jgi.p|Nanoce1779_2|594852, mRNA_6391 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594852
Unique NamemRNA_6391
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2243
Alignment locationscaffold_15:521977..524219 -

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Properties
Property NameValue
TranscriptId594938
TrackFilteredModels2
ProteinId594852
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:521977..524219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594852gene_6391Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594852mRNA_6391-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6391CDS_6391Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6391 ID=mRNA_6391|Name=jgi.p|Nanoce1779_2|594852|organism=Nannochloropsis oceanica|type=mRNA|length=2243bp
GCACCGAGCATCAAGGGGGCTGATGTTTTTTGTACCACGCACACTCACTC
TTCTCAACGGTCATTCAAGATCTTTCCTTTCCCCTCGCGTCCACCGTCCC
TCTGGTGCGTGTCTGCTCACTGTGGGCGTTGGAGGACGAGGACAATGATA
TCAATAAGCAAGGGAAGCGAAAGAGAGGAGTGTCCATGATGTGATAGAGC
CGCCCGCTGCAGTATAGCAAAATGAAAGCGCCGTCGTTCCGCTCTCACAC
AATTGTTCTCTCTGTGACGCTCCTCATCGCAAACAACACACAAGTGTAGT
AACACCACTGCACCATTATCCTTGTATCTCTATGGCTTATTTCAGCTAAT
ACCCTGCCGATTTTCTTGACCATAACCCCACCCAAAACTCTCCTCGCTAA
AACTCCAGGCACTCAGCCAGCGGATCCGCAAGGAGCAGAAGCCCTATTCA
ACGTAAATGGAGATCAATGCCAATGGCGGTGAGGTACCCCTGAGCTGGCG
ACATCTCCAGCAGCTTGACAGCAGTAGTGATGGCCCCAGCCACCGCGACG
GGGTCGAGGAGGACGACACGCACTCCATGCACTCCCTGGCCAGCCGCGTC
TCTAACGCTGGCAGTGCCTACTCAGCCGCCACCTTTTACAGCTTCAGTAC
CTCCAACTACTCGGGGTTTTCCGGTGCAGGCGATCTGGCACGACGTGGCT
CTCCGCAAAAGAAGCGCCATCACGTCCACCCGCAAGACTTGGATCCCAAT
GCGTGTTACGACGTTGATTGGGTGCAAGATGATTCGGCCTTCTCCTGCAT
GGTCTGCACGGCTGATTTCTCTCCCCTCTTGCGCCGCAAGCACCATTGCC
GTGCCTGTGGCCGTGTGGTGTGTTCTAGCTGCTCCAGGGCGCGTGTTTTG
GTGGTGGGTTTACGAGGACCACAGAAGGCATGCACGGATTGTGTACGTGC
AGCCGAGAAACTGCGGGCGTGTGAGAGCATCAGTGAGGATTTTGAAGGAG
CGACTCGTAATACCGAGGAAGTGCAGGAAGGAGATGAAGGAATGGAGAGG
GTAGAGGAGGAAGGAGAAGAAGAGGAAGAAGAAGATGGGGGTGAGGAAGA
GGATGAGAAAGGCTGCAGAACTGGTGGGTTCACTCGCAGCCCCGGTGGAA
TAAGCACCAGCACCAGCAACAGCACGGCTCGCGTGGAACGGAAAGTGGAG
TGCGGGAAGCAAGATGAGGGTGCCACAGCTGCTGCTGCTGCCAAGAAGCT
GCAAGAGATACTGGGGGATGAGGAGGAGTTCATTCCTCGTCGGAGGGAGA
AAAATACGAGGGTTGAGGGGAAGCGGTCATCGTCGTCGACCGTTGGGATG
TTGGCCATGGGGTTTACAGCCCTGGCTGTGGGCTCGGTGTTAGCATTGAA
TCCAAAGTTGCTCTCGACGGTATCGGCGGTGATAGGACGGGTGGGGGGGA
GGAGGTGAAGAGGCGGTAATGGTGTGGTAAACGGAGGAAAAGAAGCGGGG
GGGGAGGCAATAACGATAGGGCGGAGGACATTGAGGTTTCATTCGGACGC
CATATGTCAAGGTTGTAAGAGAAGAAAATGATGACTAGTTCAGCAATAAC
TAAAAAGAGACACTGTGAGTCAAATGCGTCGAAACAGATGGGGAAGGAGA
CCGAAAGAGCACACACAGCGCAATTGCGAGAAGAACGACTGCCGGTTGAT
TCCAAGCATTATTGCAAAGCGAGAGAGGAAAGCGTCTCTTATGCCTTTCA
