jgi.p|Nanoce1779_2|530190, mRNA_6371 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530190
Unique NamemRNA_6371
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length801
Alignment locationscaffold_15:477847..478707 +

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Properties
Property NameValue
TranscriptId530276
TrackFilteredModels2
ProteinId530190
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:477847..478707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530190gene_6371Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530190mRNA_6371-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6371CDS_6371Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6371 ID=mRNA_6371|Name=jgi.p|Nanoce1779_2|530190|organism=Nannochloropsis oceanica|type=mRNA|length=801bp
ATGTGCACTGCCCAACCATCACTCAAAGTGACGTCGATTCATTCCCGAAT
CCACGACGGGCACGGTTTCGTTGCCTTCGACGAATCTACCGACACTACAT
ACCTGGCCTTTACGGGAACTGACCCTTTGGCCTTGCAGGATTGGTTTGAC
GACCTGAATTTCTTCCCTGAACCCTTTCCAGATTGTGAAGGCTGTTGGGT
GGACCGCGGATTTTACCACACCTACCTGGAGTTACGCGATCAAGTGCTTG
CCATTCTTGCTGCGTACCATCGGGAGTATCCTACCCCGGTCCTGCACCTG
ACGGGCCATTCCCTAGGAGGAGCCTTGGCAGTATTTGCGGCTTTGGAATT
GATCCACACATTGGGACTGCGGGTCAGTACGCTCTACACTTTTGGACAGC
CCCGTATTGGCAATGTTCCTTTTCAGACATTTCTTCAAGCTAGTCTAGAG
GCATCGTCTTGTGCGCATTTTCGGGTGACACACAGTCGGGACCCTGTTCC
TCATTTGCCTCCATCGATCCCTCCGACGCATTCATATGGCTTCCGACATG
AGCCACAGGAAGTGTATTACCCCGGCGATGACGATGTCTGTGCATTTGTC
GTCTGTGATCCTGAGGAAGGGGAAGACCCCCGCGGGAGCGATCAAAACGA
TTTTCCACTGAATTTTGTGGATCATATTACGTATTTAGGATTTCCGTTTA
CACTGAACTATTTGCAGTGCGAATTCTCTTCCGTGGATGAATCAAGAAGA
AAGGAGCCCGAGCCGTTTCTGAGAAGACACAAGGCGGTGGGAAGCGTGTA
A
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protein sequence of jgi.p|Nanoce1779_2|530190

>mRNA_6371-protein ID=mRNA_6371-protein|Name=jgi.p|Nanoce1779_2|530190|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MCTAQPSLKVTSIHSRIHDGHGFVAFDESTDTTYLAFTGTDPLALQDWFD
DLNFFPEPFPDCEGCWVDRGFYHTYLELRDQVLAILAAYHREYPTPVLHL
TGHSLGGALAVFAALELIHTLGLRVSTLYTFGQPRIGNVPFQTFLQASLE
ASSCAHFRVTHSRDPVPHLPPSIPPTHSYGFRHEPQEVYYPGDDDVCAFV
VCDPEEGEDPRGSDQNDFPLNFVDHITYLGFPFTLNYLQCEFSSVDESRR
KEPEPFLRRHKAVGSV*
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mRNA from alignment at scaffold_15:477847..478707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6371 ID=mRNA_6371|Name=jgi.p|Nanoce1779_2|530190|organism=Nannochloropsis oceanica|type=mRNA|length=861bp|location=Sequence derived from alignment at scaffold_15:477847..478707+ (Nannochloropsis oceanica)
ATGTGCACTGCCCAACCATCACTCAAAGTGACGTCGATTCATTCCCGAAT
CCACGACGGGCACGGTTTCGTTGCCTTCGACGAATCTACCGACACTACAT
ACCTGGCCTTTACGGGAACTGACCCTTTGGCCTTGCAGGATTGGTTTGAC
GACCTGAATTTCTTCCCTGAACCCTTTCCAGATTGTGAAGGCTGTTGGGT
GGACCGCGGATTTTACCACACCTACCTGGAGTTACGCGATCAAGTGCTTG
CCATTCTTGCTGCGTACCATCGGGAGTATCCTACCCCGGTCCTGCACCTG
ACGGGCCATTCCCTAGGAGGAGCCTTGGCAGTATTTGCGGCTTTGGAATT
GATCCACACATTGGGACTGCGGGTCAGTACGCTCTACACTTTTGGACAGC
CCCGTATTGGCAATGTTCCTTTTCAGACATTTCTTCAAGCTAGTCTAGAG
GCATCGTCTTGTGCGCATTTTCGGGTGACACACAGTCGGGACCCTGTTCC
TCATTTGCCTCCATCGATCCCTCCGACGCATTCATATGGCTTCCGACATG
AGCCACAGGAAGTGTATTACCCGTGTGGGACTGGCCGAGGGGTCGACGGA
TGGAGCAGCCGCAGCATCAATAGTAGCAGCAGCGGCGATGACGATGTCTG
TGCATTTGTCGTCTGTGATCCTGAGGAAGGGGAAGACCCCCGCGGGAGCG
ATCAAAACGATTTTCCACTGAATTTTGTGGATCATATTACGTATTTAGGA
TTTCCGTTTACACTGAACTATTTGCAGTGCGAATTCTCTTCCGTGGATGA
ATCAAGAAGAAAGGAGCCCGAGCCGTTTCTGAGAAGACACAAGGCGGTGG
GAAGCGTGTAA
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Coding sequence (CDS) from alignment at scaffold_15:477847..478707+

