jgi.p|Nanoce1779_2|594778, mRNA_6374 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594778
Unique NamemRNA_6374
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1127
Alignment locationscaffold_15:483547..484673 -

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Properties
Property NameValue
TranscriptId594864
TrackFilteredModels2
ProteinId594778
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:483547..484673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594778gene_6374Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594778mRNA_6374-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6374CDS_6374Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6374 ID=mRNA_6374|Name=jgi.p|Nanoce1779_2|594778|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp
AGGTAGCATGGTTACGCTAAGAAGGCCGTGGCGGAGAGCATGGTCGCGGG
GTAAAGTCCTCGCTCTCGTCCTTGGAGTCCTGCTCAGCCCACCATTTGCT
CAAGCCTACGTAAAGCCCCCCATCCCCTCCATGGAGATGCATCGTCCAAA
ACACGATGCCCTCCACCATCGTCGCTGTGCCCTGCAGCACATTGCTGGCA
TGGCTAGTGGGCTTCTCCTTTGGGGGGGCGTCGCACCATCAGCATGGGCA
GCGGACAGTAGCGGCGGACGCAAGGGACTCGTTAACCTGCTGCGAGTACG
GGCGTATATTGTGACCCTCAAAGAAACCCTTCAAGAATTGCTCGACAACG
GTGAAAAGTCCGCTCCGGCAGAAATCAATCAACAGATCAAATATTTGGTG
CGCACGATTCGCATGGCCGAATCCATACATGAGGCAGCCATGTTGGTAGA
GGGTGGGGACAGGGCTCGGGACGCCGCCAGGACTGCAGGAAGAGCCAGTT
ACGAGTATTTGACTCAGGTCATTGAATTTAGTGGGTTTGAAGACATGAAA
CGCGACGGGGTGAGCAAGTACGCCACTTTATCCAGCCCTGAGCGGATTCA
GTTTGCGCTCAAATGTCTGGCGGCTGCGGATTTAGGTATATGGCGGGAAT
GGCATGACTGGGAAAAAGGAATTCTTGGTTGGGCAGCAGAGGCGTTATAT
ACGTTGACATCCTATTAATATGCTCAGTCTTGTTTTGAGCAAGATGAATG
TAGGCATTCTTCATACGATAAAGATCGTGTCATGCTCTTTATGTATATAA
CTTTTCCTGAAAGTCATCAATAATCTGCCCAAAACTCACATCCTCCCCCA
TTCATTCTTTCCACTTTCTCTGTCCCTCCTCCTTATTTAAATTAACAGAA
CTTAGTCGGTACTTCCGCTACTTTCCGCCGGCGGTGCTTGCCGATGCGCA
AGGCATCTACGAGTCTTACTTTTTGTCTGGTGGCGGATGAGGAAGGGTCT
GAGAGCAAAATGAAGAACAGAATGATAATAAGATGTATATCTTTAAAGTG
TATGACCAACCAGCCGGCAGCTCTACTGACTGAATGCCTCTGTTGCGCAT
CCATCTTCCTTAAAGGTTCTTTTTCAT
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protein sequence of jgi.p|Nanoce1779_2|594778

