jgi.p|Nanoce1779_2|640347, mRNA_6372 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640347
Unique NamemRNA_6372
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length345
Alignment locationscaffold_15:479276..479620 -

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Properties
Property NameValue
TranscriptId640433
TrackFilteredModels2
ProteinId640347
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:479276..479620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640347gene_6372Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6372CDS_6372Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640347mRNA_6372-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6372 ID=mRNA_6372|Name=jgi.p|Nanoce1779_2|640347|organism=Nannochloropsis oceanica|type=mRNA|length=345bp
ATGTTGCGCCATCAGATCATCCAGGACACCCTGCTCCGCATCCCGACCAC
TGCAAGCGTCATTTCCAATGCCTTGTGTCTGCTGGGCCTCGTCCTTTGTA
TCGCCTTGGCAGCGGTAGGGACCGTTTACTTCATGGGTCCGCAGTGCGAG
GACAAATCGATGCTGTTGCCCCAAAGACAAAAGCAGCAAACATCCTTGCT
GCCCTCGACTGTGACGCCGCTGCCAACCACCTCCATCGTCACAGCGTGCC
GCGTCGAACCGCAACAAGCGCCCACTCCCCAGGCCTCGCGCCCCGCTTCC
TCGTGCAACATGAACCTGTCCCGATCAACTGTCGCTGCTTTTTAA
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protein sequence of jgi.p|Nanoce1779_2|640347

>mRNA_6372-protein ID=mRNA_6372-protein|Name=jgi.p|Nanoce1779_2|640347|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MLRHQIIQDTLLRIPTTASVISNALCLLGLVLCIALAAVGTVYFMGPQCE
DKSMLLPQRQKQQTSLLPSTVTPLPTTSIVTACRVEPQQAPTPQASRPAS
SCNMNLSRSTVAAF*
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mRNA from alignment at scaffold_15:479276..479620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6372 ID=mRNA_6372|Name=jgi.p|Nanoce1779_2|640347|organism=Nannochloropsis oceanica|type=mRNA|length=345bp|location=Sequence derived from alignment at scaffold_15:479276..479620- (Nannochloropsis oceanica)
ATGTTGCGCCATCAGATCATCCAGGACACCCTGCTCCGCATCCCGACCAC
TGCAAGCGTCATTTCCAATGCCTTGTGTCTGCTGGGCCTCGTCCTTTGTA
TCGCCTTGGCAGCGGTAGGGACCGTTTACTTCATGGGTCCGCAGTGCGAG
GACAAATCGATGCTGTTGCCCCAAAGACAAAAGCAGCAAACATCCTTGCT
GCCCTCGACTGTGACGCCGCTGCCAACCACCTCCATCGTCACAGCGTGCC
GCGTCGAACCGCAACAAGCGCCCACTCCCCAGGCCTCGCGCCCCGCTTCC
TCGTGCAACATGAACCTGTCCCGATCAACTGTCGCTGCTTTTTAA
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Coding sequence (CDS) from alignment at scaffold_15:479276..479620-

>mRNA_6372 ID=mRNA_6372|Name=jgi.p|Nanoce1779_2|640347|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_15:479276..479620- (Nannochloropsis oceanica)
ATGTTGCGCCATCAGATCATCCAGGACACCCTGCTCCGCATCCCGACCAC
TGCAAGCGTCATTTCCAATGCCTTGTGTCTGCTGGGCCTCGTCCTTTGTA
TCGCCTTGGCAGCGGTAGGGACCGTTTACTTCATGGGTCCGCAGTGCGAG
GACAAATCGATGCTGTTGCCCCAAAGACAAAAGCAGCAAACATCCTTGCT
GCCCTCGACTGTGACGCCGCTGCCAACCACCTCCATCGTCACAGCGTGCC
GCGTCGAACCGCAACAAGCGCCCACTCCCCAGGCCTCGCGCCCCGCTTCC
TCGTGCAACATGAACCTGTCCCGATCAACTGTCGCTGCTTTTTAA
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Synonyms
Publications