jgi.p|Nanoce1779_2|594798, mRNA_6376 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594798
Unique Name	mRNA_6376
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1957
Alignment location	scaffold_15:488195..490151 -

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Properties


Property Name	Value
TranscriptId	594884
Track	FilteredModels2
ProteinId	594798

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:488195..490151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594798	gene_6376	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594798	mRNA_6376-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6376	CDS_6376	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:488195..490151-
coding sequence from alignment at scaffold_15:488195..490151-

mRNA sequence

>mRNA_6376 ID=mRNA_6376|Name=jgi.p|Nanoce1779_2|594798|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp
GGGGGGGATTGTGTATGGGTATGCGTACTTTAAGGACTTGGCACGGGGGA
GGTTGAGTGGGGATTTGAACGGCTTTTTGAAGATTATTGCCAAGGCGGAG
GGAGGCGAGAGGGAGGGAGGGAAGGTGAGGCATACGATCATTGGGGTGCA
CGTTGTGGGGGATGGGGCGAATGAGTTGATTCAGTTGGGCTCCATGCTGG
TTCACTCTCACAGTACCCTAGAGGAAGTGAGCAACATGCCTTTCGCAGCG
GTGACACTCACTTGCTTGTATCAGATTGCGAGTGATGATGCCTTGTGTCA
GAGTCCATTTAGCACAATGAGGAAGCCGGCGGCGGATCCAGGGGTGGTCA
AGGGTTGAGTGGTAAATGAGGGGGAGAAGGGGAAGCAGGAGCGGAAATGA
TGAAGTAGGATTCATTTTTGCCGTAGGCTGGGCGTCGGCATAGTGATAGC
GGACCGAGCGTTTAATTTTGATTCGGTAAGGGCAGGTAAGTGATAAAATG
TGAGGAGGACGGTGTACGAGTGTGAGTTTGTGTAAATACGTTTCACTGAT
GAGCAGCTTTAATAGTGGGTATCTCTTTATTTTAAGTATTGTTGCAATTT
TATTGCGTCCTTCTGTGGACCAAGGACAAGAAAACTGAAAGAATCAACAG
CAGTACCAGAAGCATCGTCAGTAGCAGCGCAACATGCGTGTTTCTCACTC
CATATCGATTTTCTGCCCAGCCAAAATCATAACTATCATACAAAGCATGG
TATGTATATGTAAAATATATTACCCTTCAGCATGCAACCATATTCTCTCT
CTGTAATTGTTTATCCACCTTCTCTTTTTTTCCATTTCAATTTATTTATT
TTTCCGCACATGTATGCATGCGCTCATTCCTACATATCATCCTTTTGCTC
TCCCTCTCCTTCAACTCTACTTGTTACTTCCTAGAAGCATAGGCACGGCT
ACAGCAGCAGCCGCCATCATCTTTTCACACTTTTCCACTCGTGCCGGCGA
ATTTTTTTCGTTGTTTCTCCCACTGGACACTTATACGTCGCCTGCAGTTG
TTTATATGCCCGCGGGCAGGGATCGGCACGTAGTCCACCCGCCTGGAGGA
GCTGCATCGGTGTGTCCGGCACGAGCCCTCCTTAGGCTTGCCCCAAGGCC
TGCCGGGTCGCTGTCGTCACGTCAGCACTGCGCGGGCAGCTTTCAAGCCG
CCAGACGAATTCCCTCGATCGGTACAGGGACCATCGGCGGCTGATGTGAA
ACGACCGAGGAGAGCTTGGACGACTACAGCAGTGGCGGGGCAGGCCGCCA
GCTGTCATCCGTTTTGAGCTTGACAGATGAACTCTATGGATTTGCTCGGC
CGCTGTGGTAGGGATTGTGTCGTGGATGGTGTCAAGGAGAGATTTGCAGG
GGGACATAGCGCGCGCTTGCTGTATTTTGCCGAGTTTGGTGAGGAAGGTG
GTTTGCTCTGTCTGTAAGGTCGAGCTTAGTTCAGCTTGATCTGTCTGAAT
TTTGAGGATGGAAAGATCGAGGGCGTGCAGACGTTCTTGCTGTTTGGTCA
CCACGACAACGGTCCTGTTGCTATTCGTGACTAGTCCAGACACTGATTGG
GTCAAGTGCTGCCTATCGTCTTATTTTTTCGATGTCAGAGTAGACCTGGA
AGCCCGTGACAGCAACGATGGCGAGCATAGCTAGCCCCGAAGCGATCCAG
AGGACCACGTCATAGGACTTGTTATATGTAACAGCCGGGGTACAAATCGA
GAGGCTGTGCGTGCCTTGCAAAGAGCCAGAATCGTTGAATGAGTTGTGTT
CATAGTGGTCCTGGCCTTCCTCGTTGTGGGGGGCCGTGCTGTATGCTCTG
CATGTGACTATATATATATATATATATATCGTATATCGTTCGTCTGCGGT
TAGTTCTTTTGAGTTCCTACATCTCTCTAGAACTATCGCATGCAACCTGA
CGACTTG

protein sequence of jgi.p|Nanoce1779_2|594798

>mRNA_6376-protein ID=mRNA_6376-protein|Name=jgi.p|Nanoce1779_2|594798|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MHALIPTYHPFALPLLQLYLLLPRSIGTATAAAAIIFSHFSTRAGEFFSL
FLPLDTYTSPAVVYMPAGRDRHVVHPPGGAASVCPARALLRLAPRPAGSL
SSRQHCAGSFQAARRIPSIGTGTIGG*

