jgi.p|Nanoce1779_2|594850, mRNA_6389 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594850
Unique NamemRNA_6389
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1116
Alignment locationscaffold_15:520404..521976 +

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Properties
Property NameValue
TranscriptId594936
TrackFilteredModels2
ProteinId594850
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:520404..521976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594850gene_6389Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594850mRNA_6389-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6389CDS_6389Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6389 ID=mRNA_6389|Name=jgi.p|Nanoce1779_2|594850|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
ACAGGGAATGCCATCTGCGGCTGGAGGACTAGGTTGACAACCACAACAAG
CGGTGGCGCATATAGAGGAGGCAGAAGAATAGCCGGAGCTCTCGCATATT
ATTGTTACCCTCCTCCCGGCCGCCTCCACACCTCTCTTCTCCCCCTCTCC
CGCCACGCCACACGACAACCGCCATGCCCCCCCGGCCTAGAGACGATCTA
CGCATCTCACAGGAAGACTGGTTCAAGTTTTCCAAGCTTGCGGCGGGCGG
CTTTACATTTGTCCTGGCCCTGTCCGGCTTTCAATGTATGCAAGGCCTTG
CTCGTATTTCGGCCGCCCATCCCCTCGCAAGCGCCCTGGGCCTCATCTCG
GTTGGCACAGGGTCTGTCATGGCCTCTCTCGTCGCGGATCAAGCACCTTC
CGCCCTCTGTAAGGCTATGGGTTGGGCTCCGCCGACGCATTCGGCCCGTA
AAATCACCTGCGGCAAGGATCTCTTATCGCCCCAAAAATGTTCCTCATTG
TGGCAAGACCCGGACCAAAAGGAAGAAGAGCAGATACTGCGAGTTTTGCG
GGCAGCCATGATGGGGATCGTGATATTCAAGGGCTTTGGGGGACGATTCT
CTAGCGTGGCTCCTAGTGACGTCGCCCGCCCGGGAGCCTTTTTCCGTATG
AAAGGATCACTTCCTGCTACGTACGAATATGCCAGCCAGGTGCAGAAGCG
AGCGCTGGATGGTTTTGGGGCGAAGTTCGGGTGCCATTCTTGTGGACGGA
AGGAAATGTTGCAGTATATTGGTGATCACATGCCGCCCAAGAAGGTGGCG
ATGGCGATGAATCGGAAGTGGTGGCGGTGGTTGTTTAATAAGAGAATAAC
GCAACGTTTTATGCCACAATGCCAGCCATGTTCTAGCATTCAAAGTGCGG
CCGTGCGGGCCAACAAGCAAGTACTGATCTACCACTGGTACCACGTGAGC
TCCCTCCGCCGGTACCACGTCACGGGACTTGTCGCGGAGGGGGCCCGTCT
ACTCGCAGGCGACGAATGGCTAGATAGTACCATGAAAGATGCGGTGGAGG
AGGCCAAGTGCTGGTGGCAGGGTGCGACTGAATTGAGGGACGACTTGCAG
CGGCGGTGGAAGTAGG
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protein sequence of jgi.p|Nanoce1779_2|594850

>mRNA_6389-protein ID=mRNA_6389-protein|Name=jgi.p|Nanoce1779_2|594850|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MPPRPRDDLRISQEDWFKFSKLAAGGFTFVLALSGFQCMQGLARISAAHP
LASALGLISVGTGSVMASLVADQAPSALCKAMGWAPPTHSARKITCGKDL
LSPQKCSSLWQDPDQKEEEQILRVLRAAMMGIVIFKGFGGRFSSVAPSDV
ARPGAFFRMKGSLPATYEYASQVQKRALDGFGAKFGCHSCGRKEMLQYIG
DHMPPKKVAMAMNRKWWRWLFNKRITQRFMPQCQPCSSIQSAAVRANKQV
LIYHWYHVSSLRRYHVTGLVAEGARLLAGDEWLDSTMKDAVEEAKCWWQG
ATELRDDLQRRWK*
