jgi.p|Nanoce1779_2|594837, mRNA_6385 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594837
Unique Name	mRNA_6385
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1446
Alignment location	scaffold_15:508781..510569 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594923
Track	FilteredModels2
ProteinId	594837

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:508781..510569 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594837	gene_6385	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594837	mRNA_6385-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6385	CDS_6385	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:508781..510569+
coding sequence from alignment at scaffold_15:508781..510569+

mRNA sequence

>mRNA_6385 ID=mRNA_6385|Name=jgi.p|Nanoce1779_2|594837|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
CGAGGGGGTAGAGGTCGGGTGGGTTGTGCTGAGGGCGACGGGGAGCGTGG
CGAAGGCGATGGCGGCTGCTGTCGATTATAGTGAGCGGGCAGCGTGGAGA
GAAGAGGAGGAGACGACGTTTTTGGAGGGGATGAATGAGTACGACAAGAA
CTTTAAGAAGATTCAGGCCCTCCTCCCAGGTCGAACCCTCAAAGAGGTCA
TCGCGTATTTCTACCTCTGGAAGCAAGGCCACAGCTACCGGGAGTGGAAA
GCCAACCGACCTCTGCAGTACGTGGAGCAGGCCATCCCCGACTACCATGC
CGACGTCTGCGATATGTGCGAGCGCCCGGGGGACCTGCTCTGCTGCGACA
CGTGCAACCTTGCCTTCCACATGCAGTGCCTGGGCCTGGACGACCAGGAC
GACGTGCCGGAGGACTTCAGGTACGTCCCCCTCCTCCTGCCTACCCTCCT
TCCCTCCTGCGCCGTGCTAGCAGGCTGCAACTCGACCAAGCGCTTTCTGA
TGTCAAGTGCTTGGTCTTGGGTTTTATGGGCCGGGAGACGGTGTGCCGGA
GGACCTGAGGGAGGTTCGCAGGGAGGGAGGGAAAGTAGGCGGTAATGATG
CGCAGGGTAGACAGTCAATCGATCGAGCATTCAATTGTGACATCATCCTT
ACTTCCTCTATCCCCCACCTACCCTTAGCTGCTCCCAATGCCTCGAGCAA
TATAGCACCGATCAAGAGCGGGAGCGAGCGAAGCGATGGGTGGAGACCCA
GGTGAAGAAGGTCCAAGTGCTGCGGGAGAAGGAGCTGCAGAAGCTCGAGG
GGGCTCCCGCGGGTTATATCGGGCGGAGACGGACGAAAGGTACGTGGGGA
GGGGGAGGGAGACAGGGAGAGAGGGCGAGAAGATTCGCACGCGTTCAGGT
AGCGAGTGAACTACGTCCCCGACAGGACGATCAGGTGGGTTTGGACCTGA
TGGGGTTGAATCAGATGGGTCTGAAATATGATCACGCCTTCCAGCCAGGT
GCGTCAGACGAAGCAGCTGCGGGCCAGCACCTGAGCCTGAGCCTGAGCGA
TGGGAGCGACCGATGATGGGGGCGAGAATGGCCCGTTTGTGGCTACCTCC
AGTTTGTTGCAGAAATGCAGTCGATCCGATCATTTGTTGTGGCCCATCTG
GCGACTGGATGGCGACCAAGCGAAAGTATTAAGCCTATCTTGTGCTGGCC
TTCTGGAAATGAAGGCGATGAGTCTCAAGCCACAGTACAAAAAATTTTCA
CTTACACAGGTTACCCCCTTCCTCTGCCCACCTCCCTTCCTCCTTTCTCC
CCACACTCATTCACAGCCAGCCAATCCAAACGAGGCCAGAAGCGAAAGCG
CGAAGATTGTAATTCCCACTCCTCCTCTCCCTCCGCTACCAGTACTGGCA
ACAGCCCCAGCAATGGGCCCACTAATGGCAGCAGCAGCAGCAGCAG

protein sequence of jgi.p|Nanoce1779_2|594837

>mRNA_6385-protein ID=mRNA_6385-protein|Name=jgi.p|Nanoce1779_2|594837|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MAAAVDYSERAAWREEEETTFLEGMNEYDKNFKKIQALLPGRTLKEVIAY
FYLWKQGHSYREWKANRPLQYVEQAIPDYHADVCDMCERPGDLLCCDTCN
LAFHMQCLGLDDQDDVPEDFRYVPLLLPTLLPSCAVLAGCNSTKRFLMSS
AWSWVLWAGRRCAGGPEGGSQGGRESRR*

