jgi.p|Nanoce1779_2|594782, mRNA_6375 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594782
Unique NamemRNA_6375
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length823
Alignment locationscaffold_15:485572..486420 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594868
TrackFilteredModels2
ProteinId594782
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:485572..486420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594782gene_6375Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594782mRNA_6375-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6375CDS_6375Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6375 ID=mRNA_6375|Name=jgi.p|Nanoce1779_2|594782|organism=Nannochloropsis oceanica|type=mRNA|length=823bp
GAAGGGCCAAATTGAAAGATATATCAATTATCTGTACAAATGACTGAGTC
ATTACTCGAAACATCACAAAGCTGCTTTTAAAAGTTGCGGGATAGCTGGA
GGGAGGTTGGCGGTTACAGGCCCGTCGGAGCTTTCGAGCTCACTCCCCTT
ACACACGATGCATTGGAAATGTTTCTGAAAGAAACAGGCAGAAGGAAGGT
GTCAATGAGGCACCGTCATGCGTCTAAGTGCAGATATTGTGCTCATGTGC
CAACTACATCCCACTTACAGGCACAACATGGAGTTGCCGTGTGACAAACA
ACAGTTTTCTGTACCCTCCGGTCAGAGCGACAACTTTGGCGCCGCTGGTG
TCCAGGTCTCTATCTCCGCCCCTGCCCCACAACGCTACCGTAGCAAATAC
CGCCTCTTGGCCTGTCATCGGGATGATGCACCTGCCAAGACCAACGAAGT
ACGCGTCACCTACCAAGGACCAGTTAAGAGTTACCTGGGCTATGCCATGG
CCCTGTTCGAGGAGCGCGGTGCCCGGGCCGTGGCGCTGAAAGGCATGGGG
AGGGCCATCCACAAGGCCTTGACGGTTGCCGAAATTTTGAAACGCAGCTT
GCCTGGACTCCATCAACGCACTGAAATTGGATCCCTGCCGTTCAAAGAGG
TGTGGGCACCGTTGGAGGAAGGCTTGAATCGCGTCGAGTCGACGCATCCT
CCTCCCCTCGACATTCGCCATTTTTGCCGAATAATCGTCCAACGTGCGTT
AAGACTTGAAGGGGGCGGATCGGTCAGCCATATGAGAAGCTGCCATAAAG
AGGACTCCCCTTGGTCCCTATGA
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protein sequence of jgi.p|Nanoce1779_2|594782

>mRNA_6375-protein ID=mRNA_6375-protein|Name=jgi.p|Nanoce1779_2|594782|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MELPCDKQQFSVPSGQSDNFGAAGVQVSISAPAPQRYRSKYRLLACHRDD
APAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTV
AEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTHPPPLDIRHFC
RIIVQRALRLEGGGSVSHMRSCHKEDSPWSL*
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mRNA from alignment at scaffold_15:485572..486420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6375 ID=mRNA_6375|Name=jgi.p|Nanoce1779_2|594782|organism=Nannochloropsis oceanica|type=mRNA|length=849bp|location=Sequence derived from alignment at scaffold_15:485572..486420+ (Nannochloropsis oceanica)
GAAGGGCCAAATTGAAAGATATATCAATTATCTGTACAAATGACTGAGTC ATTACTCGAAACATCACAAAGCTGCTTTTAAAAGTTGCGGGATAGCTGGA GGGAGGTTGGCGGTTACAGGCCCGTCGGAGCTTTCGAGCTCACTCCCCTT ACACACGATGCATTGGAAATGTTTCTGAAAGAAACAGGCAGAAGGAAGGT GTCAATGAGGCACCGTCATGCGTCTAAGTGCAGATATTGTGCTCATGTGC CAACTACATCCCACTTACAGGCACAACATGGAGTTGCCGTGTGACAAACA ACAGTTTTCTGTACCCTCCGGTCAGAGCGACAACTTTGGCGCCGCTGGTG TCCAGGTCTCTATCTCCGCCCCTGCCCCACAACGCTACCGTAGCAAATAC CGCCTCTTGGCCTGTCATCGGGATGATGCACCTGCCAAGACCAACGAAGT ACGCGTCACCTACCAAGGACCAGTTAAGAGTTACCTGGGCTATGCCATGG CCCTGTTCGAGGAGCGCGGTGCCCGGGCCGTGGCGCTGAAAGGCATGGGG AGGGCCATCCACAAGGCCTTGACGGTTGCCGAAATTTTGAAACGCAGCTT GCCTGGACTCCATCAACGCACTGAAATTGGATCCCTGCCGTTCAAAGAGG TGTGGGCACCGTTGGAGGAAGGCTTGAATCGCGTCGAGTCGACGCGTTAC ATTTCTTCACGCTATCGAAAGATCCTCCTCCCCTCGACATTCGCCATTTT TGCCGAATAATCGTCCAACGTGCGTTAAGACTTGAAGGGGGCGGATCGGT CAGCCATATGAGAAGCTGCCATAAAGAGGACTCCCCTTGGTCCCTATGA
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Coding sequence (CDS) from alignment at scaffold_15:485572..486420+

>mRNA_6375 ID=mRNA_6375|Name=jgi.p|Nanoce1779_2|594782|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_15:485572..486420+ (Nannochloropsis oceanica)
ATGGAGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCTCCGGTCAGAG
CGACAACTTTGGCGCCGCTGGTGTCCAGGTCTCTATCTCCGCCCCTGCCC
CACAACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCATCGGGATGAT
GCACCTGCCAAGACCAACGAAGTACGCGTCACCTACCAAGGACCAGTTAA
GAGTTACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGCGGTGCCCGGG
CCGTGGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGCCTTGACGGTT
GCCGAAATTTTGAAACGCAGCTTGCCTGGACTCCATCAACGCACTGAAAT
TGGATCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAGGAAGGCTTGA
ATCGCGTCGAGTCGACGCATCCTCCTCCCCTCGACATTCGCCATTTTTGC
CGAATAATCGTCCAACGTGCGTTAAGACTTGAAGGGGGCGGATCGGTCAG
CCATATGAGAAGCTGCCATAAAGAGGACTCCCCTTGGTCCCTATGAATGG
AGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCTCCGGTCAGAGCGAC
AACTTTGGCGCCGCTGGTGTCCAGGTCTCTATCTCCGCCCCTGCCCCACA
ACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCATCGGGATGATGCAC
CTGCCAAGACCAACGAAGTACGCGTCACCTACCAAGGACCAGTTAAGAGT
TACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGCGGTGCCCGGGCCGT
GGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGCCTTGACGGTTGCCG
AAATTTTGAAACGCAGCTTGCCTGGACTCCATCAACGCACTGAAATTGGA
TCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAGGAAGGCTTGAATCG
CGTCGAGTCGACGCATCCTCCTCCCCTCGACATTCGCCATTTTTGCCGAA
TAATCGTCCAACGTGCGTTAAGACTTGAAGGGGGCGGATCGGTCAGCCAT
ATGAGAAGCTGCCATAAAGAGGACTCCCCTTGGTCCCTATGA
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Synonyms
Publications