jgi.p|Nanoce1779_2|594826, mRNA_6383 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594826
Unique NamemRNA_6383
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length996
Alignment locationscaffold_15:503042..504232 +

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Properties
Property NameValue
TranscriptId594912
TrackFilteredModels2
ProteinId594826
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:503042..504232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594826gene_6383Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594826mRNA_6383-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6383CDS_6383Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6383 ID=mRNA_6383|Name=jgi.p|Nanoce1779_2|594826|organism=Nannochloropsis oceanica|type=mRNA|length=996bp
GAAAAGAGGAGCTGAAGACGGCAGATCTTATTGAAATAGGTCGTAAATCA
CACATGCCGAGAAGCAGCAGCGGCAGCAGCAGCAGCACGGGCGCGATGCC
CTCATCTTCTTCGTCCTCCATTTCTTCTTCTTTCGATTCCACCACTGCAA
CTGCGGTCGCAACCTCCAGGGCCAAAAAAGAGAAAAGGACAGAAAACCCT
GGACAAAGAGTGCTGCGACGGGATGAGGAAGCAATCGTGATGGTGCCACG
ATCTTTTCGAGGAGGAGGAGAGAAAAGGGAGGAAAGCAGGAAGAGGCAAT
TCGATCCCCGGGCGCTGCGAGCGATGAAGGATGCTTCTTTGAGTGATCTA
GTTGGACAGTGGGACAACATGGACGAAGAGGAAGCAGCAGTCACCAAGGA
GATGAATGAGGCACGAGACAAGGTCATCGCACAAACCAAGCGAGAGGAGA
GAGTCCAGCGAGGTAAGAGGCAGCTTAGTGAGTATGCAGCGGCGGTCGTG
GCCGGGAAGAAGAAGAAAGTCAAGGGACAAAAGGAGGGCGGGGAGGTATA
CGAGATTTTTGAGCATAGTGGCGGTGGTGATGGCGGAAAAAATAAAAGTA
ACCCGTTCGAGACGCGACAGATGGAGCTGCAGGAGCGAAAGAGGGGACCG
GGGTCAGCTCCGGTGGGTGGAAACACAAGGGGAAGAGGGACACGAAGGGA
CAGGCCCTTGCAGTCGTAGTAGACAGAAGAAAGATGAAGAACCGCTAGAA
GGGGGAAAAGTTAAGAAATTTCATATTTGGTCACTTTTCGAGGATTTGTT
TGTTTTTTTCCATTCTTGGCTCCCAATCGGGCCACAAGAATTTGTTGCAT
ATTCATCCCTTATTATTGTCCGAGTTTTACTAGCGACTTTGACAGATTTT
TTGATCAGGCAAAGTCCCCGGACGGCCCACACAGGGCCAGGAGGAGAAGG
GGGAGGAGGACTAAAAAGGAGGTCAGAGGGAAGGCTACACATAGAG
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protein sequence of jgi.p|Nanoce1779_2|594826

>mRNA_6383-protein ID=mRNA_6383-protein|Name=jgi.p|Nanoce1779_2|594826|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MPRSSSGSSSSTGAMPSSSSSSISSSFDSTTATAVATSRAKKEKRTENPG
QRVLRRDEEAIVMVPRSFRGGGEKREESRKRQFDPRALRAMKDASLSDLV
GQWDNMDEEEAAVTKEMNEARDKVIAQTKREERVQRGKRQLSEYAAAVVA
GKKKKVKGQKEGGEVYEIFEHSGGGDGGKNKSNPFETRQMELQERKRGPG
SAPVGGNTRGRGTRRDRPLQS*
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mRNA from alignment at scaffold_15:503042..504232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6383 ID=mRNA_6383|Name=jgi.p|Nanoce1779_2|594826|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_15:503042..504232+ (Nannochloropsis oceanica)
GAAAAGAGGAGCTGAAGACGGCAGATCTTATTGAAATAGGTCGTAAATCA
CACATGCCGAGAAGCAGCAGCGGCAGCAGCAGCAGCACGGGCGCGATGCC
CTCATCTTCTTCGTCCTCCATTTCTTCTTCTTTCGATTCCACCACTGCAA
CTGCGGTCGCAACCTCCAGGGCCAAAAAAGAGAAAAGGACAGAAAACCCT
GGACAAAGAGTGCTGCGACGGGATGAGGAAGCAATCGTGATGGTGCCACG
ATCTTTTCGAGGAGGAGGAGAGAAAAGGGAGGAAAGCAGGAAGAGGCAAT
TCGATCCCCGGGCGCTGCGAGCGATGAAGGATGCTTCTTTGAGTGATCTA
GGTACGTAGTGGGGCAGGGAGAGGAGAAATTCAGGGCGTCAGCTATGTAT
TCATAGACCGAATGGATGAGAATAATCTATTTTCTTCACTTGGCCAGCGT
GAGATACTCGAAGGACATGCGCATCGATTTATGCCTAATAGACACAAACT
AATTTTTAACACTCTCACTTGCGACACTCCCATACAACACACACAGTTGG
ACAGTGGGACAACATGGACGAAGAGGAAGCAGCAGTCACCAAGGAGATGA
ATGAGGCACGAGACAAGGTCATCGCACAAACCAAGCGAGAGGAGAGAGTC
CAGCGAGGTAAGAGGCAGCTTAGTGAGTATGCAGCGGCGGTCGTGGCCGG
GAAGAAGAAGAAAGTCAAGGGACAAAAGGAGGGCGGGGAGGTATACGAGA
TTTTTGAGCATAGTGGCGGTGGTGATGGCGGAAAAAATAAAAGTAACCCG
TTCGAGACGCGACAGATGGAGCTGCAGGAGCGAAAGAGGGGACCGGGGTC
AGCTCCGGTGGGTGGAAACACAAGGGGAAGAGGGACACGAAGGGACAGGC
CCTTGCAGTCGTAGTAGACAGAAGAAAGATGAAGAACCGCTAGAAGGGGG
AAAAGTTAAGAAATTTCATATTTGGTCACTTTTCGAGGATTTGTTTGTTT
TTTTCCATTCTTGGCTCCCAATCGGGCCACAAGAATTTGTTGCATATTCA
TCCCTTATTATTGTCCGAGTTTTACTAGCGACTTTGACAGATTTTTTGAT
CAGGCAAAGTCCCCGGACGGCCCACACAGGGCCAGGAGGAGAAGGGGGAG
GAGGACTAAAAAGGAGGTCAGAGGGAAGGCTACACATAGAG
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Coding sequence (CDS) from alignment at scaffold_15:503042..504232+