mRNA from alignment at scaffold_15:508781..510569+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6385 ID=mRNA_6385|Name=jgi.p|Nanoce1779_2|594837|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp|location=Sequence derived from alignment at scaffold_15:508781..510569+ (Nannochloropsis oceanica)
CGAGGGGGTAGAGGTCGGGTGGGTTGTGCTGAGGGCGACGGGGAGCGTGG
CGAAGGCGATGGCGGCTGCTGTCGATTATAGTGAGCGGGCAGCGTGGAGA
GAAGAGGAGGAGACGACGTTTTTGGAGGGGATGAATGAGTACGACAAGAA
CTTTAAGAAGATTCAGGTAAGCCCCTCCCTCCATCCCCTCCCTCCCTTCC
CCGAACACACAAAGGGACCACCGGAAGCAAAGCGGCAGCTACAGGATGGA
CTGACACTCCCTCCCTCTCCCCCTGCCCTTCCTGCCTCCTTCCCTCCTTA
AGGCCCTCCTCCCAGGTCGAACCCTCAAAGAGGTCATCGCGTATTTCTAC
CTCTGGAAGCAAGGCCACAGCTACCGGGAGTGGAAAGCCAACCGACCTCT
GCAGTACGTGGAGCAGGCCATCCCCGACTACCATGCCGACGTCTGCGATG
TAGGCCCCCATTCCCCCCCCTTCCCTCTCCCCTCCCTCCCTTCATTCCCC
AATCATTCGCCGCGTCCTTGATGTTCCTTTCTTTTTTTCTATTGCTCCTG
GCTGCTTCTTGGTAACAACGGAAAATGGGAAAGGCAGGACAGTTGAAGGG
TGCGACACATCTCATTCCCTTCCTTACCCCTTCCCTCCCCGCCCTCCATC
CTTTAGATGTGCGAGCGCCCGGGGGACCTGCTCTGCTGCGACACGTGCAA
CCTTGCCTTCCACATGCAGTGCCTGGGCCTGGACGACCAGGACGACGTGC
CGGAGGACTTCAGGTACGTCCCCCTCCTCCTGCCTACCCTCCTTCCCTCC
TGCGCCGTGCTAGCAGGCTGCAACTCGACCAAGCGCTTTCTGATGTCAAG
TGCTTGGTCTTGGGTTTTATGGGCCGGGAGACGGTGTGCCGGAGGACCTG
AGGGAGGTTCGCAGGGAGGGAGGGAAAGTAGGCGGTAATGATGCGCAGGG
TAGACAGTCAATCGATCGAGCATTCAATTGTGACATCATCCTTACTTCCT
CTATCCCCCACCTACCCTTAGCTGCTCCCAATGCCTCGAGCAATATAGCA
CCGATCAAGAGCGGGAGCGAGCGAAGCGATGGGTGGAGACCCAGGTGAAG
AAGGTCCAAGTGCTGCGGGAGAAGGAGCTGCAGAAGCTCGAGGGGGCTCC
CGCGGGTTATATCGGGCGGAGACGGACGAAAGGTACGTGGGGAGGGGGAG
GGAGACAGGGAGAGAGGGCGAGAAGATTCGCACGCGTTCAGGTAGCGAGT
GAACTACGTCCCCGACAGGACGATCAGGTGGGTTTGGACCTGATGGGGTT
GAATCAGATGGGTCTGAAATATGATCACGCCTTCCAGCCAGGTGCGTCAG
ACGAAGCAGCTGCGGGCCAGCACCTGAGCCTGAGCCTGAGCGATGGGAGC
GACCGATGATGGGGGCGAGAATGGCCCGTTTGTGGCTACCTCCAGTTTGT
TGCAGAAATGCAGTCGATCCGATCATTTGTTGTGGCCCATCTGGCGACTG
GATGGCGACCAAGCGAAAGTATTAAGCCTATCTTGTGCTGGCCTTCTGGA
AATGAAGGCGATGAGTCTCAAGCCACAGTACAAAAAATTTTCACTTACAC
AGGTTACCCCCTTCCTCTGCCCACCTCCCTTCCTCCTTTCTCCCCACACT
CATTCACAGCCAGCCAATCCAAACGAGGCCAGAAGCGAAAGCGCGAAGAT
TGTAATTCCCACTCCTCCTCTCCCTCCGCTACCAGTACTGGCAACAGCCC
CAGCAATGGGCCCACTAATGGCAGCAGCAGCAGCAGCAG

