jgi.p|Nanoce1779_2|594854, mRNA_6392 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594854
Unique Name	mRNA_6392
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1314
Alignment location	scaffold_15:524516..526500 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594940
Track	FilteredModels2
ProteinId	594854

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:524516..526500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594854	gene_6392	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594854	mRNA_6392-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6392	CDS_6392	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:524516..526500+
coding sequence from alignment at scaffold_15:524516..526500+

mRNA sequence

>mRNA_6392 ID=mRNA_6392|Name=jgi.p|Nanoce1779_2|594854|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
ACAGAACGCAACATTATGCAGATCACCAAGGCCTTCCTGCTGGCGGCGGC
CGCAGCGACCACATTTCTACTTTACGCCGAGGCCTTCATGCCTTTGCCCT
CCGCGACCAAGTGCGCCAACAAGCTGAGCCTGCCCGTCCCCTTGCGTGCC
TTGACGGCGACATCCTTGCAGCCACGGATCGGGGCCATCACTCCTCTGTG
GGCTACCGGCGAGGGCAGCGGGGAAACCGCCTTCAAAATCCAAGTGACGG
GGAACAACATCGAAGTCACCCCAGCGATGCGCGAATACGTGGAAAAGAAA
ATCGGCAAGGTCTTGTCGAAGCTTCCCCTCCACGACGCTGTCAATAAAGT
GGACGCCCACCTCTCCGTTGTACTCCTCGCACATGCTGCCAAGCACTCTC
ACACGGCCGAAGTGACTCTGTTCATGAAGGGTGGCCAGGTCCTCCGCGCG
TCGGAAGAGACCGATTACATGTACGCGTCAATCGATCTGGTCTCCCACCG
CATCACCAGACTGCTCCGTAAATTTAAGGATCGGAAACTTGGCAAGCGTA
AGGAGGTCAACTTCGAGGAGGACGGGGAAGCTGAGATGGAGGCCTTGAGC
GAGGCAATGGCGGGGGCAGCAGGAGAGGGGGGATTCCAGGACCCGGCAAA
GGGTGTGGACATGAAGGTTGTGAAGAAGAAGCAGTTCGACATGCCGGCTA
TGTCGACTGCGGACGCCATCGTATGCTTGGACTATATTGGCCACGACTTC
TACGTATACCGCAACGAGGCCTCGGACGAGATCAACGTGGTGTACAAGCG
GAAGCAGGGCGGGGTGGGCGTGATTGAGCCCCTGAAGTAGACCATGGCAC
GACGGGGAGGAGTCAGAGGGGAGCGAGGGATCGACCGATGAAGAAAGAGA
AGGCGCGAGCGCGTTTTGTTTTTTGCGCATTTTGTTTCTTGTTATCACGC
TCTCTCATGCATGCTCGGCACAGCAGCGCTCATAGATATCGCACCCTTGA
TAGGCATAATAGCATCGCTAACGGGCAGGAGAGGAGGAGTTATTAAATAA
GATATGAATTAGAAGCATTCGAGAAGGACTGGCACAGAAAAGAAACAGGA
GGTTGCATGCAGAGCAAGGCGTGTGGGAGGATAAAAGGAGAGAGCTGCAG
CGGTCCTCCTGAGCTTTGTCTAACTCGATTAGGAAGACGCGGTCCAGGAG
GGATGTATAGGTCTAAAAGAATTAAAAAAAAAATCCACTCCATTCATATT
CATTCGCAGGCCAGTCGGCTATTAATCAAGACAAACGAGAGAAGTAAGGT
GGGAAGTATGATGA

protein sequence of jgi.p|Nanoce1779_2|594854

>mRNA_6392-protein ID=mRNA_6392-protein|Name=jgi.p|Nanoce1779_2|594854|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MQITKAFLLAAAAATTFLLYAEAFMPLPSATKCANKLSLPVPLRALTATS
LQPRIGAITPLWATGEGSGETAFKIQVTGNNIEVTPAMREYVEKKIGKVL
SKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETD
YMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAEMEALSEAMAG
AAGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRN
EASDEINVVYKRKQGGVGVIEPLK*