mRNA from alignment at scaffold_15:488195..490151-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6376 ID=mRNA_6376|Name=jgi.p|Nanoce1779_2|594798|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp|location=Sequence derived from alignment at scaffold_15:488195..490151- (Nannochloropsis oceanica)
GGGGGGGATTGTGTATGGGTATGCGTACTTTAAGGACTTGGCACGGGGGA
GGTTGAGTGGGGATTTGAACGGCTTTTTGAAGATTATTGCCAAGGCGGAG
GGAGGCGAGAGGGAGGGAGGGAAGGTGAGGCATACGATCATTGGGGTGCA
CGTTGTGGGGGATGGGGCGAATGAGTTGATTCAGTTGGGCTCCATGCTGG
TTCACTCTCACAGTACCCTAGAGGAAGTGAGCAACATGCCTTTCGCAGCG
GTGACACTCACTTGCTTGTATCAGATTGCGAGTGATGATGCCTTGTGTCA
GAGTCCATTTAGCACAATGAGGAAGCCGGCGGCGGATCCAGGGGTGGTCA
AGGGTTGAGTGGTAAATGAGGGGGAGAAGGGGAAGCAGGAGCGGAAATGA
TGAAGTAGGATTCATTTTTGCCGTAGGCTGGGCGTCGGCATAGTGATAGC
GGACCGAGCGTTTAATTTTGATTCGGTAAGGGCAGGTAAGTGATAAAATG
TGAGGAGGACGGTGTACGAGTGTGAGTTTGTGTAAATACGTTTCACTGAT
GAGCAGCTTTAATAGTGGGTATCTCTTTATTTTAAGTATTGTTGCAATTT
TATTGCGTCCTTCTGTGGACCAAGGACAAGAAAACTGAAAGAATCAACAG
CAGTACCAGAAGCATCGTCAGTAGCAGCGCAACATGCGTGTTTCTCACTC
CATATCGATTTTCTGCCCAGCCAAAATCATAACTATCATACAAAGCATGG
TATGTATATGTAAAATATATTACCCTTCAGCATGCAACCATATTCTCTCT
CTGTAATTGTTTATCCACCTTCTCTTTTTTTCCATTTCAATTTATTTATT
TTTCCGCACATGTATGCATGCGCTCATTCCTACATATCATCCTTTTGCTC
TCCCTCTCCTTCAACTCTACTTGTTACTTCCTAGAAGCATAGGCACGGCT
ACAGCAGCAGCCGCCATCATCTTTTCACACTTTTCCACTCGTGCCGGCGA
ATTTTTTTCGTTGTTTCTCCCACTGGACACTTATACGTCGCCTGCAGTTG
TTTATATGCCCGCGGGCAGGGATCGGCACGTAGTCCACCCGCCTGGAGGA
GCTGCATCGGTGTGTCCGGCACGAGCCCTCCTTAGGCTTGCCCCAAGGCC
TGCCGGGTCGCTGTCGTCACGTCAGCACTGCGCGGGCAGCTTTCAAGCCG
CCAGACGAATTCCCTCGATCGGTACAGGGACCATCGGCGGCTGATGTGAA
ACGACCGAGGAGAGCTTGGACGACTACAGCAGTGGCGGGGCAGGCCGCCA
GCTGTCATCCGTTTTGAGCTTGACAGATGAACTCTATGGATTTGCTCGGC
CGCTGTGGTAGGGATTGTGTCGTGGATGGTGTCAAGGAGAGATTTGCAGG
GGGACATAGCGCGCGCTTGCTGTATTTTGCCGAGTTTGGTGAGGAAGGTG
GTTTGCTCTGTCTGTAAGGTCGAGCTTAGTTCAGCTTGATCTGTCTGAAT
TTTGAGGATGGAAAGATCGAGGGCGTGCAGACGTTCTTGCTGTTTGGTCA
CCACGACAACGGTCCTGTTGCTATTCGTGACTAGTCCAGACACTGATTGG
GTCAAGTGCTGCCTATCGTCTTATTTTTTCGATGTCAGAGTAGACCTGGA
AGCCCGTGACAGCAACGATGGCGAGCATAGCTAGCCCCGAAGCGATCCAG
AGGACCACGTCATAGGACTTGTTATATGTAACAGCCGGGGTACAAATCGA
GAGGCTGTGCGTGCCTTGCAAAGAGCCAGAATCGTTGAATGAGTTGTGTT
CATAGTGGTCCTGGCCTTCCTCGTTGTGGGGGGCCGTGCTGTATGCTCTG
CATGTGACTATATATATATATATATATATCGTATATCGTTCGTCTGCGGT
TAGTTCTTTTGAGTTCCTACATCTCTCTAGAACTATCGCATGCAACCTGA
CGACTTG

Coding sequence (CDS) from alignment at scaffold_15:488195..490151-

>mRNA_6376 ID=mRNA_6376|Name=jgi.p|Nanoce1779_2|594798|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_15:488195..490151- (Nannochloropsis oceanica)
ATGCATGCGCTCATTCCTACATATCATCCTTTTGCTCTCCCTCTCCTTCA
ACTCTACTTGTTACTTCCTAGAAGCATAGGCACGGCTACAGCAGCAGCCG
CCATCATCTTTTCACACTTTTCCACTCGTGCCGGCGAATTTTTTTCGTTG
TTTCTCCCACTGGACACTTATACGTCGCCTGCAGTTGTTTATATGCCCGC
GGGCAGGGATCGGCACGTAGTCCACCCGCCTGGAGGAGCTGCATCGGTGT
GTCCGGCACGAGCCCTCCTTAGGCTTGCCCCAAGGCCTGCCGGGTCGCTG
TCGTCACGTCAGCACTGCGCGGGCAGCTTTCAAGCCGCCAGACGAATTCC
CTCGATCGGTACAGGGACCATCGGCGGCTGA

Synonyms

Publications