Coding sequence (CDS) from alignment at scaffold_15:508781..510569+

>mRNA_6385 ID=mRNA_6385|Name=jgi.p|Nanoce1779_2|594837|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_15:508781..510569+ (Nannochloropsis oceanica)
ATGGCGGCTGCTGTCGATTATAGTGAGCGGGCAGCGTGGAGAGAAGAGGA
GGAGACGACGTTTTTGGAGGGGATGAATGAGTACGACAAGAACTTTAAGA
AGATTCAGGCCCTCCTCCCAGGTCGAACCCTCAAAGAGGTCATCGCGTAT
TTCTACCTCTGGAAGCAAGGCCACAGCTACCGGGAGTGGAAAGCCAACCG
ACCTCTGCAGTACGTGGAGCAGGCCATCCCCGACTACCATGCCGACGTCT
GCGATATGTGCGAGCGCCCGGGGGACCTGCTCTGCTGCGACACGTGCAAC
CTTGCCTTCCACATGCAGTGCCTGGGCCTGGACGACCAGGACGACGTGCC
GGAGGACTTCAGGTACGTCCCCCTCCTCCTGCCTACCCTCCTTCCCTCCT
GCGCCGTGCTAGCAGGCTGCAACTCGACCAAGCGCTTTCTGATGTCAAGT
GCTTGGTCTTGGGTTTTATGGGCCGGGAGACGGTGTGCCGGAGGACCTGA
GGGAGGTTCGCAGGGAGGGAGGGAAAGTAGGCGGTAAATGGCGGCTGCTG
TCGATTATAGTGAGCGGGCAGCGTGGAGAGAAGAGGAGGAGACGACGTTT
TTGGAGGGGATGAATGAGTACGACAAGAACTTTAAGAAGATTCAGGCCCT
CCTCCCAGGTCGAACCCTCAAAGAGGTCATCGCGTATTTCTACCTCTGGA
AGCAAGGCCACAGCTACCGGGAGTGGAAAGCCAACCGACCTCTGCAGTAC
GTGGAGCAGGCCATCCCCGACTACCATGCCGACGTCTGCGATATGTGCGA
GCGCCCGGGGGACCTGCTCTGCTGCGACACGTGCAACCTTGCCTTCCACA
TGCAGTGCCTGGGCCTGGACGACCAGGACGACGTGCCGGAGGACTTCAGG
TACGTCCCCCTCCTCCTGCCTACCCTCCTTCCCTCCTGCGCCGTGCTAGC
AGGCTGCAACTCGACCAAGCGCTTTCTGATGTCAAGTGCTTGGTCTTGGG
TTTTATGGGCCGGGAGACGGTGTGCCGGAGGACCTGAGGGAGGTTCGCAG
GGAGGGAGGGAAAGTAGGCGGTAAATGGCGGCTGCTGTCGATTATAGTGA
GCGGGCAGCGTGGAGAGAAGAGGAGGAGACGACGTTTTTGGAGGGGATGA
ATGAGTACGACAAGAACTTTAAGAAGATTCAGGCCCTCCTCCCAGGTCGA
ACCCTCAAAGAGGTCATCGCGTATTTCTACCTCTGGAAGCAAGGCCACAG
CTACCGGGAGTGGAAAGCCAACCGACCTCTGCAGTACGTGGAGCAGGCCA
TCCCCGACTACCATGCCGACGTCTGCGATATGTGCGAGCGCCCGGGGGAC
CTGCTCTGCTGCGACACGTGCAACCTTGCCTTCCACATGCAGTGCCTGGG
CCTGGACGACCAGGACGACGTGCCGGAGGACTTCAGGTACGTCCCCCTCC
TCCTGCCTACCCTCCTTCCCTCCTGCGCCGTGCTAGCAGGCTGCAACTCG
ACCAAGCGCTTTCTGATGTCAAGTGCTTGGTCTTGGGTTTTATGGGCCGG
GAGACGGTGTGCCGGAGGACCTGAGGGAGGTTCGCAGGGAGGGAGGGAAA
GTAGGCGGTAA

Synonyms

Publications