jgi.p|Nanoce1779_2|594770, mRNA_6370 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594770
Unique Name	mRNA_6370
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3223
Alignment location	scaffold_15:475489..478838 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594856
Track	FilteredModels2
ProteinId	594770

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:475489..478838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594770	gene_6370	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594770	mRNA_6370-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6370	CDS_6370	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:475489..478838+
coding sequence from alignment at scaffold_15:475489..478838+

mRNA sequence

>mRNA_6370 ID=mRNA_6370|Name=jgi.p|Nanoce1779_2|594770|organism=Nannochloropsis oceanica|type=mRNA|length=3223bp
TCGTAGCTATCACCGCACAGTACCCCCACAGCCATTCCCCCTCACAGTAA
TGAAGAAATCACAGCAATAAGTACCACTTGCGTGGGCGTGTCCAATGAGA
GCATGCGGATCATTCTCACGACCTGACGCCCCTGCACATTCCATGCGACC
TCTCCTGTTTCCCGCGGCTGACCCAGGCATGGATCTTCAGCTAGCGTGGG
GAGCAAGACGATTATATGCCTCTACGAGTGATATACCGGCGCTATTTGCC
TGAGGACAAACAAGCATCGTCCTCTCTTATCGGACGCACACGCAGTCATG
ACTTTCTTGCTCACCTCCTCCCACCTTTCTTACCCCACCAAGCCCCCATA
GGCAAGGCACAGCAATGGCGACCAGCTCTGACACAGAGATATGCGGCTTT
ATCGGTCTTGGTCTCATGGGATTAGGGATGGCCAACAATCTGCTGAACAA
ACGAAAGCACCACCTGATCATCTGGAACCGCGACACCAGCAAATCCGTCG
ACCTCGCCGCCGAATTCCCCGGCCGGGTCACCGTGGCGAGCACCCCCAAA
GAAGTTGTGGCCACAGCACAAGTTACTTTTTCGATGCTCTCCACGCTGGA
GGCCTCAACAGCTGTTTTTGAGGGCCCGGAAGGAATGTTGGCGGGCGTAG
GCCCGACTACTTCTATTGTTGATTGCGCGACGCTGACCCCGGAACGAATG
GCCGAGATGGCGGCGCTTGTGGAGGGAAAAGGCGGAATTTTCCTAGAGGC
ACCGGTATCGGGGAGCAAGGCGCCGGCTGAACAGGGGACATTGATTTTTA
TGTGTGCAGGAAATAAAGTGTTGTATGAGCGAGTTAGTGAGGATTTGGAT
GCCATGGGCAAGGCAAAATACTTTTTGGGAACAGTGGGGGCGGCCAGCAG
GATGAAGATTGTGGTTAATATGACCATGGGGGGGATGTTGGCGTGCTTTG
CAGAGGGATTGGGGCTGGCGAAGGCGGCAGATTTGCCCCTGGGCGATTTA
TTGGCTATTTTGGATGGCGGGGCATGTTCTTGTCCCATGTTCCAGTTGAA
GGGACCGAAGATGTTGCAAAGGAAGTATGACACGGCTTTTCCTCTCAAGC
ATGCCCAAAAAGACATGCGGTTTGCGGTTGAGTTGGGAGATAAGCTCGCG
CAGCCGTTGCCGGTGGCGGCGGCGGCGAATGAGGTGTACAAGCGGGCGCG
