jgi.p|Nanoce1779_2|594760, mRNA_6368 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594760
Unique Name	mRNA_6368
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1538
Alignment location	scaffold_15:467065..468935 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594846
Track	FilteredModels2
ProteinId	594760

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:467065..468935 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594760	gene_6368	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594760	mRNA_6368-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6368	CDS_6368	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:467065..468935+
coding sequence from alignment at scaffold_15:467065..468935+

mRNA sequence

>mRNA_6368 ID=mRNA_6368|Name=jgi.p|Nanoce1779_2|594760|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp
ACAGGACCGAACGATCAGTCAGAGAAGGAGAAGAAGAAGATGCGCGCGGT
GATACTGTTGGTGGCGGCTTTTGTGCTGGTGACCGTGGGAAAGGTGAGTC
TTGAATGAAATGGTGGCAAAGGGAAGTGCATATCACGAAGGAAGGATACT
ATGGAAGGATGCATCATGCACCATATAGCAGCAGGAGCAGCAGGAAAAGG
AGCAGCAGCAGCAGCAGCCACGACAATGGTGGATCGAACCAGCGAGGGTA
GAGGACTAAAACAAGAGAAATAGCGGCTCCATGAAGAGAGCACAGAAGCT
GCGGCCGTTGTGTGCTTGTTCCCCATCTTCCGCCGTGTACATGTCTCCTC
AATCGCCTTGCCCCGCCTTTCCCATCCCACGCACACAGGCGTTTATCACA
CCTGCCGCTCGATTCAACCCTGTCTCTTCCAGCGTAGCTTCGTCCAAGAA
GACGGTGATGATGTCGTCGCCGGACCTCTGGTACCCTGGCATGAAGTGGG
ACGGACGGGGCCTCCGCATGTCTCCTGATCAAGAACCTGAGGTTGACCCC
CGGCGCAAGGAAGAGCCAAAACCGGAGCGGTTTCCCGTGCGTCTTCCGGT
GATTGAAACTCAGACAGGGCAAATCGATGTCTTATCTCGTTTGCTAAAGG
ATCGGATTTTGTTGTTGGGCCAGCAGGTGGACGACGAGGTAGCCAATATC
TTGGTGGCCCAGTTGTTGTATCTCGCTCAGGAGGATAAAGAGAAGGATAT
TACTCTGTACATCAACTCTCCGGGAGGCTCGGTCTCGGCTGGACTTGCGA
TTTACGACGCGATGCAATTCGTCCCGTGTGATGTAGCCACTGTCTGCTTT
GGCATGGCTGCGTCGATGGGTGCTTTTTTGCTCGGCGCAGGGGCGAAGGG
GAAGAGAAGGTCTTTGCCCAATGCAAGGATTATGATTCATCAGCCCCTGG
GAGGTGCACAGGGACAGGCAGCAGATATTGAGATTCAGGCTAAAGAGATC
CTCTTTGTCCGATCCTTGCTCAACAGCTACATCAGCGAGTACACTGGTCA
GCCCATCGACAAGATCCAGGAGGATTGCGACCGTGATTTTTTCATGACCC
CCGAGGAGGCGGTGGCATATGGAATGATTGACTCGATTGTGACGACCAAG
ACAAGTCATTTGAAGAAACCAACGATGCCCGCACTTTTATGGTAAGTAGC
AGCAACCGCATCAGGAGCAGGAGCGGGAGAAGGGGAAATGGCGTGCTTCT
GTTGCTGATCCTTGGGGTGTTGAGGAAGATGAGAAAGGGTAGATAAAGCC
TGAAGGGTAGACAGTCGTGACCTCTTTTCGTGGAGGAGGAAATGGAAAGG
AGGAATGAGAATGGTGACCAAATTTAGTCGGGGGAAAGAAGGTGGAAGTG
ACAGCGATAACGACGAGGTAGAAACCAAACAACGAAAAAGGAAATAAGAG
ATGAGTGAGGATAATTAAAAAAAAGGAAGGATGAAGATACAAGAGGGAAA
TACTAAAAGGAGCAAAACAGGACGCTATCATCTGCTTA

