTTGCGTGAGTTTGCATTT
ATGAAGGCATTGCATACCAACGGCTTCCCGACCCCCATCCCCATCGATCA
AAATCGACACGTTGTGCTCATGTCGCGCGTTGAGGGCTTTCCTATGTTTC
AGGTGAAGCAAGGCAACATGGCAGAGCCGGAGAAGGTCTTCCCTGTCTGT
ATCGATTTAATTGTCCGCATGGCCAGGCGGGGGCTGGTGCATTGTGATTT
CAATGAGTTCAACCTGATGATCGATAAGGGGGGAAGGGTGACCCTCATCG
ACTTTCCGCAAATGATCTCGACCTCCCACATCAACGCCAAGGAAATGTTC
GAGCGGGACGTGAGCGGCGTGGTGAAGTTCTTCGCGATGAAGATGCACTA
TGTTCCCGAAGACTGCGAGATCCCAAAATTTGAAGATATTCTGGCGGAGG
CCCAGGCGGCTCAGGCGGCACGCGCGACGAGAATAGTAACAACGGCGAAG
GAAGGGGAGGAGGGAGGGAGCGGCGGAGGGAAGGGAGGGGAAGGGATGTG
GAATTTGGACGAGGCGGTGAAGGCGAGTGGATATAAGGCGTCAGCTAAGG
AGGAGGCAAGGTTTTTGGAGGTCTTCGAGGCGGAGAGGAGGAGGAATGGG
CCAGAAACGGGGGAATCTGCGGAGGAGGAAGAGGAGGAGGAGGAGGATTT
TGAAGAGGATTTTGAGGAGGAGGGGGATGAGGAGGATTATAAAGAGGAGG
ACGAGGAGGAGGGCTATGAGGAGGAGGAGAAAGAGGGGTTGGAAAAAAGA
GCTGGTGGTGAGGAGGTGTTGGGGAGAGGAGAGAGGACTCGTGAGGGGAC
AGAGAGATAGGCTATCGACTAACCTACGGCGGGTATGATATACTGGCACT
CAAGACTTTCTATGCACGGGGGCACATTTCAGGGATGAAGCTGGACGTGA
CGTGCATGCGGTACCTCTCCAAGGACGACTACCGTGTCCTGACGGCCGTG
GAAATGGGTATGAAGAATCACGACGTGGTGCCCGTGGAGCTGATTGTCAA
CATTGCCAAGCTCCGGCATGGCGGTGCGCAGAAGTTTCTCAATACCTTAC
TGCGGTTCAAGCTCATTTACAACGATAAGACCACCTATGACGGTGGGTCA
AAAAGTCGGTGTCGGCAAAGAATCCGATATCTATGTCGCGCAAACCGAGA
GCGGGGACGAGGTCATCCTCAAATTCCACCGCCTGGGCCGGGTCTCCTTC
CGCGCCGTCAAAAACAAGCGCGACTACCTGCAGCACCGCAAGTCGGCCTC
CTGGCTTTACATGTCCCGCCTGGCCGCCTTGCGTGAGTTTGCATTTATGA
AGGCATTGCATACCAACGGCTTCCCGACCCCCATCCCCATCGATCAAAAT
CGACACGTTGTGCTCATGTCGCGCGTTGAGGGCTTTCCTATGTTTCAGGT
GAAGCAAGGCAACATGGCAGAGCCGGAGAAGGTCTTCCCTGTCTGTATCG
ATTTAATTGTCCGCATGGCCAGGCGGGGGCTGGTGCATTGTGATTTCAAT
GAGTTCAACCTGATGATCGATAAGGGGGGAAGGGTGACCCTCATCGACTT
TCCGCAAATGATCTCGACCTCCCACATCAACGCCAAGGAAATGTTCGAGC
GGGACGTGAGCGGCGTGGTGAAGTTCTTCGCGATGAAGATGCACTATGTT
CCCGAAGACTGCGAGATCCCAAAATTTGAAGATATTCTGGCGGAGGCCCA
GGCGGCTCAGGCGGCACGCGCGACGAGAATAGTAACAACGGCGAAGGAAG
GGGAGGAGGGAGGGAGCGGCGGAGGGAAGGGAGGGGAAGGGATGTGGAAT
TTGGACGAGGCGGTGAAGGCGAGTGGATATAAGGCGTCAGCTAAGGAGGA
GGCAAGGTTTTTGGAGGTCTTCGAGGCGGAGAGGAGGAGGAATGGGCCAG
AAACGGGGGAATCTGCGGAGGAGGAAGAGGAGGAGGAGGAGGATTTTGAA
GAGGATTTTGAGGAGGAGGGGGATGAGGAGGATTATAAAGAGGAGGACGA
GGAGGAGGGCTATGAGGAGGAGGAGAAAGAGGGGTTGGAAAAAAGAGCTG
GTGGTGAGGAGGTGTTGGGGAGAGGAGAGAGGACTCGTGAGGGGACAGAG
AGATAGGCTATCGACTAACCTACGGCGGGTATGATATACTGGCACTCAAG
ACTTTCTATGCACGGGGGCACATTTCAGGGATGAAGCTGGACGTGACGTG
CATGCGGTACCTCTCCAAGGACGACTACCGTGTCCTGACGGCCGTGGAAA
TGGGTATGAAGAATCACGACGTGGTGCCCGTGGAGCTGATTGTCAACATT
GCCAAGCTCCGGCATGGCGGTGCGCAGAAGTTTCTCAATACCTTACTGCG
GTTCAAGCTCATTTACAACGATAAGACCACCTATGACG

Synonyms

Publications