>mRNA_6374-protein ID=mRNA_6374-protein|Name=jgi.p|Nanoce1779_2|594778|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MVTLRRPWRRAWSRGKVLALVLGVLLSPPFAQAYVKPPIPSMEMHRPKHD
ALHHRRCALQHIAGMASGLLLWGGVAPSAWAADSSGGRKGLVNLLRVRAY
IVTLKETLQELLDNGEKSAPAEINQQIKYLVRTIRMAESIHEAAMLVEGG
DRARDAARTAGRASYEYLTQVIEFSGFEDMKRDGVSKYATLSSPERIQFA
LKCLAAADLGIWREWHDWEKGILGWAAEALYTLTSY*
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mRNA from alignment at scaffold_15:483547..484673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6374 ID=mRNA_6374|Name=jgi.p|Nanoce1779_2|594778|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp|location=Sequence derived from alignment at scaffold_15:483547..484673- (Nannochloropsis oceanica)
AGGTAGCATGGTTACGCTAAGAAGGCCGTGGCGGAGAGCATGGTCGCGGG
GTAAAGTCCTCGCTCTCGTCCTTGGAGTCCTGCTCAGCCCACCATTTGCT
CAAGCCTACGTAAAGCCCCCCATCCCCTCCATGGAGATGCATCGTCCAAA
ACACGATGCCCTCCACCATCGTCGCTGTGCCCTGCAGCACATTGCTGGCA
TGGCTAGTGGGCTTCTCCTTTGGGGGGGCGTCGCACCATCAGCATGGGCA
GCGGACAGTAGCGGCGGACGCAAGGGACTCGTTAACCTGCTGCGAGTACG
GGCGTATATTGTGACCCTCAAAGAAACCCTTCAAGAATTGCTCGACAACG
GTGAAAAGTCCGCTCCGGCAGAAATCAATCAACAGATCAAATATTTGGTG
CGCACGATTCGCATGGCCGAATCCATACATGAGGCAGCCATGTTGGTAGA
GGGTGGGGACAGGGCTCGGGACGCCGCCAGGACTGCAGGAAGAGCCAGTT
ACGAGTATTTGACTCAGGTCATTGAATTTAGTGGGTTTGAAGACATGAAA
CGCGACGGGGTGAGCAAGTACGCCACTTTATCCAGCCCTGAGCGGATTCA
GTTTGCGCTCAAATGTCTGGCGGCTGCGGATTTAGGTATATGGCGGGAAT
GGCATGACTGGGAAAAAGGAATTCTTGGTTGGGCAGCAGAGGCGTTATAT
ACGTTGACATCCTATTAATATGCTCAGTCTTGTTTTGAGCAAGATGAATG
TAGGCATTCTTCATACGATAAAGATCGTGTCATGCTCTTTATGTATATAA
CTTTTCCTGAAAGTCATCAATAATCTGCCCAAAACTCACATCCTCCCCCA
TTCATTCTTTCCACTTTCTCTGTCCCTCCTCCTTATTTAAATTAACAGAA
CTTAGTCGGTACTTCCGCTACTTTCCGCCGGCGGTGCTTGCCGATGCGCA
AGGCATCTACGAGTCTTACTTTTTGTCTGGTGGCGGATGAGGAAGGGTCT
GAGAGCAAAATGAAGAACAGAATGATAATAAGATGTATATCTTTAAAGTG
TATGACCAACCAGCCGGCAGCTCTACTGACTGAATGCCTCTGTTGCGCAT
CCATCTTCCTTAAAGGTTCTTTTTCAT
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Coding sequence (CDS) from alignment at scaffold_15:483547..484673-

>mRNA_6374 ID=mRNA_6374|Name=jgi.p|Nanoce1779_2|594778|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_15:483547..484673- (Nannochloropsis oceanica)
ATGGTTACGCTAAGAAGGCCGTGGCGGAGAGCATGGTCGCGGGGTAAAGT
CCTCGCTCTCGTCCTTGGAGTCCTGCTCAGCCCACCATTTGCTCAAGCCT
ACGTAAAGCCCCCCATCCCCTCCATGGAGATGCATCGTCCAAAACACGAT
GCCCTCCACCATCGTCGCTGTGCCCTGCAGCACATTGCTGGCATGGCTAG
TGGGCTTCTCCTTTGGGGGGGCGTCGCACCATCAGCATGGGCAGCGGACA
GTAGCGGCGGACGCAAGGGACTCGTTAACCTGCTGCGAGTACGGGCGTAT
ATTGTGACCCTCAAAGAAACCCTTCAAGAATTGCTCGACAACGGTGAAAA
GTCCGCTCCGGCAGAAATCAATCAACAGATCAAATATTTGGTGCGCACGA
TTCGCATGGCCGAATCCATACATGAGGCAGCCATGTTGGTAGAGGGTGGG
GACAGGGCTCGGGACGCCGCCAGGACTGCAGGAAGAGCCAGTTACGAGTA
TTTGACTCAGGTCATTGAATTTAGTGGGTTTGAAGACATGAAACGCGACG
GGGTGAGCAAGTACGCCACTTTATCCAGCCCTGAGCGGATTCAGTTTGCG
CTCAAATGTCTGGCGGCTGCGGATTTAGGTATATGGCGGGAATGGCATGA
CTGGGAAAAAGGAATTCTTGGTTGGGCAGCAGAGGCGTTATATACGTTGA
CATCCTATTAA
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Synonyms
Publications