jgi.p|Nanoce1779_2|573600, mRNA_637 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573600
Unique Name	mRNA_637
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1423
Alignment location	scaffold_2:65527..67453 +

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Properties


Property Name	Value
TranscriptId	573686
Track	FilteredModels2
ProteinId	573600

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:65527..67453 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573600	gene_637	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573600	mRNA_637-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_637	CDS_637	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:65527..67453+
coding sequence from alignment at scaffold_2:65527..67453+

mRNA sequence

>mRNA_637 ID=mRNA_637|Name=jgi.p|Nanoce1779_2|573600|organism=Nannochloropsis oceanica|type=mRNA|length=1423bp
CAGACACCACTCGCTACTCACCAAGCCGTAACCATGCGTTCCCAGCTCTC
CGTGCTGGTCTTTGCGCTGTTCGGCGCTGTCGGGGTGGAGGGCCATGCGC
GTTGGAAGTGCCCACCCCCGCGTGATGAGAATGATGCCAATGGCAACCAC
ATCGCCTTCGACAACACAGGTAACAAGTACGGTCCCTGTGGACCGTTCTC
AGGCATGTATGGGATGAACGGCGTGCGTGCCCTCAAGCCCGGCCCTCTTA
CCGTGACCTGGGAGGAAAGCATCGCCCATGTCGGCTCGCCCTTCCGCCTG
GCCATCTTGGATGAGAACGAGGAAGTGAAGGTAGTCCTCGCCGATCACAT
CCCTCACAACGACGCTGCTAAATCCTCCTTCATCGAACGTACCTACACTC
CCTACCACCTGACGGTGGACATCCCGGACGTCAGGTGCGAGAAATGCACG
CTGCAACTCATCTACTTTATGACCGACAAGACCGTGAAATGCGGCTCTCT
TCAGTGTACCTACCATGCCGACGACTCTGCCTGCAGCGGACAGATCGATG
CGGCGGCACCCACGTGTTTCGGGGCCCCTAATGACGTGCCTTGCAGGGAG
AAGGACACGTGTTTCTCCAACTACCACACTTGTACTGACGTCAGCATCGC
CGGCGCCCGGGCCTTCGAGGAGTTTGAGTTGGATTCACAGCCCCTGGACT
GGCCGTATAAGAACCTGACAATGAGTGTATACGGCGCCGAGGAGGCGGAG
TGGGAGGGAGGGTGGTTGAAGGACGTGCCGAAGCGCTTCACGCACCTGGC
GGACTTCGTGGAGTGCTGAAGAGGGGTTAGGAGGAGGGAGAGGTAGTTTC
CCGGCGGGAGGTGGGAAAGGCCTGATATATGTATATGAAGGCGCAAGCGT
TGCGGTTCTGGGAAAGCTAGGAGAGTATGATGTATAGTGTGCAGCAAGAG
GAGGGGGGGAGAGAGGGGCCCTACAGATGGAGGCAAAAGACGCTATGAAA
CCCACTTCGACGAACGACAATGAAAGGTGCAGACAGCAGAAAGGGAAAAA
AATATGTGGATGATGAGCGATACAGCGATATTCCTCTCTGTCTCATCTTC
CCTCCCTCTCAACCTCTCCCTTCACACGGGAAAGCACCGCTTTTGCTTTC
TCTTCTTTCCTCGGTGTTTTATTTATCACATCTATACATCACACGTTTCA
CAGGTCTTGGATGATGGAGGCGCTGGGCATTTGCGGGCGTTTGCCTTGTT
CCAATATCGACAATTGTTTTCGTTCAAAGAGCCCGTGAACTTCGAGGGTC
CTCAAACCCCGTCCTCTACACTCCCTGACGCTCTTCCTCGTCCTCCTCCC
CTCCCTCTCCATCCTCGTCCTCCTCTTCGTCCTCCTCTTCGTCCTCCTCT
TCGTCCTCCTCTTCGTCCTCTTC

protein sequence of jgi.p|Nanoce1779_2|573600

>mRNA_637-protein ID=mRNA_637-protein|Name=jgi.p|Nanoce1779_2|573600|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRSQLSVLVFALFGAVGVEGHARWKCPPPRDENDANGNHIAFDNTGNKYG
PCGPFSGMYGMNGVRALKPGPLTVTWEESIAHVGSPFRLAILDENEEVKV
VLADHIPHNDAAKSSFIERTYTPYHLTVDIPDVRCEKCTLQLIYFMTDKT
VKCGSLQCTYHADDSACSGQIDAAAPTCFGAPNDVPCREKDTCFSNYHTC
TDVSIAGARAFEEFELDSQPLDWPYKNLTMSVYGAEEAEWEGGWLKDVPK
RFTHLADFVEC*

