jgi.p|Nanoce1779_2|594811, mRNA_6379 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594811
Unique NamemRNA_6379
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1076
Alignment locationscaffold_15:495877..497343 -

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Properties
Property NameValue
TranscriptId594897
TrackFilteredModels2
ProteinId594811
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:495877..497343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594811gene_6379Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594811mRNA_6379-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6379CDS_6379Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6379 ID=mRNA_6379|Name=jgi.p|Nanoce1779_2|594811|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp
ACAGTGACCACGCCATCATCGACCATGTTGACGTCCGCCTGCAGTAGGGT
GGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCTGTCGCCACCCAATGGT
CGCAGTCTACGCCTTTGCTGTCCACGGAGATGATGGCACGGAGCGTGTTT
GGGTCTCGGACAGCGGCTTTCCCCAGAGGCATCAGCAGTGTCAGTAGGCG
CACGTTCATGAGCCAGGGCACAGGCGCAGGGGAGGGCAACGGCAAAGCAG
CGGAGGGCGAAAAGGCAGGAGCAGAGGGGCACAAGGCAGCAGCCGCAGTA
GCAACAGAAGAGGAAAAAGACGAGCAAACCAAGCTCATAGAGAAACTAAC
CGCCGAAAACAAGGAACTGAAAGACAAGGTTCTCTACACCCTTGCCGAAA
TGGAGAACGTCCGCACCATTGCCCGCCGTGACATGGAGAGCGCCAAACAG
TTCGCCCTCCAGTCCTTCGCCAAGCAGCTGCTAGACGTGGCCGACAACCT
CGGTCGTGCCCTCGAGAGTGTCCCTCAAGAAATTCTCGACAATAGTGAGG
GAGGTCGTGAAGGAGGGCTGTTAGCGACGTTGGTGGAGGGGGTGGCAATG
ACGGACACGCAGCTTCAGAAGGTGTTCGGAGCGAATAAGATTGTGAAGTT
CGGCAAGCCAGGGGACACGTTTGATCCGCACTTGCACGATGCGCTATTCG
AGTACGAAGAGGCAGGAAGGGAGGGAGGGAGCGTAGGGCAGGTTTTGAAG
ACGGGGTACACGCTGAATGGGCGCGTCATCCGGCCGGCGCAGGTGGGGAC
GGTTAAAAAGTCGTCGTAAAGGAGTGGGGGGAGGAGAAGGGGGGAGAATA
GTAGCAGAGGGTGCATTTTTGTCGATGAAAAAGAGGGTGTGAGGAGCTGT
GCTGCAATCTGGTATGATGGTCCACGTGGTTGAAGACTTCAGAAGGGGGA
GAGGTGTAAGAGGAAGGAGTCAGTAGAAAGATAGAAAGCTAAAATGAAGG
GAGAACGACCCACGTAAGCGAGCAGCAGATGAGGAGGGCAACCTCTGTGA
TCTCGGTTGCATGTCCATCTCTCCAC
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protein sequence of jgi.p|Nanoce1779_2|594811

>mRNA_6379-protein ID=mRNA_6379-protein|Name=jgi.p|Nanoce1779_2|594811|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MLTSACSRVGHGLKSFARPAVATQWSQSTPLLSTEMMARSVFGSRTAAFP
RGISSVSRRTFMSQGTGAGEGNGKAAEGEKAGAEGHKAAAAVATEEEKDE
QTKLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAK
QLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKV
FGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGR
VIRPAQVGTVKKSS*
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mRNA from alignment at scaffold_15:495877..497343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6379 ID=mRNA_6379|Name=jgi.p|Nanoce1779_2|594811|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp|location=Sequence derived from alignment at scaffold_15:495877..497343- (Nannochloropsis oceanica)