GAGGCATGGGCATGATGATCACGACTTTAGTGCTGTGGCTGAGGCTTGTA
TGCCGCCGCAAGTGGTGAAGGGGGAGGCAAGCAATGATAAGGCGGTAAAT
GGGAAGAGCGAGCGACCATAAAGTATAATAGGGGGGGGGAAGGAGAAGTG
TAGGAGATTTCGTGGAAAGCCAGGAGGAAGAGAGCGTGCGTAGCTTTTTG
AAAGGGAGGAATATGTGTTTTTAGGGATGGGGAATTGAGGAAAGACTAGT
GTGTCCTGTCCTCATAGTGATAGAGTGTGCCCAAAGTCAATCAAATGGCG
AAGGAAGAACACGATATAAGGGAAGAATAAAGGAAAGAACGACATGTCAC
CGTGAAGTACACCCCGGCGTGCTTAAAGAGCCCTTGCTTTATGCCAAGGA
AGCAAGAGTGAGCAAACCAAACGCCATCATCCCAAGCCTGCCTTCGGCTA
CCCAGCCTTTTTCCAATAATGACTGTCCCGCCAAGGCAACCCGTCGCGGC
AATTGAGGACCCTTAGACCTTGTCAGCGGCAAATATCAGCCCAGCGACCT
CAACTCCTCCAGCTCCGAGACTAAGACCACATCCGAGACGAACACCTGCC
TCCTCGCCGTGAAGCTTGAACAGTAGCAGCAGTAGTAGCAGTGGAAGCGG
CAGCATTCCAGCCAATGCCTTCACATCTGTGCCGCCTGGCAACATTCTCC
TCTTTTCCAACCTCATCTATAACGCTGTCGGAGCGCATAAAATTTACGCT
AGCCACTCTCCACGTACCAGCCACAGATCTACATGCAGCCGCGCAATGCA
GCACTATTTCAAGTTTTGCTTCATTGGACCCATCGGATGATCGTAGCTCT
TACCCTATGGGCACAAAGAAATGCGGCCATTGGGCAATATAGGATCATCA
CTAGTAGAAGCCCATTAGAGCCGCCAGCGCCGACGCCTGCTGGGCCTCAA
AGCCACCAGTACAACGAAACCTTAGCGTACCAACTTGTTGATCTGTGCGG
CTGCACCTACTGCTGCATTCACGGCTGCAACATGTGCACTGCCCAACCAT
CACTCAAAGTGACGTCGATTCATTCCCGAATCCACGACGGGCACGGTTTC
GTTGCCTTCGACGAATCTACCGACACTACATACCTGGCCTTTACGGGAAC
TGACCCTTTGGCCTTGCAGGATTGGTTTGACGACCTGAATTTCTTCCCTG
AACCCTTTCCAGATTGTGAAGGCTGTTGGGTGGACCGCGGATTTTACCAC
ACCTACCTGGAGTTACGCGATCAAGTGCTTGCCATTCTTGCTGCGTACCA
TCGGGAGTATCCTACCCCGGTCCTGCACCTGACGGGCCATTCCCTAGGAG
GAGCCTTGGCAGTATTTGCGGCTTTGGAATTGATCCACACATTGGGACTG
CGGGTCAGTACGCTCTACACTTTTGGACAGCCCCGTATTGGCAATGTTCC
TTTTCAGACATTTCTTCAAGCTAGTCTAGAGGCATCGTCTTGTGCGCATT
TTCGGGTGACACACAGTCGGGACCCTGTTCCTCATTTGCCTCCATCGATC
CCTCCGACGCATTCATATGGCTTCCGACATGAGCCACAGGAAGTGTATTA
CCCGTGTGGGACTGGCCGAGGGGTCGACGGATGGAGCAGCCGCAGCATCA
ATAGTAGCAGCAGCGGCGATGACGATGTCTGTGCATTTGTCGTCTGTGAT
CCTGAGGAAGGGGAAGACCCCCGCGGGAGCGATCAAAACGATTTTCCACT
GAATTTTGTGGATCATATTACGTATTTAGGATTTCCGTTTACACTGAACT
ATTTGCAGTGCGAATTCTCTTCCGTGGATGAATCAAGAAGAAAGGAGCCC
GAGCCGTTTCTGAGAAGACACAAGGCGGTGGGAAGCGTGTAAAAGGTAGA
TTCGGTTGGTAGAGGACGAAAGCTTGTGTTCGTGTGAAGATGGGGAATGG
ACCGAATATCCAGAGAATGCTGAGAAAAGCACGAATGAGAATTCGAAATG
GAAAACATGTATCTGATCGCAAT