AGGCGCAAATTAATGGAAGGCCAGGAAAGAGCATGCATACAAACATACCT
ACACAGACGAGAAAACAGACTTCTACACATGTACTACCATCACACGATCC
GCTTATTTCGTCATATTGTAATTTTACCTTTACGATCAGTCGTGATATTT
ACATCTGTTCCAAGGAGCAAAGGCCAAAAAAAAAATCAACGTCAACATAT
AAAATGAATGGTTGTCCCCTGTTGAGTGTTATCATGTGCATACATACGCA
GCAAACTGGGGGGATCTATAAGAGAAATATTGAGGTTCGCAAGCACCATA
GAAGGGAAAAGTCAGAGCCCAATCAGGGATTGAAGAAAAATTCGGGGGTG
GGGGGGGACACTTAAACAAAATACACTACTCTTTCGGGGTTCAAACGGTA
TCTAATGGCATATATACATCAGCATGCATTGCCCCCCAACCTCTCGTTCT
TCCTTCCTTCAACCCCGTTCCCTCCCCCTCCCCGTCCCCGCCC
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protein sequence of jgi.p|Nanoce1779_2|594852

>mRNA_6391-protein ID=mRNA_6391-protein|Name=jgi.p|Nanoce1779_2|594852|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MEINANGGEVPLSWRHLQQLDSSSDGPSHRDGVEEDDTHSMHSLASRVSN
AGSAYSAATFYSFSTSNYSGFSGAGDLARRGSPQKKRHHVHPQDLDPNAC
YDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVV
GLRGPQKACTDCVRAAEKLRACESISEDFEGATRNTEEVQEGDEGMERVE
EEGEEEEEEDGGEEEDEKGCRTGGFTRSPGGISTSTSNSTARVERKVECG
KQDEGATAAAAAKKLQEILGDEEEFIPRRREKNTRVEGKRSSSSTVGMLA
MGFTALAVGSVLALNPKLLSTVSAVIGRVGGRR*
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mRNA from alignment at scaffold_15:521977..524219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6391 ID=mRNA_6391|Name=jgi.p|Nanoce1779_2|594852|organism=Nannochloropsis oceanica|type=mRNA|length=2243bp|location=Sequence derived from alignment at scaffold_15:521977..524219- (Nannochloropsis oceanica)
GCACCGAGCATCAAGGGGGCTGATGTTTTTTGTACCACGCACACTCACTC
TTCTCAACGGTCATTCAAGATCTTTCCTTTCCCCTCGCGTCCACCGTCCC
TCTGGTGCGTGTCTGCTCACTGTGGGCGTTGGAGGACGAGGACAATGATA
TCAATAAGCAAGGGAAGCGAAAGAGAGGAGTGTCCATGATGTGATAGAGC
CGCCCGCTGCAGTATAGCAAAATGAAAGCGCCGTCGTTCCGCTCTCACAC
AATTGTTCTCTCTGTGACGCTCCTCATCGCAAACAACACACAAGTGTAGT
AACACCACTGCACCATTATCCTTGTATCTCTATGGCTTATTTCAGCTAAT
ACCCTGCCGATTTTCTTGACCATAACCCCACCCAAAACTCTCCTCGCTAA
AACTCCAGGCACTCAGCCAGCGGATCCGCAAGGAGCAGAAGCCCTATTCA
ACGTAAATGGAGATCAATGCCAATGGCGGTGAGGTACCCCTGAGCTGGCG
ACATCTCCAGCAGCTTGACAGCAGTAGTGATGGCCCCAGCCACCGCGACG
GGGTCGAGGAGGACGACACGCACTCCATGCACTCCCTGGCCAGCCGCGTC
TCTAACGCTGGCAGTGCCTACTCAGCCGCCACCTTTTACAGCTTCAGTAC
CTCCAACTACTCGGGGTTTTCCGGTGCAGGCGATCTGGCACGACGTGGCT
CTCCGCAAAAGAAGCGCCATCACGTCCACCCGCAAGACTTGGATCCCAAT
GCGTGTTACGACGTTGATTGGGTGCAAGATGATTCGGCCTTCTCCTGCAT
GGTCTGCACGGCTGATTTCTCTCCCCTCTTGCGCCGCAAGCACCATTGCC
GTGCCTGTGGCCGTGTGGTGTGTTCTAGCTGCTCCAGGGCGCGTGTTTTG
GTGGTGGGTTTACGAGGACCACAGAAGGCATGCACGGATTGTGTACGTGC
AGCCGAGAAACTGCGGGCGTGTGAGAGCATCAGTGAGGATTTTGAAGGAG
CGACTCGTAATACCGAGGAAGTGCAGGAAGGAGATGAAGGAATGGAGAGG
GTAGAGGAGGAAGGAGAAGAAGAGGAAGAAGAAGATGGGGGTGAGGAAGA