ACAGTGACCACGCCATCATCGACCATGTTGACGTCCGCCTGCAGTAGGGT
GGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCGTAAGTAGCCTCCTCCC
CTCTTCCCCACCCCCCCGTCCTTCCCTTCCGTCTCACTCTTCCACGCACC
GTCCTCACACTCCCTCCTTCCCCTACTCAAACGCAATAAGTGTCGCCACC
CAATGGTCGCAGTCTACGCCTTTGCTGTCCACGGAGATGATGGCACGGAG
CGTGTTTGGGTCTCGGACAGCGGCTTTCCCCAGAGGCATCAGCAGTGTCA
GTAGGCGCACGTTCATGAGCCAGGGCACAGGCGCAGGGGAGGGCAACGTA
CGTGCGTAGATTGGAGTGCTTGAGAAGCAGCAATCTGATTATTTATTGTG
ATCGTCAATTCCTCTGATTCTGTTCGCGTTTCTTTCCTTTCTCAAACCAT
TGCAGGGCAAAGCAGCGGAGGGCGAAAAGGCAGGAGCAGAGGGGCACAAG
GCAGCAGCCGCAGTAGCAACAGAAGAGGTACAGTTACTTATCGCTCCCAA
TTCCTTCTACTTTGAGCACTATTTCGCGCTCTGAATGCTGTAAAGGGGCA
AGCCTGGACAAATAGCACTCGAGTCCCTGAGGCCGCTCTCACCCTTCCCT
CCTCCCTTTCCCTTCTTCGCTTCTCTCCCCTCCTTCGCTTCCCTTCACCA
TAGGAAAAAGACGAGCAAACCAAGCTCATAGAGAAACTAACCGCCGAAAA
CAAGGAACTGAAAGACAAGGTTCTCTACACCCTTGCCGAAATGGAGAACG
TCCGCACCATTGCCCGCCGTGACATGGAGAGCGCCAAACAGTTCGCCCTC
CAGTCCTTCGCCAAGCAGCTGCTAGACGTGGCCGACAACCTCGGTCGTGC
CCTCGAGAGTGTCCCTCAAGAAATTCTCGACAATAGTGAGGGAGGTCGTG
AAGGAGGGCTGTTAGCGACGTTGGTGGAGGGGGTGGCAATGACGGACACG
CAGCTTCAGAAGGTGTTCGGAGCGAATAAGATTGTGAAGTTCGGCAAGCC
AGGGGACACGTTTGATCCGCACTTGCACGATGCGCTATTCGAGTACGAAG
AGGCAGGAAGGGAGGGAGGGAGCGTAGGGCAGGTTTTGAAGACGGGGTAC
ACGCTGAATGGGCGCGTCATCCGGCCGGCGCAGGTGGGGACGGTTAAAAA
GTCGTCGTAAAGGAGTGGGGGGAGGAGAAGGGGGGAGAATAGTAGCAGAG
GGTGCATTTTTGTCGATGAAAAAGAGGGTGTGAGGAGCTGTGCTGCAATC
TGGTATGATGGTCCACGTGGTTGAAGACTTCAGAAGGGGGAGAGGTGTAA
GAGGAAGGAGTCAGTAGAAAGATAGAAAGCTAAAATGAAGGGAGAACGAC
CCACGTAAGCGAGCAGCAGATGAGGAGGGCAACCTCTGTGATCTCGGTTG
CATGTCCATCTCTCCAC
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Coding sequence (CDS) from alignment at scaffold_15:495877..497343-

>mRNA_6379 ID=mRNA_6379|Name=jgi.p|Nanoce1779_2|594811|organism=Nannochloropsis oceanica|type=CDS|length=3180bp|location=Sequence derived from alignment at scaffold_15:495877..497343- (Nannochloropsis oceanica)
GAAAAAGACGAGCAAACCAAGCTCATAGAGAAACTAACCGCCGAAAACAA
GGAACTGAAAGACAAGGTTCTCTACACCCTTGCCGAAATGGAGAACGTCC
GCACCATTGCCCGCCGTGACATGGAGAGCGCCAAACAGTTCGCCCTCCAG
TCCTTCGCCAAGCAGCTGCTAGACGTGGCCGACAACCTCGGTCGTGCCCT
CGAGAGTGTCCCTCAAGAAATTCTCGACAATAGTGAGGGAGGTCGTGAAG
GAGGGCTGTTAGCGACGTTGGTGGAGGGGGTGGCAATGACGGACACGCAG
CTTCAGAAGGTGTTCGGAGCGAATAAGATTGTGAAGTTCGGCAAGCCAGG
GGACACGTTTGATCCGCACTTGCACGATGCGCTATTCGAGTACGAAGAGG
CAGGAAGGGAGGGAGGGAGCGTAGGGCAGGTTTTGAAGACGGGGTACACG
CTGAATGGGCGCGTCATCCGGCCGGCGCAGGTGGGGACGGTTAAAAAGTC
GTCGTAAGGCAAAGCAGCGGAGGGCGAAAAGGCAGGAGCAGAGGGGCACA
AGGCAGCAGCCGCAGTAGCAACAGAAGAGTGTCGCCACCCAATGGTCGCA
GTCTACGCCTTTGCTGTCCACGGAGATGATGGCACGGAGCGTGTTTGGGT
CTCGGACAGCGGCTTTCCCCAGAGGCATCAGCAGTGTCAGTAGGCGCACG