mRNA from alignment at scaffold_15:524516..526500+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6392 ID=mRNA_6392|Name=jgi.p|Nanoce1779_2|594854|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp|location=Sequence derived from alignment at scaffold_15:524516..526500+ (Nannochloropsis oceanica)
ACAGAACGCAACATTATGCAGATCACCAAGGCCTTCCTGCTGGCGGCGGC
CGCAGCGACCACATTTCTACTTTACGCCGAGGCCTTCATGCCTTTGCCCT
CCGCGACCAAGTGCGCCAACAAGCTGAGCCTGCCCGTCCCCTTGCGTGCC
TTGACGGCGACATCCTTGCAGCCACGGATCGGGGCCATCACTCCTCTGTG
GGCTACCGGCGAGGGCAGCGGGGAAAGTAAGTATTCTTTTCGGGGGTTTG
TGATTGTTCTGTCCCATTTATAGACTGATTTTTCTTTTCTCCTTGACCGC
AGCTTTTCTTGATATGACAAAGACTTAGCTCAGTTTGCAGTATCTGTCTC
TGTTGCGTTCATGGATTGTTTGTTGCGTCTCCGTCTTCCCTCGTTTTCAT
TTGTCATTTTCGTCGTCCAATTGACCTTTTATCTGTACTTCAATCCGCCG
TGTTGGCTTTCGTTCACACATGACAAAGACCCATGCGGCATCGTCCGCTT
CTCTCATTTTTGCCATTCTCATGCTAAGCTATACTCTCTCTATATCCGCA
GCCGCCTTCAAAATCCAAGTGACGGGGAACAACATCGAAGTCACCCCAGC
GATGCGCGAATACGTGGAAAAGAAAATCGGCAAGGTCTTGTCGAAGCTTC
CCCTCCACGACGCTGTCAATAAAGTGGACGCCCACCTCTCCGTTGTACTC
CTCGCACATGCTGCCAAGCACTCTCACACGGCCGAAGTGACTCTGTTCAT
GAAGGGTGGCCAGGTCCTCCGCGCGTCGGAAGAGACCGATTACATGTACG
CGTCAATCGATCTGGTCTCCCACCGCATCACCAGACTGCTCCGTAAATTT
AAGGATCGGAAACTTGGCAAGCGTAAGGAGGTCAACTTCGAGGAGGACGG
GGAAGCTGAGATGGAGGCCTTGAGCGAGGCAATGGCGGGGGCAGCAGGAG
AGGGGGGATTCCAGGACCCGGCAAAGGGTGTGGACATGAAGGTTGTGAAG
AAGAAGCAGTTCGACATGCCGGCTATGTCGGTGAGTGCAGGAGGGGGGGG
GAATAAGGGGGAGGGAGGGAAAGAGAAGCGGAGGCCCATTGAGTTCTTGG
CGCGCCCGCTATTTTTCTTGTCAATTTTGCTCGCGCCGACATGGGGAGTC
TTTTTGGAGCCGCCCTCGCGGCAATCCAGTGTGCAAGCGTGAAACCCAGG
GTGTAAGCATAGAAAGGAACTGTTTATGTCTCTGTGCGAGGTCTTATCTC
TTGAATAATTGAGAGATTACTCTTGCTGACGGATGGTGTGACAATTTTTC
CGTCTCAAAGCGTGACGGGGTAACTGACACTCCTTCCCTCCCTCCTTCCC
TCCCTCCCTCACTCCCTCTTTTCAAGACTGCGGACGCCATCGTATGCTTG
GACTATATTGGCCACGACTTCTACGTATACCGCAACGAGGCCTCGGACGA
GATCAACGTGGTGTACAAGCGGAAGCAGGGCGGGGTGGGCGTGATTGAGC
CCCTGAAGTAGACCATGGCACGACGGGGAGGAGTCAGAGGGGAGCGAGGG
ATCGACCGATGAAGAAAGAGAAGGCGCGAGCGCGTTTTGTTTTTTGCGCA
TTTTGTTTCTTGTTATCACGCTCTCTCATGCATGCTCGGCACAGCAGCGC
TCATAGATATCGCACCCTTGATAGGCATAATAGCATCGCTAACGGGCAGG
AGAGGAGGAGTTATTAAATAAGATATGAATTAGAAGCATTCGAGAAGGAC
TGGCACAGAAAAGAAACAGGAGGTTGCATGCAGAGCAAGGCGTGTGGGAG
GATAAAAGGAGAGAGCTGCAGCGGTCCTCCTGAGCTTTGTCTAACTCGAT
TAGGAAGACGCGGTCCAGGAGGGATGTATAGGTCTAAAAGAATTAAAAAA
AAAATCCACTCCATTCATATTCATTCGCAGGCCAGTCGGCTATTAATCAA
GACAAACGAGAGAAGTAAGGTGGGAAGTATGATGA