>mRNA_6383 ID=mRNA_6383|Name=jgi.p|Nanoce1779_2|594826|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_15:503042..504232+ (Nannochloropsis oceanica)
ATGCCGAGAAGCAGCAGCGGCAGCAGCAGCAGCACGGGCGCGATGCCCTC
ATCTTCTTCGTCCTCCATTTCTTCTTCTTTCGATTCCACCACTGCAACTG
CGGTCGCAACCTCCAGGGCCAAAAAAGAGAAAAGGACAGAAAACCCTGGA
CAAAGAGTGCTGCGACGGGATGAGGAAGCAATCGTGATGGTGCCACGATC
TTTTCGAGGAGGAGGAGAGAAAAGGGAGGAAAGCAGGAAGAGGCAATTCG
ATCCCCGGGCGCTGCGAGCGATGAAGGATGCTTCTTTGAGTGATCTAGTT
GGACAGTGGGACAACATGGACGAAGAGGAAGCAGCAGTCACCAAGGAGAT
GAATGAGGCACGAGACAAGGTCATCGCACAAACCAAGCGAGAGGAGAGAG
TCCAGCGAGGTAAGAGGCAGCTTAGTGAGTATGCAGCGGCGGTCGTGGCC
GGGAAGAAGAAGAAAGTCAAGGGACAAAAGGAGGGCGGGGAGGTATACGA
GATTTTTGAGCATAGTGGCGGTGGTGATGGCGGAAAAAATAAAAGTAACC
CGTTCGAGACGCGACAGATGGAGCTGCAGGAGCGAAAGAGGGGACCGGGG
TCAGCTCCGGTGGGTGGAAACACAAGGGGAAGAGGGACACGAAGGGACAG
GCCCTTGCAGTCGTAGATGCCGAGAAGCAGCAGCGGCAGCAGCAGCAGCA
CGGGCGCGATGCCCTCATCTTCTTCGTCCTCCATTTCTTCTTCTTTCGAT
TCCACCACTGCAACTGCGGTCGCAACCTCCAGGGCCAAAAAAGAGAAAAG
GACAGAAAACCCTGGACAAAGAGTGCTGCGACGGGATGAGGAAGCAATCG
TGATGGTGCCACGATCTTTTCGAGGAGGAGGAGAGAAAAGGGAGGAAAGC
AGGAAGAGGCAATTCGATCCCCGGGCGCTGCGAGCGATGAAGGATGCTTC
TTTGAGTGATCTAGTTGGACAGTGGGACAACATGGACGAAGAGGAAGCAG
CAGTCACCAAGGAGATGAATGAGGCACGAGACAAGGTCATCGCACAAACC
AAGCGAGAGGAGAGAGTCCAGCGAGGTAAGAGGCAGCTTAGTGAGTATGC
AGCGGCGGTCGTGGCCGGGAAGAAGAAGAAAGTCAAGGGACAAAAGGAGG
GCGGGGAGGTATACGAGATTTTTGAGCATAGTGGCGGTGGTGATGGCGGA
AAAAATAAAAGTAACCCGTTCGAGACGCGACAGATGGAGCTGCAGGAGCG
AAAGAGGGGACCGGGGTCAGCTCCGGTGGGTGGAAACACAAGGGGAAGAG
GGACACGAAGGGACAGGCCCTTGCAGTCGTAG
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Synonyms
Publications