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mRNA from alignment at scaffold_15:520404..521976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6389 ID=mRNA_6389|Name=jgi.p|Nanoce1779_2|594850|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp|location=Sequence derived from alignment at scaffold_15:520404..521976+ (Nannochloropsis oceanica)
ACAGGGAATGCCATCTGCGGCTGGAGGACTAGGTTGACAACCACAACAAG
CGGTGGCGCATATAGAGGAGGCAGAAGAATAGCCGGAGCTCTCGCATATT
ATTGTTACCCTCCTCCCGGCCGCCTCCACACCTCTCTTCTCCCCCTCTCC
CGCCACGCCACACGACAACCGCCATGCCCCCCCGGCCTAGAGACGATCTA
CGCATCTCACAGGAAGACTGGTTCAAGTTTTCCAAGCTTGCGGCGGGCGG
CTTTACATTTGTCCTGGCCCTGTCCGGCTTTCAATGTATGCAAGGCCTTG
CTCGTATTTCGGCCGCCCATCCCCTCGCAAGCGCCCTGGGCCTCATCTCG
GTTGGCACAGGGTCTGTCATGGCCTCTCTCGTCGCGGATCAAGCACCTTC
CGCCCTCTGTAAGGCTATGGGTTGGGCTCCGCCGACGCATTCGGCCCGTA
AAATCACCTGCGGCAAGGATCTCTTATCGCCCCAAAAATGTTCCTCATTG
TGGCAAGACCCGGACCAAAAGGAAGAAGAGCAGATACTGCGAGTTTTGCG
GGCAGCCATGATGGGGATCGTGATATTCAAGGGCTTTGGGGGACGATTCT
CTAGCGTGGCTCCTAGTGACGTCGCCCGCCCGGGAGCCTTTTTCCGTATG
AAAGGATCACTTCCTGCTACGTACGAATATGCCAGCCAGGTGCAGAAGCG
AGCGCTGGATGGTTTTGGGGCGAAGTTCGGGTGCCATTCTTGTGGACGGA
AGGAAATGTTGCAGTATATTGGTGATCACATGCCGCCCAAGAAGGTGGCG
ATGGCGATGAATCGGAAGTGGTGGCGGTGGTTGTTTAATAAGAGGTGAGA
AGGAGGGGAAGGGAGGGAGGAAGGGCAGGGGTGGGAAGAGGAGGGGCTTC
CGCAGGGAAAGGCAGAAGGACTATCAGTGATTGTGTAGACCTTTGTCGGT
CATTTCTTGTATGCCGTCTTCAAAGGATAGGAAATAGGAAAGAGGGATCT
CGTGGAGTACACTGTGCGTAGCATTTTCTACAGCCGTCCCCCCTCAGTCC
TTCCTGCCCTCCCGCCTTACACTCTCTGACTCCCCCCTCCCCCACACACA
GAATAACGCAACGTTTTATGCCACAATGCCAGCCATGTTCTAGCATTCAA
AGTGCGGCCGTGCGGGCCAACAAGCAAGTACTGGTAAGTATGCAGGAAGA
CTCTGGGGGAGAAGGGATGGAAGGAGGGAGGGAAGCATGAGCGAGCTGCC
GCTGCTTGTCTGAAACTCATTCTCCTCTCCTTCTCCCTTTCTGCCAAATT
ACTCGAAATCGCACCATCACATTCTCTGCGTCCCACACAAATACACCCTG
TATCTCTCACACACGCACTCAAATGTGTGCTAGATCTACCACTGGTACCA
CGTGAGCTCCCTCCGCCGGTACCACGTCACGGGACTTGTCGCGGAGGGGG
CCCGTCTACTCGCAGGCGACGAATGGCTAGATAGTACCATGAAAGATGCG
GTGGAGGAGGCCAAGTGCTGGTGGCAGGGTGCGACTGAATTGAGGGACGA
CTTGCAGCGGCGGTGGAAGTAGG
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Coding sequence (CDS) from alignment at scaffold_15:520404..521976+

>mRNA_6389 ID=mRNA_6389|Name=jgi.p|Nanoce1779_2|594850|organism=Nannochloropsis oceanica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_15:520404..521976+ (Nannochloropsis oceanica)
ATGCCCCCCCGGCCTAGAGACGATCTACGCATCTCACAGGAAGACTGGTT
CAAGTTTTCCAAGCTTGCGGCGGGCGGCTTTACATTTGTCCTGGCCCTGT
CCGGCTTTCAATGTATGCAAGGCCTTGCTCGTATTTCGGCCGCCCATCCC
CTCGCAAGCGCCCTGGGCCTCATCTCGGTTGGCACAGGGTCTGTCATGGC
CTCTCTCGTCGCGGATCAAGCACCTTCCGCCCTCTGTAAGGCTATGGGTT
GGGCTCCGCCGACGCATTCGGCCCGTAAAATCACCTGCGGCAAGGATCTC
TTATCGCCCCAAAAATGTTCCTCATTGTGGCAAGACCCGGACCAAAAGGA
AGAAGAGCAGATACTGCGAGTTTTGCGGGCAGCCATGATGGGGATCGTGA