Coding sequence (CDS) from alignment at scaffold_15:524516..526500+

>mRNA_6392 ID=mRNA_6392|Name=jgi.p|Nanoce1779_2|594854|organism=Nannochloropsis oceanica|type=CDS|length=2475bp|location=Sequence derived from alignment at scaffold_15:524516..526500+ (Nannochloropsis oceanica)
ATGCAGATCACCAAGGCCTTCCTGCTGGCGGCGGCCGCAGCGACCACATT
TCTACTTTACGCCGAGGCCTTCATGCCTTTGCCCTCCGCGACCAAGTGCG
CCAACAAGCTGAGCCTGCCCGTCCCCTTGCGTGCCTTGACGGCGACATCC
TTGCAGCCACGGATCGGGGCCATCACTCCTCTGTGGGCTACCGGCGAGGG
CAGCGGGGAAACCGCCTTCAAAATCCAAGTGACGGGGAACAACATCGAAG
TCACCCCAGCGATGCGCGAATACGTGGAAAAGAAAATCGGCAAGGTCTTG
TCGAAGCTTCCCCTCCACGACGCTGTCAATAAAGTGGACGCCCACCTCTC
CGTTGTACTCCTCGCACATGCTGCCAAGCACTCTCACACGGCCGAAGTGA
CTCTGTTCATGAAGGGTGGCCAGGTCCTCCGCGCGTCGGAAGAGACCGAT
TACATGTACGCGTCAATCGATCTGGTCTCCCACCGCATCACCAGACTGCT
CCGTAAATTTAAGGATCGGAAACTTGGCAAGCGTAAGGAGGTCAACTTCG
AGGAGGACGGGGAAGCTGAGATGGAGGCCTTGAGCGAGGCAATGGCGGGG
GCAGCAGGAGAGGGGGGATTCCAGGACCCGGCAAAGGGTGTGGACATGAA
GGTTGTGAAGAAGAAGCAGTTCGACATGCCGGCTATGTCGACTGCGGACG
CCATCGTATGCTTGGACTATATTGGCCACGACTTCTACGTATACCGCAAC
GAGGCCTCGGACGAGATCAACGTGGTGTACAAGCGGAAGCAGGGCGGGGT
GGGCGTGATTGAGCCCCTGAAGTAGATGCAGATCACCAAGGCCTTCCTGC
TGGCGGCGGCCGCAGCGACCACATTTCTACTTTACGCCGAGGCCTTCATG
CCTTTGCCCTCCGCGACCAAGTGCGCCAACAAGCTGAGCCTGCCCGTCCC
CTTGCGTGCCTTGACGGCGACATCCTTGCAGCCACGGATCGGGGCCATCA
CTCCTCTGTGGGCTACCGGCGAGGGCAGCGGGGAAACCGCCTTCAAAATC
CAAGTGACGGGGAACAACATCGAAGTCACCCCAGCGATGCGCGAATACGT
GGAAAAGAAAATCGGCAAGGTCTTGTCGAAGCTTCCCCTCCACGACGCTG
TCAATAAAGTGGACGCCCACCTCTCCGTTGTACTCCTCGCACATGCTGCC
AAGCACTCTCACACGGCCGAAGTGACTCTGTTCATGAAGGGTGGCCAGGT
CCTCCGCGCGTCGGAAGAGACCGATTACATGTACGCGTCAATCGATCTGG
TCTCCCACCGCATCACCAGACTGCTCCGTAAATTTAAGGATCGGAAACTT
GGCAAGCGTAAGGAGGTCAACTTCGAGGAGGACGGGGAAGCTGAGATGGA
GGCCTTGAGCGAGGCAATGGCGGGGGCAGCAGGAGAGGGGGGATTCCAGG
ACCCGGCAAAGGGTGTGGACATGAAGGTTGTGAAGAAGAAGCAGTTCGAC
ATGCCGGCTATGTCGACTGCGGACGCCATCGTATGCTTGGACTATATTGG
CCACGACTTCTACGTATACCGCAACGAGGCCTCGGACGAGATCAACGTGG
TGTACAAGCGGAAGCAGGGCGGGGTGGGCGTGATTGAGCCCCTGAAGTAG
ATGCAGATCACCAAGGCCTTCCTGCTGGCGGCGGCCGCAGCGACCACATT
TCTACTTTACGCCGAGGCCTTCATGCCTTTGCCCTCCGCGACCAAGTGCG
CCAACAAGCTGAGCCTGCCCGTCCCCTTGCGTGCCTTGACGGCGACATCC
TTGCAGCCACGGATCGGGGCCATCACTCCTCTGTGGGCTACCGGCGAGGG
CAGCGGGGAAACCGCCTTCAAAATCCAAGTGACGGGGAACAACATCGAAG
TCACCCCAGCGATGCGCGAATACGTGGAAAAGAAAATCGGCAAGGTCTTG
TCGAAGCTTCCCCTCCACGACGCTGTCAATAAAGTGGACGCCCACCTCTC
CGTTGTACTCCTCGCACATGCTGCCAAGCACTCTCACACGGCCGAAGTGA
CTCTGTTCATGAAGGGTGGCCAGGTCCTCCGCGCGTCGGAAGAGACCGAT
TACATGTACGCGTCAATCGATCTGGTCTCCCACCGCATCACCAGACTGCT
CCGTAAATTTAAGGATCGGAAACTTGGCAAGCGTAAGGAGGTCAACTTCG
AGGAGGACGGGGAAGCTGAGATGGAGGCCTTGAGCGAGGCAATGGCGGGG
GCAGCAGGAGAGGGGGGATTCCAGGACCCGGCAAAGGGTGTGGACATGAA
GGTTGTGAAGAAGAAGCAGTTCGACATGCCGGCTATGTCGACTGCGGACG
CCATCGTATGCTTGGACTATATTGGCCACGACTTCTACGTATACCGCAAC
GAGGCCTCGGACGAGATCAACGTGGTGTACAAGCGGAAGCAGGGCGGGGT
GGGCGTGATTGAGCCCCTGAAGTAG

Synonyms

Publications