jgi.p|Nanoce1779_2|594843, mRNA_6386 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594843
Unique Name	mRNA_6386
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1486
Alignment location	scaffold_15:513177..514842 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594929
Track	FilteredModels2
ProteinId	594843

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:513177..514842 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594843	gene_6386	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594843	mRNA_6386-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6386	CDS_6386	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:513177..514842+
coding sequence from alignment at scaffold_15:513177..514842+

mRNA sequence

>mRNA_6386 ID=mRNA_6386|Name=jgi.p|Nanoce1779_2|594843|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
CAGAACACAGGCCGTCGCATCGTCCTACAAGCTTTCTTCTACCAACCTTC
TTACAGCAACAACCAACTTGCCTCAAGCACCATGAAGATTTTGTACTCCA
TGGCAGCCCTGCTGCTCGCTGCTGCCCCGGCAAGGGCCGGCCTAAGCCTC
TCGGTAATCAAACTTCCACAGATTAAATGCTCCCTCGCGGTGACGGCCAC
CGACACCACCGTCAAGGACCTCTCCTCCCTCAATCTGGAAGGGGCGGTAG
AGACCTTCCTGGCCGACGATGTCATAGTGGGGGGCACCTACAACTACGCC
GCCGCCGTGGCAAAGCCCGAGGAGATCTACATCAAGAAGTCATTCGACGT
CAAGATGGGGGATTTGGCCTTGCATGCTCGCTACCGTTTGCCGGATCAGG
TGGCGGCCTTGACGGCGACCTTGAAGCGGAATGCGGATTATATCCGCGCG
GCGTTCAACACAGACTCGGTGGTAGAGCGGGTGGAGGCGTCCAAGAGCTT
CACCCTTGCGGGAGACCGTAAACTGTCGTTGACCCCTGCGTGGAACCAGG
ATACCAAGGCCTTTGAGCTGACCGTGGCGCAGGACATTCAGGCTGGAAAG
ACTAATGCAGTGCTGGAGCTGAGCCAGGCTGACAATGATGGGAAACTCAC
CTTCAACCACCAGGTCGATGACGCCAACACCATCTCCCCCACCCTTAGCC
TCAAGCGTGGCTACCTCACCTACCAGTGGACGCACCTGTTAGGGGACGGC
GCCAAGCTGCAGACGACGTTGGACCCGTTCACTGACTTGGATGTGACTTG
GTCTGACCCGGGCAAGGGCGGTGAGTGGGTGACTCGCGCCAACATCCCCC
TCAAAGAGCCCAAGACCGCGACCCTCTCCTTTAAGCGCAAGTTTACCTTC
CAGTAACATCTTGTACCTTTTACGAGATAGCGAGAGGAGGAAGAAAAGGA
AAAGGGAGAGGCAGGGCCTGCATAGGCACTGCATGTATGTGTTTGGGCCA
TGTTTTCATCTCTTCTTAACTTCCTCCCCCGGGCCCAAACCTCTTCAGCT
TTGTCTGTAGTACGCACATTTGTATGTGTCTCGGCATAGTTTTAGATTTA
TAAGTAAGTAGTGGTGCTTTGTTGAAGTGTACGAGAACAGGAAAGGCAAA
CGCATGGTCTTCGAAACAGATAGAGAGAGAAGTGATAAAAGTGATTGGCG
TAGCCCGGACGTGTGTTTAGAGGCACCTTTGCTCCTTCAAGAAGGGGAGG
CGAAGCTTTTAAATGCCGCCATCAGCCAGCCCATACACAAGAGAATAAAG
AAGGGGAGAAGTGGGGTATATCAGTTCTTCACAAATAAAAAGAAACAGAC
CCCAACCGCAGCAACATAAACCAAACCCCGAAACAAAGAGACGAACATGA
AGAGCAAACGAAATTTAACGCGCGAATCAAAAACAAACCAAAGAGACAGA
CACAAAGAACAAAGCGATTATGTGAGGAGGATTATA