>mRNA_6371 ID=mRNA_6371|Name=jgi.p|Nanoce1779_2|530190|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_15:477847..478707+ (Nannochloropsis oceanica)
ATGTGCACTGCCCAACCATCACTCAAAGTGACGTCGATTCATTCCCGAAT
CCACGACGGGCACGGTTTCGTTGCCTTCGACGAATCTACCGACACTACAT
ACCTGGCCTTTACGGGAACTGACCCTTTGGCCTTGCAGGATTGGTTTGAC
GACCTGAATTTCTTCCCTGAACCCTTTCCAGATTGTGAAGGCTGTTGGGT
GGACCGCGGATTTTACCACACCTACCTGGAGTTACGCGATCAAGTGCTTG
CCATTCTTGCTGCGTACCATCGGGAGTATCCTACCCCGGTCCTGCACCTG
ACGGGCCATTCCCTAGGAGGAGCCTTGGCAGTATTTGCGGCTTTGGAATT
GATCCACACATTGGGACTGCGGGTCAGTACGCTCTACACTTTTGGACAGC
CCCGTATTGGCAATGTTCCTTTTCAGACATTTCTTCAAGCTAGTCTAGAG
GCATCGTCTTGTGCGCATTTTCGGGTGACACACAGTCGGGACCCTGTTCC
TCATTTGCCTCCATCGATCCCTCCGACGCATTCATATGGCTTCCGACATG
AGCCACAGGAAGTGTATTACCCCGGCGATGACGATGTCTGTGCATTTGTC
GTCTGTGATCCTGAGGAAGGGGAAGACCCCCGCGGGAGCGATCAAAACGA
TTTTCCACTGAATTTTGTGGATCATATTACGTATTTAGGATTTCCGTTTA
CACTGAACTATTTGCAGTGCGAATTCTCTTCCGTGGATGAATCAAGAAGA
AAGGAGCCCGAGCCGTTTCTGAGAAGACACAAGGCGGTGGGAAGCGTGTA
AATGTGCACTGCCCAACCATCACTCAAAGTGACGTCGATTCATTCCCGAA
TCCACGACGGGCACGGTTTCGTTGCCTTCGACGAATCTACCGACACTACA
TACCTGGCCTTTACGGGAACTGACCCTTTGGCCTTGCAGGATTGGTTTGA
CGACCTGAATTTCTTCCCTGAACCCTTTCCAGATTGTGAAGGCTGTTGGG
TGGACCGCGGATTTTACCACACCTACCTGGAGTTACGCGATCAAGTGCTT
GCCATTCTTGCTGCGTACCATCGGGAGTATCCTACCCCGGTCCTGCACCT
GACGGGCCATTCCCTAGGAGGAGCCTTGGCAGTATTTGCGGCTTTGGAAT
TGATCCACACATTGGGACTGCGGGTCAGTACGCTCTACACTTTTGGACAG
CCCCGTATTGGCAATGTTCCTTTTCAGACATTTCTTCAAGCTAGTCTAGA
GGCATCGTCTTGTGCGCATTTTCGGGTGACACACAGTCGGGACCCTGTTC
CTCATTTGCCTCCATCGATCCCTCCGACGCATTCATATGGCTTCCGACAT
GAGCCACAGGAAGTGTATTACCCCGGCGATGACGATGTCTGTGCATTTGT
CGTCTGTGATCCTGAGGAAGGGGAAGACCCCCGCGGGAGCGATCAAAACG
ATTTTCCACTGAATTTTGTGGATCATATTACGTATTTAGGATTTCCGTTT
ACACTGAACTATTTGCAGTGCGAATTCTCTTCCGTGGATGAATCAAGAAG
AAAGGAGCCCGAGCCGTTTCTGAGAAGACACAAGGCGGTGGGAAGCGTGT
AA
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Synonyms
Publications