protein sequence of jgi.p|Nanoce1779_2|594770

>mRNA_6370-protein ID=mRNA_6370-protein|Name=jgi.p|Nanoce1779_2|594770|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MATSSDTEICGFIGLGLMGLGMANNLLNKRKHHLIIWNRDTSKSVDLAAE
FPGRVTVASTPKEVVATAQVTFSMLSTLEASTAVFEGPEGMLAGVGPTTS
IVDCATLTPERMAEMAALVEGKGGIFLEAPVSGSKAPAEQGTLIFMCAGN
KVLYERVSEDLDAMGKAKYFLGTVGAASRMKIVVNMTMGGMLACFAEGLG
LAKAADLPLGDLLAILDGGACSCPMFQLKGPKMLQRKYDTAFPLKHAQKD
MRFAVELGDKLAQPLPVAAAANEVYKRARRHGHDDHDFSAVAEACMPPQV
VKGEASNDKAVNGKSERP*

mRNA from alignment at scaffold_15:475489..478838+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6370 ID=mRNA_6370|Name=jgi.p|Nanoce1779_2|594770|organism=Nannochloropsis oceanica|type=mRNA|length=3350bp|location=Sequence derived from alignment at scaffold_15:475489..478838+ (Nannochloropsis oceanica)
TCGTAGCTATCACCGCACAGTACCCCCACAGCCATTCCCCCTCACAGTAA
TGAAGAAATCACAGCAATAAGTACCACTTGCGTGGGCGTGTCCAATGAGA
GCATGCGGATCATTCTCACGACCTGACGCCCCTGCACATTCCATGCGACC
TCTCCTGTTTCCCGCGGCTGACCCAGGCATGGATCTTCAGCTAGCGTGGG
GAGCAAGACGATTATATGCCTCTACGAGTGATATACCGGCGCTATTTGCC
TGAGGACAAACAAGCATCGTCCTCTCTTATCGGACGCACACGCAGTCATG
ACTTTCTTGCTCACCTCCTCCCACCTTTCTTACCCCACCAAGCCCCCATA
GGCAAGGCACAGCAATGGCGACCAGCTCTGACACAGAGATATGCGGCTTT
ATCGGTCTTGGTCTCATGGGATTAGGGATGGCCAACAATCTGCTGAACAA
ACGAAAGCACCACCTGATCATCTGGAACCGCGACACCAGCAAATCCGTCG
ACCTCGCCGCCGAATTCCCCGGCCGGGTCACCGTGGCGAGCACCCCCAAA
GAAGTTGTGGCCACAGCACAAGTTACTTTTTCGATGCTCTCCACGCTGGA
GGCCTCAACAGCTGTTTTTGAGGGCCCGGAAGGAATGTTGGCGGGCGTAG
GCCCGACTACTTCTATTGTTGATTGCGCGACGCTGACCCCGGAACGAATG
GCCGAGATGGCGGCGCTTGTGGAGGGAAAAGGCGGAATTTTCCTAGAGGC
ACCGGTATCGGGGAGCAAGGCGCCGGCTGAACAGGGGACATTGATTTTTA
TGTGTGCAGGAAATAAAGTGTTGTATGAGCGAGTTAGTGAGGATTTGGAT
GCCATGGGCAAGGCAAAATACTTTTTGGGAACAGTGGGGGCGGCCAGCAG
GATGAAGATTGTGGTTAATATGACCATGGGGGGGATGTTGGCGTGCTTTG
CAGAGGGATTGGGGCTGGCGAAGGCGGCAGATTTGCCCCTGGGCGATTTA
TTGGCTATTTTGGATGGCGGGGCATGTTCTTGTCCCATGTTCCAGTTGAA
GGGACCGAAGATGTTGCAAAGGAAGTATGACACGGCTTTTCCTCTCAAGC
ATGCCCAAAAAGACATGCGGTTTGCGGTTGAGTTGGGAGATAAGCTCGCG
CAGCCGTTGCCGGTGGCGGCGGCGGCGAATGAGGTGTACAAGCGGGCGCG
GAGGCATGGGCATGATGATCACGACTTTAGTGCTGTGGCTGAGGCTTGTA
TGCCGCCGCAAGTGGTGAAGGGGGAGGCAAGCAATGATAAGGCGGTAAAT
