jgi.p|Nanoce1779_2|594835, mRNA_6384 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594835
Unique NamemRNA_6384
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1137
Alignment locationscaffold_15:507475..508611 -

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Properties
Property NameValue
TranscriptId594921
TrackFilteredModels2
ProteinId594835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:507475..508611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594835gene_6384Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594835mRNA_6384-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6384CDS_6384Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6384 ID=mRNA_6384|Name=jgi.p|Nanoce1779_2|594835|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
CACGCGAGCTCCAAATCAACCCCTTCCGGGCCACTTCTCCTACGCGCGAA
CATACGGCAGCAGCAGCGGCAGCAGCAGCAGTTCCAGCAGTAGCAGGAAG
GAGGGGGTGACAAACCGGCAAGCTTTCATCCAACACCTGGTACATGGGCC
CTATCCTGGGAGCATGCGGAAGAATGACCAAGGAAGCGTCCTCCGCACCT
TCCTCCCCTCCACCTCTTTCTATTCCTCCTTTCCCTCCGTCCACCAGCAT
GGCTGCTTGTGTCTGACTACGACGGACGGGGCTAGCGGTCACTCCAGTCT
TCCCACTTCCAGCTTGCAGCTGCTCCTGGTGGTGCTGCTCTTCTACCACG
CTCTGCAGCTGCTCCTGGTGCTCCTGGTGCTGCTGTTCTTGATCGCGTTC
CTTCCCTTCCAACCCCACCACCGCCATCCCGCCTCGATCACGAGAAACAC
GCACGGGAGAAGAAAGTGCCGTGGTTTGTCCTACTCCTCCGCCTGCTGCG
AGCGGGACGGCTCCTGGTGCTGGTGCTGCTGCCATTGCTGCTCCTGCTTC
TATCGCTTCTTGCGGTGGAACTACTTGATGGGAAGGGAAGGAGGCATTAG
CGCCATCGCACTGCTGCTGTCCTTCTTCTTCCTCATTGCTACTGCTGTTA
CCACTTCCAGTGACAGTACCACTGCTGCTGTTCCCACTGCTGCTACTGGT
ACTGGAGCGGTTGCGATGCGTACTGGGGGAGACAGACGAGGACGTCACTG
TTCTCCGCCTGCGCGAGGGAGAGGAAGAGGAGCCCAAGCTTGAACGATCT
CGGCCTGGCAAGGTCCGTAGCATGGCGATCTCACCGCCTTCGCCTGTTGT
CACCATTGCGGATAGCTAGCAGCTGAGTTTGGTGGCTAGTGAGGTGCAGA
TGGGGGAGGGAGACGTTGAAACTTGTCGGTTGCGCGCGACAAAACGAGGC
AGGGGGTGGTTTTGACGAGGAGTTGCTGGTAGCCCTCAATGCGTTCAACT
AGCCATCCTCTCCTCTTCCCTCTCGTGCGCGTCTGGCTGGCTTTCTGTCG
TCGGGCAGAAAAGGATGGGAGGAGAGAGGAGGAGTGAATGCATTAAGTTT
TTGCGATAGGGAGCAGCAATAGTGCACCTTCTACTTC
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protein sequence of jgi.p|Nanoce1779_2|594835