protein sequence of jgi.p|Nanoce1779_2|594843

>mRNA_6386-protein ID=mRNA_6386-protein|Name=jgi.p|Nanoce1779_2|594843|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MKILYSMAALLLAAAPARAGLSLSVIKLPQIKCSLAVTATDTTVKDLSSL
NLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGDLALHAR
YRLPDQVAALTATLKRNADYIRAAFNTDSVVERVEASKSFTLAGDRKLSL
TPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGKLTFNHQVDDANT
ISPTLSLKRGYLTYQWTHLLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWV
TRANIPLKEPKTATLSFKRKFTFQ*

mRNA from alignment at scaffold_15:513177..514842+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6386 ID=mRNA_6386|Name=jgi.p|Nanoce1779_2|594843|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp|location=Sequence derived from alignment at scaffold_15:513177..514842+ (Nannochloropsis oceanica)
CAGAACACAGGCCGTCGCATCGTCCTACAAGCTTTCTTCTACCAACCTTC
TTACAGCAACAACCAACTTGCCTCAAGCACCATGAAGATTTTGTACTCCA
TGGCAGCCCTGCTGCTCGCTGCTGCCCCGGCAAGGGCCGGCCTAAGCCTC
TCGGTAATCAAACTTCCACAGATTAAATGCTCCCTCGCGGTGAGCGCTAC
CCCGCAGTGTGTTTGCATTTCTGATCAGTGTATCTCCTTTCTCAACTCTC
TTCTCCCCAATCGCTTCCCCTCTTCTTATTTCTTTTCCCTCCGCCGCCTC
CTCCTCCTCATCCTATGCTTACCCCTCACCCCCTCCACCCCCTCCCTTCT
TTCCTCATATTCTATCCAGGTGACGGCCACCGACACCACCGTCAAGGACC
TCTCCTCCCTCAATCTGGAAGGGGCGGTAGAGACCTTCCTGGCCGACGAT
GTCATAGTGGGGGGCACCTACAACTACGCCGCCGCCGTGGCAAAGCCCGA
GGAGATCTACATCAAGAAGTCATTCGACGTCAAGATGGGGGATTTGGCCT
TGCATGCTCGCTACCGTTTGCCGGATCAGGTGGCGGCCTTGACGGCGACC
TTGAAGCGGAATGCGGATTATATCCGCGCGGCGTTCAACACAGACTCGGT
GGTAGAGCGGGTGGAGGCGTCCAAGAGCTTCACCCTTGCGGGAGACCGTA
AACTGTCGTTGACCCCTGCGTGGAACCAGGATACCAAGGCCTTTGAGCTG
ACCGTGGCGCAGGACATTCAGGCTGGAAAGACTAATGCAGTGCTGGAGCT
GAGCCAGGCTGACAATGATGGGAAACTCACCTTCAACCACCAGGTCGATG
ACGCCAACACCATCTCCCCCACCCTTAGCCTCAAGCGTGGCTACCTCACC
TACCAGTGGACGCACCTGTTAGGGGACGGCGCCAAGCTGCAGACGACGTT
GGACCCGTTCACTGACTTGGATGTGACTTGGTCTGACCCGGGCAAGGGCG
GTGAGTGGGTGACTCGCGCCAACATCCCCCTCAAAGAGCCCAAGACCGCG
ACCCTCTCCTTTAAGCGCAAGTTTACCTTCCAGTAACATCTTGTACCTTT
TACGAGATAGCGAGAGGAGGAAGAAAAGGAAAAGGGAGAGGCAGGGCCTG
CATAGGCACTGCATGTATGTGTTTGGGCCATGTTTTCATCTCTTCTTAAC
TTCCTCCCCCGGGCCCAAACCTCTTCAGCTTTGTCTGTAGTACGCACATT
TGTATGTGTCTCGGCATAGTTTTAGATTTATAAGTAAGTAGTGGTGCTTT
GTTGAAGTGTACGAGAACAGGAAAGGCAAACGCATGGTCTTCGAAACAGA
TAGAGAGAGAAGTGATAAAAGTGATTGGCGTAGCCCGGACGTGTGTTTAG
AGGCACCTTTGCTCCTTCAAGAAGGGGAGGCGAAGCTTTTAAATGCCGCC
ATCAGCCAGCCCATACACAAGAGAATAAAGAAGGGGAGAAGTGGGGTATA
TCAGTTCTTCACAAATAAAAAGAAACAGACCCCAACCGCAGCAACATAAA
CCAAACCCCGAAACAAAGAGACGAACATGAAGAGCAAACGAAATTTAACG
CGCGAATCAAAAACAAACCAAAGAGACAGACACAAAGAACAAAGCGATTA
TGTGAGGAGGATTATA