mRNA from alignment at scaffold_2:65527..67453+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_637 ID=mRNA_637|Name=jgi.p|Nanoce1779_2|573600|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp|location=Sequence derived from alignment at scaffold_2:65527..67453+ (Nannochloropsis oceanica)
CAGACACCACTCGCTACTCACCAAGCCGTAACCATGCGTTCCCAGCTCTC
CGTGCTGGTCTTTGCGCTGTTCGGCGCTGTCGGGGTGGAGGGCCATGCGC
GTTGGAAGTGCCCACCCCCGCGTGATGAGAATGATGCCAATGGTAAGACT
TTGAACAGTGTCTTCGAAAGTTGATTTGCGTCTCTCGATGTTGGGCTACT
ATCCGCGTGCAGTGTGCTGGGCAATGGAAGCAGCGGGGAAGGGGCTTAAA
TACCTGACTCAATGCCTTCAACAGGGTTGCCGTTGTCTTGTCCATATAAA
TGAGCCCTCCGGTGGTTACTCCGTGCGACATGGCTTTCGTTCCTCCCTCG
CATTGTCATAAGAAATAATCCCCGCGCATTCCCTTTTCCTTGCTCGCATT
CTCTTCTCCTTGCTCTCTTCGTCGTTCCCTCCCCATTCCCTCCCCCCCCT
CCCCCCTCCTCCCTCCCCCTTTCCCCAACCAACAGGCAACCACATCGCCT
TCGACAACACAGGTAACAAGTACGGTCCCTGTGGACCGTTCTCAGGCATG
TATGGGATGAACGGCGTGCGTGCCCTCAAGCCCGGCCCTCTTACCGTGAC
CTGGGAGGAAAGCATCGCCCATGTCGGCTCGCCCTTCCGCCTGGCCATCT
TGGATGAGAACGAGGAAGTGAAGGTAGTCCTCGCCGATCACATCCCTCAC
AACGACGCTGCTAAATCCTCCTTCATCGAACGTACCTACACTCCCTACCA
CCTGACGGTGGACATCCCGGACGTCAGGTGCGAGAAATGCACGCTGCAAC
TCATCTACTTTATGACCGACAAGACCGTGAAATGCGGCTCTCTTCAGTGT
ACCTACCATGCCGACGACTCTGCCTGCAGCGGACAGATCGATGCGGCGGC
ACCCACGTGTTTCGGGGCCCCTAATGACGTGCCTTGCAGGGAGAAGGACA
CGTGTTTCTCCAACTACCACACTTGTACTGACGTCAGCATCGCCGGCGCC
CGGGCCTTCGAGGAGTTTGAGTTGGATTCACAGGTAGGAAGGGCGGGAGG
GAAGGAAGGAGGGAAAATTCGTGATAAGGTGAAAAACAAGTGATGTGTGC
AATGTTGGGGCCCCAAAAAATATTTCTACCCGTGAGTTTTCCCACCCTCT
GCTCTCTTCTCCCAATTCACTCCCTCCCTCCCTCCCTCCTTCAGCCCCTG
GACTGGCCGTATAAGAACCTGACAATGAGTGTATACGGCGCCGAGGAGGC
GGAGTGGGAGGGAGGGTGGTTGAAGGACGTGCCGAAGCGCTTCACGCACC
TGGCGGACTTCGTGGAGTGCTGAAGAGGGGTTAGGAGGAGGGAGAGGTAG
TTTCCCGGCGGGAGGTGGGAAAGGCCTGATATATGTATATGAAGGCGCAA
GCGTTGCGGTTCTGGGAAAGCTAGGAGAGTATGATGTATAGTGTGCAGCA
AGAGGAGGGGGGGAGAGAGGGGCCCTACAGATGGAGGCAAAAGACGCTAT
GAAACCCACTTCGACGAACGACAATGAAAGGTGCAGACAGCAGAAAGGGA
AAAAAATATGTGGATGATGAGCGATACAGCGATATTCCTCTCTGTCTCAT
CTTCCCTCCCTCTCAACCTCTCCCTTCACACGGGAAAGCACCGCTTTTGC
TTTCTCTTCTTTCCTCGGTGTTTTATTTATCACATCTATACATCACACGT
TTCACAGGTCTTGGATGATGGAGGCGCTGGGCATTTGCGGGCGTTTGCCT
TGTTCCAATATCGACAATTGTTTTCGTTCAAAGAGCCCGTGAACTTCGAG
GGTCCTCAAACCCCGTCCTCTACACTCCCTGACGCTCTTCCTCGTCCTCC
TCCCCTCCCTCTCCATCCTCGTCCTCCTCTTCGTCCTCCTCTTCGTCCTC
CTCTTCGTCCTCCTCTTCGTCCTCTTC