protein sequence of jgi.p|Nanoce1779_2|594760

>mRNA_6368-protein ID=mRNA_6368-protein|Name=jgi.p|Nanoce1779_2|594760|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MKRAQKLRPLCACSPSSAVYMSPQSPCPAFPIPRTQAFITPAARFNPVSS
SVASSKKTVMMSSPDLWYPGMKWDGRGLRMSPDQEPEVDPRRKEEPKPER
FPVRLPVIETQTGQIDVLSRLLKDRILLLGQQVDDEVANILVAQLLYLAQ
EDKEKDITLYINSPGGSVSAGLAIYDAMQFVPCDVATVCFGMAASMGAFL
LGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSY
ISEYTGQPIDKIQEDCDRDFFMTPEEAVAYGMIDSIVTTKTSHLKKPTMP
ALLW*

mRNA from alignment at scaffold_15:467065..468935+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6368 ID=mRNA_6368|Name=jgi.p|Nanoce1779_2|594760|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp|location=Sequence derived from alignment at scaffold_15:467065..468935+ (Nannochloropsis oceanica)
ACAGGACCGAACGATCAGTCAGAGAAGGAGAAGAAGAAGATGCGCGCGGT
GATACTGTTGGTGGCGGCTTTTGTGCTGGTGACCGTGGGAAAGGTGAGTC
TTGAATGAAATGGTGGCAAAGGGAAGTGCATATCACGAAGGAAGGATACT
ATGGAAGGATGCATCATGCACCATATAGCAGCAGGAGCAGCAGGAAAAGG
AGCAGCAGCAGCAGCAGCCACGACAATGGTGGATCGAACCAGCGAGGGTA
GAGGACTAAAACAAGAGAAATAGCGGCTCCATGAAGAGAGCACAGAAGCT
GCGGCCGTTGTGTGCTTGTTCCCCATCTTCCGCCGTGTACATGTCTCCTC
AATCGCCTTGCCCCGCCTTTCCCATCCCACGCACACAGGCGTTTATCACA
CCTGCCGCTCGATTCAACCCTGTCTCTTCCAGCGTAGCTTCGTCCAAGAA
GACGGTGATGATGTCGTCGCCGGACCTCTGGTAGGTGGAATAATGGTCGT
CAGGAAGGGGTGAAGACCTTGGTCTCATTTTGTCCTTTTTTCATCGGTCG
TTTGACGCGCTACTTTATGAGGTGATTTTGTCTCTCTCTCTCTGCCGCAC
TGCACCACAAGGAAGGGATCCCTCTTAGGCCATTTCCCTCTTCTCCTTTG
CATAGGTACCCTGGCATGAAGTGGGACGGACGGGGCCTCCGCATGTCTCC
TGATCAAGAACCTGAGGTTGACCCCCGGCGCAAGGAAGAGCCAAAACCGG
AGCGGTTTCCCGTGCGTCTTCCGGTGATTGAAACTCAGACAGGGCAAATC
GATGTCTTATCTCGTTTGCTAAAGGATCGGATTTTGTTGTTGGGCCAGCA
GGTGGACGACGAGGTAGCCAATATCTTGGTGGCCCAGTTGTTGTATCTCG
CTCAGGAGGATAAAGAGAAGGATATTACTCTGTACATCAACTCTCCGGGA
GGCTCGGTCTCGGCTGGACTTGCGATTTACGACGCGATGCAATTCGTCCC
GTGTGATGTAGCCACTGTCTGCTTTGGCATGGCTGCGTCGATGGGTGCTT
TTTTGCTCGGCGCAGGGGCGAAGGGGAAGAGAAGGTCTTTGCCCAATGCA
AGGATTATGATTCATCAGCCCCTGGGAGGTGCACAGGGACAGGCAGCAGA
TATTGAGATTCAGGTGGGTTTCACGGAATGGAGAAAATGAGGAAGAGCAA
GGGTTGAGAGTACGTGTTTGTGTGCTTTGTTGGTTTGGTCGCATTCATGG
GGCATGTTTTCGATGTTGAAATAGTCACGAGTCACACTCCTCCCTCCTCT
CTTTCCCTCCTTCATCGACAGGCTAAAGAGATCCTCTTTGTCCGATCCTT
GCTCAACAGCTACATCAGCGAGTACACTGGTCAGCCCATCGACAAGATCC
AGGAGGATTGCGACCGTGATTTTTTCATGACCCCCGAGGAGGCGGTGGCA
TATGGAATGATTGACTCGATTGTGACGACCAAGACAAGTCATTTGAAGAA
ACCAACGATGCCCGCACTTTTATGGTAAGTAGCAGCAACCGCATCAGGAG
CAGGAGCGGGAGAAGGGGAAATGGCGTGCTTCTGTTGCTGATCCTTGGGG
TGTTGAGGAAGATGAGAAAGGGTAGATAAAGCCTGAAGGGTAGACAGTCG
TGACCTCTTTTCGTGGAGGAGGAAATGGAAAGGAGGAATGAGAATGGTGA
CCAAATTTAGTCGGGGGAAAGAAGGTGGAAGTGACAGCGATAACGACGAG
GTAGAAACCAAACAACGAAAAAGGAAATAAGAGATGAGTGAGGATAATTA
AAAAAAAGGAAGGATGAAGATACAAGAGGGAAATACTAAAAGGAGCAAAA
CAGGACGCTATCATCTGCTTA

