jgi.p|Nanoce1779_2|594846, mRNA_6387 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594846
Unique Name	mRNA_6387
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2439
Alignment location	scaffold_15:514843..517432 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594932
Track	FilteredModels2
ProteinId	594846

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:514843..517432 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594846	gene_6387	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594846	mRNA_6387-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6387	CDS_6387	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:514843..517432+
coding sequence from alignment at scaffold_15:514843..517432+

mRNA sequence

>mRNA_6387 ID=mRNA_6387|Name=jgi.p|Nanoce1779_2|594846|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp
TGCGAGTTTAAGAAGTGTTTTTCCTCATTAACCTTGCCAAACACTTGTTC
CGGCAACGCACAGACCCAAGTCTCTGAATGAAATAGCAATAGAAAATTCC
TACGTATTATATGACAATTTCGTTCTGGTCATGCTTCAGGTCGTGCTCCA
CTAGAGATCGAAGAGACTTACGGGCTTCCCCACTGCAGTTTCGCGGCATC
GATCCACTGGAACCATGTGGAGATCCCGCGGCTTTATGGGCGAGGTGGAT
GGGGCAAATCAAGCGCTACTTTGGTATCGGGTCAGCACTGGTTCTCCTAC
ATCCCCTGCCGAGCCCTGACCGGCTAATTATGACTAACACTGTCTTTGTC
TGCGGTGGAAAGTGGGAGCGAAAGAGGCCCAGAGAGCGGGGACAAGAGTA
ACGCGTGTCTTCCTCAACTAAGCAGTGCCATGCCCCCTCACTCCTCCCCC
TCTCCCTGCGCCCACCCACACATTGAGGTCGCTCCCTGCATCGGACTATC
AGTCACGCATGAGGTGGAGGGGAAAACCCCCACCAATCTCAGTCCCACCA
TCATCATCGCCCGTCTCAGCCTCTCCCCCGTCGGTACTACTCCGGATCCT
CGCTGTGCTGATGATTATGACCACAAGCACGGTCGCAGCTACTACTATGC
GGCGGCAAGTTGCTGCCTTTACGCGAGTGCCGGCAAGCAGAAAGCACCAC
TTTTCGAATGGTTCACCAGCACCACCAACGTCCATCCTCCAGTCTCTATT
CTTCTGTCCTCCCCGTCGCGCCCTCTGCTCGGCTCCCTCCGGCGCCACCA
CTACCATTCCCCCCAAGCCAGCAGCAGCCATGAAACACTCAAGAGAATCC
TTACAAGACCTACAACGAATTGCTGACTTTTTCCCTGGTACCATCAAGGA
CAACAGTACCGCCTTTTTCCACGCGCCTCAGGCATATGCTACCGTCCCCG
AGGCTTTGACTGCCGCCCTGCACATCCCACTCGACCGCGCCGTGAAGCTC
CACGAGGTCGGTGCTGTATACATACACCGTCAAATGAAATTTAGACGCAC
ACGTTTCATCGAAAATTTCCCTCCAATTTCTGTGAAAGAAGGAGATTTGT
TTCGTGTGTATCTTTTCCCGCGGCGGTTCCCGGAATGTGTGACTGATTAC
AGCTCGCGGGTTGTGTGGGAGGATGAGGATGTGATGATTGTTGATAAGCC
GCCTGGGTGTCCTTGTTCTTTGCATGTATCAAATGCATTGGAGGCACTGG
ATGTAGTGGCGTCAGCGAGTTTGGGGGTGCCTCTAATAAGAATGAACCGG
CTCGACGTCGTCACGACCGGCCTGGTCCCGTTGGCCAAGACTGCTCAAGG
GGCCACCCGTTTTTGGGAGGAAATCAGACGAGACCGCGTGGGGAAGAAAT
ACAAAGCACTACTGACGGGTCCTGTACCTGTGGGTGTGTTGGAGCACTAC
ATGCCAGGTAAGTCATGTATTGTTTGTCTCGTATTGGTACCTCTCGAGAG
TTTGCCCACTCACCACGCACTCGCCTGCGATTTTTTATTTGCCCGTTTCC
CTCTTTCACCGCTATCTAAAGGGAAAATCATCCACCGCCGACCCGCGCCT
CGTGCCATAAGCCGGCAGCCACTCAAAGGGTGGAAGGTGTGTCAAACCCG
CGTCTTGTCCTGCACTCCCGTGTCATTCTCTGACTTGGATGTAGCTGCCC
TTCTTGACGCCCGTAAGGAGGAGGCAAAGACGGAAGAGAAAGAGGGAGGG
GCTCATGTTTCCGCCTCGGAGAACAAAATTCTGAGCATTCTCTCTTCCTT
CAAAACTTCCTCCACCGCTTCCTCTGCCTATACCTCCTTCGCTTCCTCTT
CCTCAGCTTCCTTCTCCTCCTCCACCTCCTCTGCCCTCTACGAAGTGGAA
GCCGAGCTAATGACAGGCCGCACTCACCAGCTCCGCGCTGTGTTCGCGGC
AGAGGGCAGTCCTATCTGGCAAGATACGATGTATTCCCCCCTAACGTCCT
TTCTGCTAAACGATGAGGACGACCCGGCGATCGAGTCTATATACCCTTTG
TGCGTGGAGCCCACGGCGACGACGGGCATCGCGTTGCAGTGCGCGGGATT
GACTTTTTGGGGGAAGACGATCGAGGCAGGACGTCCCTGGTGGAGAAAGA
AGGTAGCCAAATTGGAAGGGGTTATGGAGTAGGAGTGAAGGAGGGAGCGT
ATGCACATAAAGTAAGCACCGCATTGTATGGTAATGAAAACGCCTGTGTA
AGCACTCCAAGTGGCGCCAAATATCATTTGTGTTGTTCTTGCTTTCGGGT
CTTCAATCTCTAGTTACCAAGGAGCCTTTGAGTGCATTTTATATTCCATT
CGTCCATCCTGGCGGCTGCTTTTTATTTACTTCTTCGTTTTAAGTCCTTT
TCTCCGCCCCCTAGCATCCTCCCTCCCCAAACACCCTCC