Coding sequence (CDS) from alignment at scaffold_15:513177..514842+

>mRNA_6386 ID=mRNA_6386|Name=jgi.p|Nanoce1779_2|594843|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_15:513177..514842+ (Nannochloropsis oceanica)
ATGAAGATTTTGTACTCCATGGCAGCCCTGCTGCTCGCTGCTGCCCCGGC
AAGGGCCGGCCTAAGCCTCTCGGTAATCAAACTTCCACAGATTAAATGCT
CCCTCGCGGTGACGGCCACCGACACCACCGTCAAGGACCTCTCCTCCCTC
AATCTGGAAGGGGCGGTAGAGACCTTCCTGGCCGACGATGTCATAGTGGG
GGGCACCTACAACTACGCCGCCGCCGTGGCAAAGCCCGAGGAGATCTACA
TCAAGAAGTCATTCGACGTCAAGATGGGGGATTTGGCCTTGCATGCTCGC
TACCGTTTGCCGGATCAGGTGGCGGCCTTGACGGCGACCTTGAAGCGGAA
TGCGGATTATATCCGCGCGGCGTTCAACACAGACTCGGTGGTAGAGCGGG
TGGAGGCGTCCAAGAGCTTCACCCTTGCGGGAGACCGTAAACTGTCGTTG
ACCCCTGCGTGGAACCAGGATACCAAGGCCTTTGAGCTGACCGTGGCGCA
GGACATTCAGGCTGGAAAGACTAATGCAGTGCTGGAGCTGAGCCAGGCTG
ACAATGATGGGAAACTCACCTTCAACCACCAGGTCGATGACGCCAACACC
ATCTCCCCCACCCTTAGCCTCAAGCGTGGCTACCTCACCTACCAGTGGAC
GCACCTGTTAGGGGACGGCGCCAAGCTGCAGACGACGTTGGACCCGTTCA
CTGACTTGGATGTGACTTGGTCTGACCCGGGCAAGGGCGGTGAGTGGGTG
ACTCGCGCCAACATCCCCCTCAAAGAGCCCAAGACCGCGACCCTCTCCTT
TAAGCGCAAGTTTACCTTCCAGTAAATGAAGATTTTGTACTCCATGGCAG
CCCTGCTGCTCGCTGCTGCCCCGGCAAGGGCCGGCCTAAGCCTCTCGGTA
ATCAAACTTCCACAGATTAAATGCTCCCTCGCGGTGACGGCCACCGACAC
CACCGTCAAGGACCTCTCCTCCCTCAATCTGGAAGGGGCGGTAGAGACCT
TCCTGGCCGACGATGTCATAGTGGGGGGCACCTACAACTACGCCGCCGCC
GTGGCAAAGCCCGAGGAGATCTACATCAAGAAGTCATTCGACGTCAAGAT
GGGGGATTTGGCCTTGCATGCTCGCTACCGTTTGCCGGATCAGGTGGCGG
CCTTGACGGCGACCTTGAAGCGGAATGCGGATTATATCCGCGCGGCGTTC
AACACAGACTCGGTGGTAGAGCGGGTGGAGGCGTCCAAGAGCTTCACCCT
TGCGGGAGACCGTAAACTGTCGTTGACCCCTGCGTGGAACCAGGATACCA
AGGCCTTTGAGCTGACCGTGGCGCAGGACATTCAGGCTGGAAAGACTAAT
GCAGTGCTGGAGCTGAGCCAGGCTGACAATGATGGGAAACTCACCTTCAA
CCACCAGGTCGATGACGCCAACACCATCTCCCCCACCCTTAGCCTCAAGC
GTGGCTACCTCACCTACCAGTGGACGCACCTGTTAGGGGACGGCGCCAAG
CTGCAGACGACGTTGGACCCGTTCACTGACTTGGATGTGACTTGGTCTGA
CCCGGGCAAGGGCGGTGAGTGGGTGACTCGCGCCAACATCCCCCTCAAAG
AGCCCAAGACCGCGACCCTCTCCTTTAAGCGCAAGTTTACCTTCCAGTAA

Synonyms

Publications