jgi.p|Nanoce1779_2|573602, mRNA_638 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573602
Unique NamemRNA_638
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length373
Alignment locationscaffold_2:67717..68089 +

Link to JBrowse

Properties
Property NameValue
TranscriptId573688
TrackFilteredModels2
ProteinId573602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:67717..68089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573602gene_638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573602mRNA_638-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_638CDS_638Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_638 ID=mRNA_638|Name=jgi.p|Nanoce1779_2|573602|organism=Nannochloropsis oceanica|type=mRNA|length=373bp
GTCTACCCTCCGGCTCCTCCTGCTCGAGGTCCCCGTCCGCCTTCCCGTCC
TTCCCCACCTCCTCCTTCTTCGCCGATGTCCCTCCTGCTCCTCCTGCTCT
TCCTCCTTCTCCTCCTTTTCCTCCTCCTGCTGCTGCTGCAGCTGCCACAG
CTGCTGCTGCCATTTCCAAACTCTCACTCCGAGGGCGGCCCCTTTTCCTC
TTCCCCGTGTTCACCCTCGGACAGGTATGGTCAATCTGGGAGTCGTCCAC
GATCAAAGTCGCGCCCAAAGGGTCTTCGTACGTCCCATGAAACGTGCGCA
TACCGTTTATGATCATCTCGGGGGCGTCGGGTCCGGCCAGATTCTTGGGC
GGGAGGGAGGGAGAGAGGGAGAG
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protein sequence of jgi.p|Nanoce1779_2|573602

>mRNA_638-protein ID=mRNA_638-protein|Name=jgi.p|Nanoce1779_2|573602|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MSLLLLLLFLLLLLFLLLLLLQLPQLLLPFPNSHSEGGPFSSSPCSPSDR
YGQSGSRPRSKSRPKGLRTSHETCAYRL*
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mRNA from alignment at scaffold_2:67717..68089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_638 ID=mRNA_638|Name=jgi.p|Nanoce1779_2|573602|organism=Nannochloropsis oceanica|type=mRNA|length=373bp|location=Sequence derived from alignment at scaffold_2:67717..68089+ (Nannochloropsis oceanica)
GTCTACCCTCCGGCTCCTCCTGCTCGAGGTCCCCGTCCGCCTTCCCGTCC
TTCCCCACCTCCTCCTTCTTCGCCGATGTCCCTCCTGCTCCTCCTGCTCT
TCCTCCTTCTCCTCCTTTTCCTCCTCCTGCTGCTGCTGCAGCTGCCACAG
CTGCTGCTGCCATTTCCAAACTCTCACTCCGAGGGCGGCCCCTTTTCCTC
TTCCCCGTGTTCACCCTCGGACAGGTATGGTCAATCTGGGAGTCGTCCAC
GATCAAAGTCGCGCCCAAAGGGTCTTCGTACGTCCCATGAAACGTGCGCA
TACCGTTTATGATCATCTCGGGGGCGTCGGGTCCGGCCAGATTCTTGGGC
GGGAGGGAGGGAGAGAGGGAGAG
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Coding sequence (CDS) from alignment at scaffold_2:67717..68089+

>mRNA_638 ID=mRNA_638|Name=jgi.p|Nanoce1779_2|573602|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_2:67717..68089+ (Nannochloropsis oceanica)
ATGTCCCTCCTGCTCCTCCTGCTCTTCCTCCTTCTCCTCCTTTTCCTCCT
CCTGCTGCTGCTGCAGCTGCCACAGCTGCTGCTGCCATTTCCAAACTCTC
ACTCCGAGGGCGGCCCCTTTTCCTCTTCCCCGTGTTCACCCTCGGACAGG
TATGGTCAATCTGGGAGTCGTCCACGATCAAAGTCGCGCCCAAAGGGTCT
TCGTACGTCCCATGAAACGTGCGCATACCGTTTATGA
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Synonyms
Publications