protein sequence of jgi.p|Nanoce1779_2|594846

>mRNA_6387-protein ID=mRNA_6387-protein|Name=jgi.p|Nanoce1779_2|594846|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MRWRGKPPPISVPPSSSPVSASPPSVLLRILAVLMIMTTSTVAATTMRRQ
VAAFTRVPASRKHHFSNGSPAPPTSILQSLFFCPPRRALCSAPSGATTTI
PPKPAAAMKHSRESLQDLQRIADFFPGTIKDNSTAFFHAPQAYATVPEAL
TAALHIPLDRAVKLHEVGAVYIHRQMKFRRTRFIENFPPISVKEGDLFRV
YLFPRRFPECVTDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVV
ASASLGVPLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKA
LLTGPVPVGVLEHYMPGKSCIVCLVLVPLESLPTHHALACDFLFARFPLS
PLSKGKIIHRRPAPRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLD
ARKEEAKTEEKEGGAHVSASENKILSILSSFKTSSTASSAYTSFASSSSA
SFSSSTSSALYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLTSFLL
NDEDDPAIESIYPLCVEPTATTGIALQCAGLTFWGKTIEAGRPWWRKKVA
KLEGVME*

mRNA from alignment at scaffold_15:514843..517432+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6387 ID=mRNA_6387|Name=jgi.p|Nanoce1779_2|594846|organism=Nannochloropsis oceanica|type=mRNA|length=2590bp|location=Sequence derived from alignment at scaffold_15:514843..517432+ (Nannochloropsis oceanica)
TGCGAGTTTAAGAAGTGTTTTTCCTCATTAACCTTGCCAAACACTTGTTC
CGGCAACGCACAGACCCAAGTCTCTGAATGAAATAGCAATAGAAAATTCC
TACGTATTATATGACAATTTCGTTCTGGTCATGCTTCAGGTCGTGCTCCA
CTAGAGATCGAAGAGACTTACGGGCTTCCCCACTGCAGTTTCGCGGCATC
GATCCACTGGAACCATGTGGAGATCCCGCGGCTTTATGGGCGAGGTGGAT
GGGGCAAATCAAGCGCTACTTTGGTATCGGGTCAGCACTGGTTCTCCTAC
ATCCCCTGCCGAGCCCTGACCGGCTAATTATGACTAACACTGTCTTTGTC
TGCGGTGGAAAGTGGGAGCGAAAGAGGCCCAGAGAGCGGGGACAAGAGTA
ACGCGTGTCTTCCTCAACTAAGCAGTGCCATGCCCCCTCACTCCTCCCCC
TCTCCCTGCGCCCACCCACACATTGAGGTCGCTCCCTGCATCGGACTATC
AGTCACGCATGAGGTGGAGGGGAAAACCCCCACCAATCTCAGTCCCACCA
TCATCATCGCCCGTCTCAGCCTCTCCCCCGTCGGTACTACTCCGGATCCT
CGCTGTGCTGATGATTATGACCACAAGCACGGTCGCAGCTACTACTATGC
GGCGGCAAGTTGCTGCCTTTACGCGAGTGCCGGCAAGCAGAAAGCACCAC
TTTTCGAATGGTTCACCAGCACCACCAACGTCCATCCTCCAGTCTCTATT