GGGAAGAGCGAGCGACCATAAAGTATAATAGGGGGGGGGAAGGAGAAGTG
TAGGAGATTTCGTGGAAAGCCAGGAGGAAGAGAGCGTGCGTAGCTTTTTG
AAAGGGAGGAATATGTGTTTTTAGGGATGGGGAATTGAGGAAAGACTAGT
GTGTCCTGTCCTCATAGTGATAGAGTGTGCCCAAAGTCAATCAAATGGCG
AAGGAAGAACACGATATAAGGGAAGAATAAAGGAAAGAACGACATGTCAC
CGTGAAGTACACCCCGGCGTGCTTAAAGAGCCCTTGCTTTATGCCAAGGA
AGCAAGAGTGAGCAAACCAAACGCCATCATCCCAAGCCTGCCTTCGGCTA
CCCAGCCTTTTTCCAATAATGACTGTCCCGCCAAGGCAACCCGTCGCGGC
AATTGAGGACCCTTAGACCTTGTCAGCGGCAAATATCAGCCCAGCGACCT
CAACTCCTCCAGCTCCGAGACTAAGACCACATCCGAGACGAACACCTGCC
TCCTCGCCGTGAAGCTTGAACAGTAGCAGCAGTAGTAGCAGTGGAAGCGG
CAGCATTCCAGCCAATGCCTTCACATCTGTGCCGCCTGGCAACATTCTCC
TCTTTTCCAACCTCATCTATAACGCTGTCGGAGCGCATAAAATTTACGCT
AGCCACTCTCCACGTACCAGCCACAGATCTACATGCAGCCGCGCAATGCA
GCACTATTTCAAGTTTTGCTTCATTGGACCCATCGGATGATCGTAGCTCT
TACCCTATGGGCACAAAGAAATGCGGCCATTGGGCAATATAGGATCATCA
CTAGTAGAAGCCCATTAGAGCCGCCAGCGCCGACGCCTGCTGGGCCTCAA
AGCCACCAGTACAACGAAACCTTAGCGTACCAACTTGTTGATCTGTGCGG
TAGGTCATCCTTTCTTACCTCCGTTATCATCTCCAAGTGTCCTCTTACGC
GAATTTCGGCGTGGAGGTATATCACATTTCTTATGTTCCACCTCGTGCTC
CCCCTACCTCATTACTCCGTGTACAGGCTGCACCTACTGCTGCATTCACG
GCTGCAACATGTGCACTGCCCAACCATCACTCAAAGTGACGTCGATTCAT
TCCCGAATCCACGACGGGCACGGTTTCGTTGCCTTCGACGAATCTACCGA
CACTACATACCTGGCCTTTACGGGAACTGACCCTTTGGCCTTGCAGGATT
GGTTTGACGACCTGAATTTCTTCCCTGAACCCTTTCCAGATTGTGAAGGC
TGTTGGGTGGACCGCGGATTTTACCACACCTACCTGGAGTTACGCGATCA
AGTGCTTGCCATTCTTGCTGCGTACCATCGGGAGTATCCTACCCCGGTCC
TGCACCTGACGGGCCATTCCCTAGGAGGAGCCTTGGCAGTATTTGCGGCT
TTGGAATTGATCCACACATTGGGACTGCGGGTCAGTACGCTCTACACTTT
TGGACAGCCCCGTATTGGCAATGTTCCTTTTCAGACATTTCTTCAAGCTA
GTCTAGAGGCATCGTCTTGTGCGCATTTTCGGGTGACACACAGTCGGGAC
CCTGTTCCTCATTTGCCTCCATCGATCCCTCCGACGCATTCATATGGCTT
CCGACATGAGCCACAGGAAGTGTATTACCCGTGTGGGACTGGCCGAGGGG
TCGACGGATGGAGCAGCCGCAGCATCAATAGTAGCAGCAGCGGCGATGAC
GATGTCTGTGCATTTGTCGTCTGTGATCCTGAGGAAGGGGAAGACCCCCG
CGGGAGCGATCAAAACGATTTTCCACTGAATTTTGTGGATCATATTACGT
ATTTAGGATTTCCGTTTACACTGAACTATTTGCAGTGCGAATTCTCTTCC
GTGGATGAATCAAGAAGAAAGGAGCCCGAGCCGTTTCTGAGAAGACACAA
GGCGGTGGGAAGCGTGTAAAAGGTAGATTCGGTTGGTAGAGGACGAAAGC
TTGTGTTCGTGTGAAGATGGGGAATGGACCGAATATCCAGAGAATGCTGA
GAAAAGCACGAATGAGAATTCGAAATGGAAAACATGTATCTGATCGCAAT