GGATGAGAAAGGCTGCAGAACTGGTGGGTTCACTCGCAGCCCCGGTGGAA
TAAGCACCAGCACCAGCAACAGCACGGCTCGCGTGGAACGGAAAGTGGAG
TGCGGGAAGCAAGATGAGGGTGCCACAGCTGCTGCTGCTGCCAAGAAGCT
GCAAGAGATACTGGGGGATGAGGAGGAGTTCATTCCTCGTCGGAGGGAGA
AAAATACGAGGGTTGAGGGGAAGCGGTCATCGTCGTCGACCGTTGGGATG
TTGGCCATGGGGTTTACAGCCCTGGCTGTGGGCTCGGTGTTAGCATTGAA
TCCAAAGTTGCTCTCGACGGTATCGGCGGTGATAGGACGGGTGGGGGGGA
GGAGGTGAAGAGGCGGTAATGGTGTGGTAAACGGAGGAAAAGAAGCGGGG
GGGGAGGCAATAACGATAGGGCGGAGGACATTGAGGTTTCATTCGGACGC
CATATGTCAAGGTTGTAAGAGAAGAAAATGATGACTAGTTCAGCAATAAC
TAAAAAGAGACACTGTGAGTCAAATGCGTCGAAACAGATGGGGAAGGAGA
CCGAAAGAGCACACACAGCGCAATTGCGAGAAGAACGACTGCCGGTTGAT
TCCAAGCATTATTGCAAAGCGAGAGAGGAAAGCGTCTCTTATGCCTTTCA
AGGCGCAAATTAATGGAAGGCCAGGAAAGAGCATGCATACAAACATACCT
ACACAGACGAGAAAACAGACTTCTACACATGTACTACCATCACACGATCC
GCTTATTTCGTCATATTGTAATTTTACCTTTACGATCAGTCGTGATATTT
ACATCTGTTCCAAGGAGCAAAGGCCAAAAAAAAAATCAACGTCAACATAT
AAAATGAATGGTTGTCCCCTGTTGAGTGTTATCATGTGCATACATACGCA
GCAAACTGGGGGGATCTATAAGAGAAATATTGAGGTTCGCAAGCACCATA
GAAGGGAAAAGTCAGAGCCCAATCAGGGATTGAAGAAAAATTCGGGGGTG
GGGGGGGACACTTAAACAAAATACACTACTCTTTCGGGGTTCAAACGGTA
TCTAATGGCATATATACATCAGCATGCATTGCCCCCCAACCTCTCGTTCT
TCCTTCCTTCAACCCCGTTCCCTCCCCCTCCCCGTCCCCGCCC
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Coding sequence (CDS) from alignment at scaffold_15:521977..524219-

>mRNA_6391 ID=mRNA_6391|Name=jgi.p|Nanoce1779_2|594852|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_15:521977..524219- (Nannochloropsis oceanica)
ATGGAGATCAATGCCAATGGCGGTGAGGTACCCCTGAGCTGGCGACATCT
CCAGCAGCTTGACAGCAGTAGTGATGGCCCCAGCCACCGCGACGGGGTCG
AGGAGGACGACACGCACTCCATGCACTCCCTGGCCAGCCGCGTCTCTAAC
GCTGGCAGTGCCTACTCAGCCGCCACCTTTTACAGCTTCAGTACCTCCAA
CTACTCGGGGTTTTCCGGTGCAGGCGATCTGGCACGACGTGGCTCTCCGC
AAAAGAAGCGCCATCACGTCCACCCGCAAGACTTGGATCCCAATGCGTGT
TACGACGTTGATTGGGTGCAAGATGATTCGGCCTTCTCCTGCATGGTCTG
CACGGCTGATTTCTCTCCCCTCTTGCGCCGCAAGCACCATTGCCGTGCCT
GTGGCCGTGTGGTGTGTTCTAGCTGCTCCAGGGCGCGTGTTTTGGTGGTG
GGTTTACGAGGACCACAGAAGGCATGCACGGATTGTGTACGTGCAGCCGA
GAAACTGCGGGCGTGTGAGAGCATCAGTGAGGATTTTGAAGGAGCGACTC
GTAATACCGAGGAAGTGCAGGAAGGAGATGAAGGAATGGAGAGGGTAGAG
GAGGAAGGAGAAGAAGAGGAAGAAGAAGATGGGGGTGAGGAAGAGGATGA
GAAAGGCTGCAGAACTGGTGGGTTCACTCGCAGCCCCGGTGGAATAAGCA
CCAGCACCAGCAACAGCACGGCTCGCGTGGAACGGAAAGTGGAGTGCGGG
AAGCAAGATGAGGGTGCCACAGCTGCTGCTGCTGCCAAGAAGCTGCAAGA
GATACTGGGGGATGAGGAGGAGTTCATTCCTCGTCGGAGGGAGAAAAATA
CGAGGGTTGAGGGGAAGCGGTCATCGTCGTCGACCGTTGGGATGTTGGCC
ATGGGGTTTACAGCCCTGGCTGTGGGCTCGGTGTTAGCATTGAATCCAAA
GTTGCTCTCGACGGTATCGGCGGTGATAGGACGGGTGGGGGGGAGGAGGT
GA
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Synonyms
Publications