CTTCTGTCCTCCCCGTCGCGCCCTCTGCTCGGCTCCCTCCGGCGCCACCA
CTACCATTCCCCCCAAGCCAGCAGCAGCCATGAAACACTCAAGAGAATCC
TTACAAGACCTACAACGAATTGCTGACTTTTTCCCTGGTACCATCAAGGA
CAACAGTACCGCCTTTTTCCACGCGCCTCAGGCATATGCTACCGTCCCCG
AGGCTTTGACTGCCGCCCTGCACATCCCACTCGACCGCGCCGTGAAGCTC
CACGAGGTCGGTGCTGTATACATACACCGTCAAATGAAATTTAGACGCAC
ACGTTTCATCGAAAATTTCCCTCCAATTTCTGTGAAAGAAGGAGATTTGT
TTCGTGTGTATCTTTTCCCGCGGCGGTTCCCGGAATGTGTGACTGATTAC
AGCTCGCGGGTTGTGTGGGAGGATGAGGATGTGATGATTGTTGATAAGCC
GCCTGGGTGTCCTTGTTCTTTGCATGTATCAAATGCATTGGAGGCACTGG
ATGTAGTGGCGTCAGCGAGTTTGGGGGTGCCTCTAATAAGGTAGGTAGTT
TGCCCAGGAGGAGTGCGATGGACGGGTAAACCAAAGGGCTTTCGTTTTTG
TTTTTGCTTTTTTTTAAATCTCCTCTTGTTTGTGTCCATCAAGGAGAATT
GCCCTTACTCAAGCGCTATCTTTCCACCCCATTCTGTATAGAATGAACCG
GCTCGACGTCGTCACGACCGGCCTGGTCCCGTTGGCCAAGACTGCTCAAG
GGGCCACCCGTTTTTGGGAGGAAATCAGACGAGACCGCGTGGGGAAGAAA
TACAAAGCACTACTGACGGGTCCTGTACCTGTGGGTGTGTTGGAGCACTA
CATGCCAGGTAAGTCATGTATTGTTTGTCTCGTATTGGTACCTCTCGAGA
GTTTGCCCACTCACCACGCACTCGCCTGCGATTTTTTATTTGCCCGTTTC
CCTCTTTCACCGCTATCTAAAGGGAAAATCATCCACCGCCGACCCGCGCC
TCGTGCCATAAGCCGGCAGCCACTCAAAGGGTGGAAGGTGTGTCAAACCC
GCGTCTTGTCCTGCACTCCCGTGTCATTCTCTGACTTGGATGTAGCTGCC
CTTCTTGACGCCCGTAAGGAGGAGGCAAAGACGGAAGAGAAAGAGGGAGG
GGCTCATGTTTCCGCCTCGGAGAACAAAATTCTGAGCATTCTCTCTTCCT
TCAAAACTTCCTCCACCGCTTCCTCTGCCTATACCTCCTTCGCTTCCTCT
TCCTCAGCTTCCTTCTCCTCCTCCACCTCCTCTGCCCTCTACGAAGTGGA
AGCCGAGCTAATGACAGGCCGCACTCACCAGCTCCGCGCTGTGTTCGCGG
CAGAGGGCAGTCCTATCTGGCAAGATACGATGTATTCCCCCCTAACGTCC
TTTCTGCTAAACGATGAGGACGACCCGGCGATCGAGTCTATATACCCTTT
GTGCGTGGAGCCCACGGCGACGACGGGCATCGCGTTGCAGTGCGCGGGAT
TGACTTTTTGGGGGAAGACGATCGAGGCAGGACGTCCCTGGTGGAGAAAG
AAGGTAGCCAAATTGGAAGGGGTTATGGAGTAGGAGTGAAGGAGGGAGCG
TATGCACATAAAGTAAGCACCGCATTGTATGGTAATGAAAACGCCTGTGT
AAGCACTCCAAGTGGCGCCAAATATCATTTGTGTTGTTCTTGCTTTCGGG
TCTTCAATCTCTAGTTACCAAGGAGCCTTTGAGTGCATTTTATATTCCAT
TCGTCCATCCTGGCGGCTGCTTTTTATTTACTTCTTCGTTTTAAGTCCTT
TTCTCCGCCCCCTAGCATCCTCCCTCCCCAAACACCCTCC