Coding sequence (CDS) from alignment at scaffold_15:475489..478838+

>mRNA_6370 ID=mRNA_6370|Name=jgi.p|Nanoce1779_2|594770|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_15:475489..478838+ (Nannochloropsis oceanica)
ATGGCGACCAGCTCTGACACAGAGATATGCGGCTTTATCGGTCTTGGTCT
CATGGGATTAGGGATGGCCAACAATCTGCTGAACAAACGAAAGCACCACC
TGATCATCTGGAACCGCGACACCAGCAAATCCGTCGACCTCGCCGCCGAA
TTCCCCGGCCGGGTCACCGTGGCGAGCACCCCCAAAGAAGTTGTGGCCAC
AGCACAAGTTACTTTTTCGATGCTCTCCACGCTGGAGGCCTCAACAGCTG
TTTTTGAGGGCCCGGAAGGAATGTTGGCGGGCGTAGGCCCGACTACTTCT
ATTGTTGATTGCGCGACGCTGACCCCGGAACGAATGGCCGAGATGGCGGC
GCTTGTGGAGGGAAAAGGCGGAATTTTCCTAGAGGCACCGGTATCGGGGA
GCAAGGCGCCGGCTGAACAGGGGACATTGATTTTTATGTGTGCAGGAAAT
AAAGTGTTGTATGAGCGAGTTAGTGAGGATTTGGATGCCATGGGCAAGGC
AAAATACTTTTTGGGAACAGTGGGGGCGGCCAGCAGGATGAAGATTGTGG
TTAATATGACCATGGGGGGGATGTTGGCGTGCTTTGCAGAGGGATTGGGG
CTGGCGAAGGCGGCAGATTTGCCCCTGGGCGATTTATTGGCTATTTTGGA
TGGCGGGGCATGTTCTTGTCCCATGTTCCAGTTGAAGGGACCGAAGATGT
TGCAAAGGAAGTATGACACGGCTTTTCCTCTCAAGCATGCCCAAAAAGAC
ATGCGGTTTGCGGTTGAGTTGGGAGATAAGCTCGCGCAGCCGTTGCCGGT
GGCGGCGGCGGCGAATGAGGTGTACAAGCGGGCGCGGAGGCATGGGCATG
ATGATCACGACTTTAGTGCTGTGGCTGAGGCTTGTATGCCGCCGCAAGTG
GTGAAGGGGGAGGCAAGCAATGATAAGGCGGTAAATGGGAAGAGCGAGCG
ACCATAA

Synonyms

Publications