>mRNA_6384-protein ID=mRNA_6384-protein|Name=jgi.p|Nanoce1779_2|594835|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MRKNDQGSVLRTFLPSTSFYSSFPSVHQHGCLCLTTTDGASGHSSLPTSS
LQLLLVVLLFYHALQLLLVLLVLLFLIAFLPFQPHHRHPASITRNTHGRR
KCRGLSYSSACCERDGSWCWCCCHCCSCFYRFLRWNYLMGREGGISAIAL
LLSFFFLIATAVTTSSDSTTAAVPTAATGTGAVAMRTGGDRRGRHCSPPA
RGRGRGAQA*
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mRNA from alignment at scaffold_15:507475..508611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6384 ID=mRNA_6384|Name=jgi.p|Nanoce1779_2|594835|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp|location=Sequence derived from alignment at scaffold_15:507475..508611- (Nannochloropsis oceanica)
CACGCGAGCTCCAAATCAACCCCTTCCGGGCCACTTCTCCTACGCGCGAA
CATACGGCAGCAGCAGCGGCAGCAGCAGCAGTTCCAGCAGTAGCAGGAAG
GAGGGGGTGACAAACCGGCAAGCTTTCATCCAACACCTGGTACATGGGCC
CTATCCTGGGAGCATGCGGAAGAATGACCAAGGAAGCGTCCTCCGCACCT
TCCTCCCCTCCACCTCTTTCTATTCCTCCTTTCCCTCCGTCCACCAGCAT
GGCTGCTTGTGTCTGACTACGACGGACGGGGCTAGCGGTCACTCCAGTCT
TCCCACTTCCAGCTTGCAGCTGCTCCTGGTGGTGCTGCTCTTCTACCACG
CTCTGCAGCTGCTCCTGGTGCTCCTGGTGCTGCTGTTCTTGATCGCGTTC
CTTCCCTTCCAACCCCACCACCGCCATCCCGCCTCGATCACGAGAAACAC
GCACGGGAGAAGAAAGTGCCGTGGTTTGTCCTACTCCTCCGCCTGCTGCG
AGCGGGACGGCTCCTGGTGCTGGTGCTGCTGCCATTGCTGCTCCTGCTTC
TATCGCTTCTTGCGGTGGAACTACTTGATGGGAAGGGAAGGAGGCATTAG
CGCCATCGCACTGCTGCTGTCCTTCTTCTTCCTCATTGCTACTGCTGTTA
CCACTTCCAGTGACAGTACCACTGCTGCTGTTCCCACTGCTGCTACTGGT
ACTGGAGCGGTTGCGATGCGTACTGGGGGAGACAGACGAGGACGTCACTG
TTCTCCGCCTGCGCGAGGGAGAGGAAGAGGAGCCCAAGCTTGAACGATCT
CGGCCTGGCAAGGTCCGTAGCATGGCGATCTCACCGCCTTCGCCTGTTGT
CACCATTGCGGATAGCTAGCAGCTGAGTTTGGTGGCTAGTGAGGTGCAGA
TGGGGGAGGGAGACGTTGAAACTTGTCGGTTGCGCGCGACAAAACGAGGC
AGGGGGTGGTTTTGACGAGGAGTTGCTGGTAGCCCTCAATGCGTTCAACT
AGCCATCCTCTCCTCTTCCCTCTCGTGCGCGTCTGGCTGGCTTTCTGTCG
TCGGGCAGAAAAGGATGGGAGGAGAGAGGAGGAGTGAATGCATTAAGTTT
TTGCGATAGGGAGCAGCAATAGTGCACCTTCTACTTC
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Coding sequence (CDS) from alignment at scaffold_15:507475..508611-

>mRNA_6384 ID=mRNA_6384|Name=jgi.p|Nanoce1779_2|594835|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_15:507475..508611- (Nannochloropsis oceanica)
ATGCGGAAGAATGACCAAGGAAGCGTCCTCCGCACCTTCCTCCCCTCCAC
CTCTTTCTATTCCTCCTTTCCCTCCGTCCACCAGCATGGCTGCTTGTGTC
TGACTACGACGGACGGGGCTAGCGGTCACTCCAGTCTTCCCACTTCCAGC
TTGCAGCTGCTCCTGGTGGTGCTGCTCTTCTACCACGCTCTGCAGCTGCT
CCTGGTGCTCCTGGTGCTGCTGTTCTTGATCGCGTTCCTTCCCTTCCAAC
CCCACCACCGCCATCCCGCCTCGATCACGAGAAACACGCACGGGAGAAGA
AAGTGCCGTGGTTTGTCCTACTCCTCCGCCTGCTGCGAGCGGGACGGCTC
CTGGTGCTGGTGCTGCTGCCATTGCTGCTCCTGCTTCTATCGCTTCTTGC
GGTGGAACTACTTGATGGGAAGGGAAGGAGGCATTAGCGCCATCGCACTG
CTGCTGTCCTTCTTCTTCCTCATTGCTACTGCTGTTACCACTTCCAGTGA
CAGTACCACTGCTGCTGTTCCCACTGCTGCTACTGGTACTGGAGCGGTTG
CGATGCGTACTGGGGGAGACAGACGAGGACGTCACTGTTCTCCGCCTGCG
CGAGGGAGAGGAAGAGGAGCCCAAGCTTGA
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Synonyms
Publications