Coding sequence (CDS) from alignment at scaffold_15:514843..517432+

>mRNA_6387 ID=mRNA_6387|Name=jgi.p|Nanoce1779_2|594846|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_15:514843..517432+ (Nannochloropsis oceanica)
ATGAGGTGGAGGGGAAAACCCCCACCAATCTCAGTCCCACCATCATCATC
GCCCGTCTCAGCCTCTCCCCCGTCGGTACTACTCCGGATCCTCGCTGTGC
TGATGATTATGACCACAAGCACGGTCGCAGCTACTACTATGCGGCGGCAA
GTTGCTGCCTTTACGCGAGTGCCGGCAAGCAGAAAGCACCACTTTTCGAA
TGGTTCACCAGCACCACCAACGTCCATCCTCCAGTCTCTATTCTTCTGTC
CTCCCCGTCGCGCCCTCTGCTCGGCTCCCTCCGGCGCCACCACTACCATT
CCCCCCAAGCCAGCAGCAGCCATGAAACACTCAAGAGAATCCTTACAAGA
CCTACAACGAATTGCTGACTTTTTCCCTGGTACCATCAAGGACAACAGTA
CCGCCTTTTTCCACGCGCCTCAGGCATATGCTACCGTCCCCGAGGCTTTG
ACTGCCGCCCTGCACATCCCACTCGACCGCGCCGTGAAGCTCCACGAGGT
CGGTGCTGTATACATACACCGTCAAATGAAATTTAGACGCACACGTTTCA
TCGAAAATTTCCCTCCAATTTCTGTGAAAGAAGGAGATTTGTTTCGTGTG
TATCTTTTCCCGCGGCGGTTCCCGGAATGTGTGACTGATTACAGCTCGCG
GGTTGTGTGGGAGGATGAGGATGTGATGATTGTTGATAAGCCGCCTGGGT
GTCCTTGTTCTTTGCATGTATCAAATGCATTGGAGGCACTGGATGTAGTG
GCGTCAGCGAGTTTGGGGGTGCCTCTAATAAGAATGAACCGGCTCGACGT
CGTCACGACCGGCCTGGTCCCGTTGGCCAAGACTGCTCAAGGGGCCACCC
GTTTTTGGGAGGAAATCAGACGAGACCGCGTGGGGAAGAAATACAAAGCA
CTACTGACGGGTCCTGTACCTGTGGGTGTGTTGGAGCACTACATGCCAGG
TAAGTCATGTATTGTTTGTCTCGTATTGGTACCTCTCGAGAGTTTGCCCA
CTCACCACGCACTCGCCTGCGATTTTTTATTTGCCCGTTTCCCTCTTTCA
CCGCTATCTAAAGGGAAAATCATCCACCGCCGACCCGCGCCTCGTGCCAT
AAGCCGGCAGCCACTCAAAGGGTGGAAGGTGTGTCAAACCCGCGTCTTGT
CCTGCACTCCCGTGTCATTCTCTGACTTGGATGTAGCTGCCCTTCTTGAC
GCCCGTAAGGAGGAGGCAAAGACGGAAGAGAAAGAGGGAGGGGCTCATGT
TTCCGCCTCGGAGAACAAAATTCTGAGCATTCTCTCTTCCTTCAAAACTT
CCTCCACCGCTTCCTCTGCCTATACCTCCTTCGCTTCCTCTTCCTCAGCT
TCCTTCTCCTCCTCCACCTCCTCTGCCCTCTACGAAGTGGAAGCCGAGCT
AATGACAGGCCGCACTCACCAGCTCCGCGCTGTGTTCGCGGCAGAGGGCA
GTCCTATCTGGCAAGATACGATGTATTCCCCCCTAACGTCCTTTCTGCTA
AACGATGAGGACGACCCGGCGATCGAGTCTATATACCCTTTGTGCGTGGA
GCCCACGGCGACGACGGGCATCGCGTTGCAGTGCGCGGGATTGACTTTTT