Coding sequence (CDS) from alignment at scaffold_2:65527..67453+

>mRNA_637 ID=mRNA_637|Name=jgi.p|Nanoce1779_2|573600|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_2:65527..67453+ (Nannochloropsis oceanica)
ATGCGTTCCCAGCTCTCCGTGCTGGTCTTTGCGCTGTTCGGCGCTGTCGG
GGTGGAGGGCCATGCGCGTTGGAAGTGCCCACCCCCGCGTGATGAGAATG
ATGCCAATGGCAACCACATCGCCTTCGACAACACAGGTAACAAGTACGGT
CCCTGTGGACCGTTCTCAGGCATGTATGGGATGAACGGCGTGCGTGCCCT
CAAGCCCGGCCCTCTTACCGTGACCTGGGAGGAAAGCATCGCCCATGTCG
GCTCGCCCTTCCGCCTGGCCATCTTGGATGAGAACGAGGAAGTGAAGGTA
GTCCTCGCCGATCACATCCCTCACAACGACGCTGCTAAATCCTCCTTCAT
CGAACGTACCTACACTCCCTACCACCTGACGGTGGACATCCCGGACGTCA
GGTGCGAGAAATGCACGCTGCAACTCATCTACTTTATGACCGACAAGACC
GTGAAATGCGGCTCTCTTCAGTGTACCTACCATGCCGACGACTCTGCCTG
CAGCGGACAGATCGATGCGGCGGCACCCACGTGTTTCGGGGCCCCTAATG
ACGTGCCTTGCAGGGAGAAGGACACGTGTTTCTCCAACTACCACACTTGT
ACTGACGTCAGCATCGCCGGCGCCCGGGCCTTCGAGGAGTTTGAGTTGGA
TTCACAGCCCCTGGACTGGCCGTATAAGAACCTGACAATGAGTGTATACG
GCGCCGAGGAGGCGGAGTGGGAGGGAGGGTGGTTGAAGGACGTGCCGAAG
CGCTTCACGCACCTGGCGGACTTCGTGGAGTGCTGAATGCGTTCCCAGCT
CTCCGTGCTGGTCTTTGCGCTGTTCGGCGCTGTCGGGGTGGAGGGCCATG
CGCGTTGGAAGTGCCCACCCCCGCGTGATGAGAATGATGCCAATGGCAAC
CACATCGCCTTCGACAACACAGGTAACAAGTACGGTCCCTGTGGACCGTT
CTCAGGCATGTATGGGATGAACGGCGTGCGTGCCCTCAAGCCCGGCCCTC
TTACCGTGACCTGGGAGGAAAGCATCGCCCATGTCGGCTCGCCCTTCCGC
CTGGCCATCTTGGATGAGAACGAGGAAGTGAAGGTAGTCCTCGCCGATCA
CATCCCTCACAACGACGCTGCTAAATCCTCCTTCATCGAACGTACCTACA
CTCCCTACCACCTGACGGTGGACATCCCGGACGTCAGGTGCGAGAAATGC
ACGCTGCAACTCATCTACTTTATGACCGACAAGACCGTGAAATGCGGCTC
TCTTCAGTGTACCTACCATGCCGACGACTCTGCCTGCAGCGGACAGATCG
ATGCGGCGGCACCCACGTGTTTCGGGGCCCCTAATGACGTGCCTTGCAGG
GAGAAGGACACGTGTTTCTCCAACTACCACACTTGTACTGACGTCAGCAT
CGCCGGCGCCCGGGCCTTCGAGGAGTTTGAGTTGGATTCACAGCCCCTGG
ACTGGCCGTATAAGAACCTGACAATGAGTGTATACGGCGCCGAGGAGGCG
GAGTGGGAGGGAGGGTGGTTGAAGGACGTGCCGAAGCGCTTCACGCACCT
GGCGGACTTCGTGGAGTGCTGAATGCGTTCCCAGCTCTCCGTGCTGGTCT
TTGCGCTGTTCGGCGCTGTCGGGGTGGAGGGCCATGCGCGTTGGAAGTGC
CCACCCCCGCGTGATGAGAATGATGCCAATGGCAACCACATCGCCTTCGA
CAACACAGGTAACAAGTACGGTCCCTGTGGACCGTTCTCAGGCATGTATG
GGATGAACGGCGTGCGTGCCCTCAAGCCCGGCCCTCTTACCGTGACCTGG
GAGGAAAGCATCGCCCATGTCGGCTCGCCCTTCCGCCTGGCCATCTTGGA
TGAGAACGAGGAAGTGAAGGTAGTCCTCGCCGATCACATCCCTCACAACG
ACGCTGCTAAATCCTCCTTCATCGAACGTACCTACACTCCCTACCACCTG
ACGGTGGACATCCCGGACGTCAGGTGCGAGAAATGCACGCTGCAACTCAT
CTACTTTATGACCGACAAGACCGTGAAATGCGGCTCTCTTCAGTGTACCT
ACCATGCCGACGACTCTGCCTGCAGCGGACAGATCGATGCGGCGGCACCC
ACGTGTTTCGGGGCCCCTAATGACGTGCCTTGCAGGGAGAAGGACACGTG
TTTCTCCAACTACCACACTTGTACTGACGTCAGCATCGCCGGCGCCCGGG
CCTTCGAGGAGTTTGAGTTGGATTCACAGCCCCTGGACTGGCCGTATAAG
AACCTGACAATGAGTGTATACGGCGCCGAGGAGGCGGAGTGGGAGGGAGG
GTGGTTGAAGGACGTGCCGAAGCGCTTCACGCACCTGGCGGACTTCGTGG
AGTGCTGA

Synonyms

Publications