TTCATGAGCCAGGGCACAGGCGCAGGGGAGGGCAACATGTTGACGTCCGC
CTGCAGTAGGGTGGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCGAAAA
AGACGAGCAAACCAAGCTCATAGAGAAACTAACCGCCGAAAACAAGGAAC
TGAAAGACAAGGTTCTCTACACCCTTGCCGAAATGGAGAACGTCCGCACC
ATTGCCCGCCGTGACATGGAGAGCGCCAAACAGTTCGCCCTCCAGTCCTT
CGCCAAGCAGCTGCTAGACGTGGCCGACAACCTCGGTCGTGCCCTCGAGA
GTGTCCCTCAAGAAATTCTCGACAATAGTGAGGGAGGTCGTGAAGGAGGG
CTGTTAGCGACGTTGGTGGAGGGGGTGGCAATGACGGACACGCAGCTTCA
GAAGGTGTTCGGAGCGAATAAGATTGTGAAGTTCGGCAAGCCAGGGGACA
CGTTTGATCCGCACTTGCACGATGCGCTATTCGAGTACGAAGAGGCAGGA
AGGGAGGGAGGGAGCGTAGGGCAGGTTTTGAAGACGGGGTACACGCTGAA
TGGGCGCGTCATCCGGCCGGCGCAGGTGGGGACGGTTAAAAAGTCGTCGT
AAGGCAAAGCAGCGGAGGGCGAAAAGGCAGGAGCAGAGGGGCACAAGGCA
GCAGCCGCAGTAGCAACAGAAGAGTGTCGCCACCCAATGGTCGCAGTCTA
CGCCTTTGCTGTCCACGGAGATGATGGCACGGAGCGTGTTTGGGTCTCGG
ACAGCGGCTTTCCCCAGAGGCATCAGCAGTGTCAGTAGGCGCACGTTCAT
GAGCCAGGGCACAGGCGCAGGGGAGGGCAACATGTTGACGTCCGCCTGCA
GTAGGGTGGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCGAAAAAGACG
AGCAAACCAAGCTCATAGAGAAACTAACCGCCGAAAACAAGGAACTGAAA
GACAAGGTTCTCTACACCCTTGCCGAAATGGAGAACGTCCGCACCATTGC
CCGCCGTGACATGGAGAGCGCCAAACAGTTCGCCCTCCAGTCCTTCGCCA
AGCAGCTGCTAGACGTGGCCGACAACCTCGGTCGTGCCCTCGAGAGTGTC
CCTCAAGAAATTCTCGACAATAGTGAGGGAGGTCGTGAAGGAGGGCTGTT
AGCGACGTTGGTGGAGGGGGTGGCAATGACGGACACGCAGCTTCAGAAGG
TGTTCGGAGCGAATAAGATTGTGAAGTTCGGCAAGCCAGGGGACACGTTT
GATCCGCACTTGCACGATGCGCTATTCGAGTACGAAGAGGCAGGAAGGGA
GGGAGGGAGCGTAGGGCAGGTTTTGAAGACGGGGTACACGCTGAATGGGC
GCGTCATCCGGCCGGCGCAGGTGGGGACGGTTAAAAAGTCGTCGTAAGGC
AAAGCAGCGGAGGGCGAAAAGGCAGGAGCAGAGGGGCACAAGGCAGCAGC
CGCAGTAGCAACAGAAGAGTGTCGCCACCCAATGGTCGCAGTCTACGCCT
TTGCTGTCCACGGAGATGATGGCACGGAGCGTGTTTGGGTCTCGGACAGC
GGCTTTCCCCAGAGGCATCAGCAGTGTCAGTAGGCGCACGTTCATGAGCC
AGGGCACAGGCGCAGGGGAGGGCAACATGTTGACGTCCGCCTGCAGTAGG
GTGGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCGAAAAAGACGAGCAA
ACCAAGCTCATAGAGAAACTAACCGCCGAAAACAAGGAACTGAAAGACAA
GGTTCTCTACACCCTTGCCGAAATGGAGAACGTCCGCACCATTGCCCGCC
GTGACATGGAGAGCGCCAAACAGTTCGCCCTCCAGTCCTTCGCCAAGCAG
CTGCTAGACGTGGCCGACAACCTCGGTCGTGCCCTCGAGAGTGTCCCTCA
AGAAATTCTCGACAATAGTGAGGGAGGTCGTGAAGGAGGGCTGTTAGCGA
CGTTGGTGGAGGGGGTGGCAATGACGGACACGCAGCTTCAGAAGGTGTTC
GGAGCGAATAAGATTGTGAAGTTCGGCAAGCCAGGGGACACGTTTGATCC
GCACTTGCACGATGCGCTATTCGAGTACGAAGAGGCAGGAAGGGAGGGAG
GGAGCGTAGGGCAGGTTTTGAAGACGGGGTACACGCTGAATGGGCGCGTC
ATCCGGCCGGCGCAGGTGGGGACGGTTAAAAAGTCGTCGTAAGGCAAAGC
AGCGGAGGGCGAAAAGGCAGGAGCAGAGGGGCACAAGGCAGCAGCCGCAG
TAGCAACAGAAGAGTGTCGCCACCCAATGGTCGCAGTCTACGCCTTTGCT
GTCCACGGAGATGATGGCACGGAGCGTGTTTGGGTCTCGGACAGCGGCTT
TCCCCAGAGGCATCAGCAGTGTCAGTAGGCGCACGTTCATGAGCCAGGGC
ACAGGCGCAGGGGAGGGCAACATGTTGACGTCCGCCTGCAGTAGGGTGGG
ACATGGGCTGAAGTCCTTTGCTCGGCCAGC
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Synonyms
Publications