GGGGGAAGACGATCGAGGCAGGACGTCCCTGGTGGAGAAAGAAGGTAGCC
AAATTGGAAGGGGTTATGGAGTAGATGAGGTGGAGGGGAAAACCCCCACC
AATCTCAGTCCCACCATCATCATCGCCCGTCTCAGCCTCTCCCCCGTCGG
TACTACTCCGGATCCTCGCTGTGCTGATGATTATGACCACAAGCACGGTC
GCAGCTACTACTATGCGGCGGCAAGTTGCTGCCTTTACGCGAGTGCCGGC
AAGCAGAAAGCACCACTTTTCGAATGGTTCACCAGCACCACCAACGTCCA
TCCTCCAGTCTCTATTCTTCTGTCCTCCCCGTCGCGCCCTCTGCTCGGCT
CCCTCCGGCGCCACCACTACCATTCCCCCCAAGCCAGCAGCAGCCATGAA
ACACTCAAGAGAATCCTTACAAGACCTACAACGAATTGCTGACTTTTTCC
CTGGTACCATCAAGGACAACAGTACCGCCTTTTTCCACGCGCCTCAGGCA
TATGCTACCGTCCCCGAGGCTTTGACTGCCGCCCTGCACATCCCACTCGA
CCGCGCCGTGAAGCTCCACGAGGTCGGTGCTGTATACATACACCGTCAAA
TGAAATTTAGACGCACACGTTTCATCGAAAATTTCCCTCCAATTTCTGTG
AAAGAAGGAGATTTGTTTCGTGTGTATCTTTTCCCGCGGCGGTTCCCGGA
ATGTGTGACTGATTACAGCTCGCGGGTTGTGTGGGAGGATGAGGATGTGA
TGATTGTTGATAAGCCGCCTGGGTGTCCTTGTTCTTTGCATGTATCAAAT
GCATTGGAGGCACTGGATGTAGTGGCGTCAGCGAGTTTGGGGGTGCCTCT
AATAAGAATGAACCGGCTCGACGTCGTCACGACCGGCCTGGTCCCGTTGG
CCAAGACTGCTCAAGGGGCCACCCGTTTTTGGGAGGAAATCAGACGAGAC
CGCGTGGGGAAGAAATACAAAGCACTACTGACGGGTCCTGTACCTGTGGG
TGTGTTGGAGCACTACATGCCAGGTAAGTCATGTATTGTTTGTCTCGTAT
TGGTACCTCTCGAGAGTTTGCCCACTCACCACGCACTCGCCTGCGATTTT
TTATTTGCCCGTTTCCCTCTTTCACCGCTATCTAAAGGGAAAATCATCCA
CCGCCGACCCGCGCCTCGTGCCATAAGCCGGCAGCCACTCAAAGGGTGGA
AGGTGTGTCAAACCCGCGTCTTGTCCTGCACTCCCGTGTCATTCTCTGAC
TTGGATGTAGCTGCCCTTCTTGACGCCCGTAAGGAGGAGGCAAAGACGGA
AGAGAAAGAGGGAGGGGCTCATGTTTCCGCCTCGGAGAACAAAATTCTGA
GCATTCTCTCTTCCTTCAAAACTTCCTCCACCGCTTCCTCTGCCTATACC
TCCTTCGCTTCCTCTTCCTCAGCTTCCTTCTCCTCCTCCACCTCCTCTGC
CCTCTACGAAGTGGAAGCCGAGCTAATGACAGGCCGCACTCACCAGCTCC
GCGCTGTGTTCGCGGCAGAGGGCAGTCCTATCTGGCAAGATACGATGTAT
TCCCCCCTAACGTCCTTTCTGCTAAACGATGAGGACGACCCGGCGATCGA
GTCTATATACCCTTTGTGCGTGGAGCCCACGGCGACGACGGGCATCGCGT
TGCAGTGCGCGGGATTGACTTTTTGGGGGAAGACGATCGAGGCAGGACGT
CCCTGGTGGAGAAAGAAGGTAGCCAAATTGGAAGGGGTTATGGAGTAG

Synonyms

Publications