TATTCAAGGGCTTTGGGGGACGATTCTCTAGCGTGGCTCCTAGTGACGTC
GCCCGCCCGGGAGCCTTTTTCCGTATGAAAGGATCACTTCCTGCTACGTA
CGAATATGCCAGCCAGGTGCAGAAGCGAGCGCTGGATGGTTTTGGGGCGA
AGTTCGGGTGCCATTCTTGTGGACGGAAGGAAATGTTGCAGTATATTGGT
GATCACATGCCGCCCAAGAAGGTGGCGATGGCGATGAATCGGAAGTGGTG
GCGGTGGTTGTTTAATAAGAGAATAACGCAACGTTTTATGCCACAATGCC
AGCCATGTTCTAGCATTCAAAGTGCGGCCGTGCGGGCCAACAAGCAAGTA
CTGATCTACCACTGGTACCACGTGAGCTCCCTCCGCCGGTACCACGTCAC
GGGACTTGTCGCGGAGGGGGCCCGTCTACTCGCAGGCGACGAATGGCTAG
ATAGTACCATGAAAGATGCGGTGGAGGAGGCCAAGTGCTGGTGGCAGGGT
GCGACTGAATTGAGGGACGACTTGCAGCGGCGGTGGAAGTAGATGCCCCC
CCGGCCTAGAGACGATCTACGCATCTCACAGGAAGACTGGTTCAAGTTTT
CCAAGCTTGCGGCGGGCGGCTTTACATTTGTCCTGGCCCTGTCCGGCTTT
CAATGTATGCAAGGCCTTGCTCGTATTTCGGCCGCCCATCCCCTCGCAAG
CGCCCTGGGCCTCATCTCGGTTGGCACAGGGTCTGTCATGGCCTCTCTCG
TCGCGGATCAAGCACCTTCCGCCCTCTGTAAGGCTATGGGTTGGGCTCCG
CCGACGCATTCGGCCCGTAAAATCACCTGCGGCAAGGATCTCTTATCGCC
CCAAAAATGTTCCTCATTGTGGCAAGACCCGGACCAAAAGGAAGAAGAGC
AGATACTGCGAGTTTTGCGGGCAGCCATGATGGGGATCGTGATATTCAAG
GGCTTTGGGGGACGATTCTCTAGCGTGGCTCCTAGTGACGTCGCCCGCCC
GGGAGCCTTTTTCCGTATGAAAGGATCACTTCCTGCTACGTACGAATATG
CCAGCCAGGTGCAGAAGCGAGCGCTGGATGGTTTTGGGGCGAAGTTCGGG
TGCCATTCTTGTGGACGGAAGGAAATGTTGCAGTATATTGGTGATCACAT
GCCGCCCAAGAAGGTGGCGATGGCGATGAATCGGAAGTGGTGGCGGTGGT
TGTTTAATAAGAGAATAACGCAACGTTTTATGCCACAATGCCAGCCATGT
TCTAGCATTCAAAGTGCGGCCGTGCGGGCCAACAAGCAAGTACTGATCTA
CCACTGGTACCACGTGAGCTCCCTCCGCCGGTACCACGTCACGGGACTTG
TCGCGGAGGGGGCCCGTCTACTCGCAGGCGACGAATGGCTAGATAGTACC
ATGAAAGATGCGGTGGAGGAGGCCAAGTGCTGGTGGCAGGGTGCGACTGA
ATTGAGGGACGACTTGCAGCGGCGGTGGAAGTAGATGCCCCCCCGGCCTA
GAGACGATCTACGCATCTCACAGGAAGACTGGTTCAAGTTTTCCAAGCTT
GCGGCGGGCGGCTTTACATTTGTCCTGGCCCTGTCCGGCTTTCAATGTAT
GCAAGGCCTTGCTCGTATTTCGGCCGCCCATCCCCTCGCAAGCGCCCTGG
GCCTCATCTCGGTTGGCACAGGGTCTGTCATGGCCTCTCTCGTCGCGGAT
CAAGCACCTTCCGCCCTCTGTAAGGCTATGGGTTGGGCTCCGCCGACGCA
TTCGGCCCGTAAAATCACCTGCGGCAAGGATCTCTTATCGCCCCAAAAAT
GTTCCTCATTGTGGCAAGACCCGGACCAAAAGGAAGAAGAGCAGATACTG
CGAGTTTTGCGGGCAGCCATGATGGGGATCGTGATATTCAAGGGCTTTGG
GGGACGATTCTCTAGCGTGGCTCCTAGTGACGTCGCCCGCCCGGGAGCCT
TTTTCCGTATGAAAGGATCACTTCCTGCTACGTACGAATATGCCAGCCAG
GTGCAGAAGCGAGCGCTGGATGGTTTTGGGGCGAAGTTCGGGTGCCATTC
TTGTGGACGGAAGGAAATGTTGCAGTATATTGGTGATCACATGCCGCCCA
AGAAGGTGGCGATGGCGATGAATCGGAAGTGGTGGCGGTGGTTGTTTAAT
AAGAGAATAACGCAACGTTTTATGCCACAATGCCAGCCATGTTCTAGCAT
TCAAAGTGCGGCCGTGCGGGCCAACAAGCAAGTACTGATCTACCACTGGT
ACCACGTGAGCTCCCTCCGCCGGTACCACGTCACGGGACTTGTCGCGGAG
GGGGCCCGTCTACTCGCAGGCGACGAATGGCTAGATAGTACCATGAAAGA
TGCGGTGGAGGAGGCCAAGTGCTGGTGGCAGGGTGCGACTGAATTGAGGG
ACGACTTGCAGCGGCGGTGGAAGTAG
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Synonyms
Publications