Coding sequence (CDS) from alignment at scaffold_15:467065..468935+

>mRNA_6368 ID=mRNA_6368|Name=jgi.p|Nanoce1779_2|594760|organism=Nannochloropsis oceanica|type=CDS|length=2745bp|location=Sequence derived from alignment at scaffold_15:467065..468935+ (Nannochloropsis oceanica)
ATGAAGAGAGCACAGAAGCTGCGGCCGTTGTGTGCTTGTTCCCCATCTTC
CGCCGTGTACATGTCTCCTCAATCGCCTTGCCCCGCCTTTCCCATCCCAC
GCACACAGGCGTTTATCACACCTGCCGCTCGATTCAACCCTGTCTCTTCC
AGCGTAGCTTCGTCCAAGAAGACGGTGATGATGTCGTCGCCGGACCTCTG
GTACCCTGGCATGAAGTGGGACGGACGGGGCCTCCGCATGTCTCCTGATC
AAGAACCTGAGGTTGACCCCCGGCGCAAGGAAGAGCCAAAACCGGAGCGG
TTTCCCGTGCGTCTTCCGGTGATTGAAACTCAGACAGGGCAAATCGATGT
CTTATCTCGTTTGCTAAAGGATCGGATTTTGTTGTTGGGCCAGCAGGTGG
ACGACGAGGTAGCCAATATCTTGGTGGCCCAGTTGTTGTATCTCGCTCAG
GAGGATAAAGAGAAGGATATTACTCTGTACATCAACTCTCCGGGAGGCTC
GGTCTCGGCTGGACTTGCGATTTACGACGCGATGCAATTCGTCCCGTGTG
ATGTAGCCACTGTCTGCTTTGGCATGGCTGCGTCGATGGGTGCTTTTTTG
CTCGGCGCAGGGGCGAAGGGGAAGAGAAGGTCTTTGCCCAATGCAAGGAT
TATGATTCATCAGCCCCTGGGAGGTGCACAGGGACAGGCAGCAGATATTG
AGATTCAGGCTAAAGAGATCCTCTTTGTCCGATCCTTGCTCAACAGCTAC
ATCAGCGAGTACACTGGTCAGCCCATCGACAAGATCCAGGAGGATTGCGA
CCGTGATTTTTTCATGACCCCCGAGGAGGCGGTGGCATATGGAATGATTG
ACTCGATTGTGACGACCAAGACAAGTCATTTGAAGAAACCAACGATGCCC
GCACTTTTATGGTAAATGAAGAGAGCACAGAAGCTGCGGCCGTTGTGTGC
TTGTTCCCCATCTTCCGCCGTGTACATGTCTCCTCAATCGCCTTGCCCCG
CCTTTCCCATCCCACGCACACAGGCGTTTATCACACCTGCCGCTCGATTC
AACCCTGTCTCTTCCAGCGTAGCTTCGTCCAAGAAGACGGTGATGATGTC
GTCGCCGGACCTCTGGTACCCTGGCATGAAGTGGGACGGACGGGGCCTCC
GCATGTCTCCTGATCAAGAACCTGAGGTTGACCCCCGGCGCAAGGAAGAG
CCAAAACCGGAGCGGTTTCCCGTGCGTCTTCCGGTGATTGAAACTCAGAC
AGGGCAAATCGATGTCTTATCTCGTTTGCTAAAGGATCGGATTTTGTTGT
TGGGCCAGCAGGTGGACGACGAGGTAGCCAATATCTTGGTGGCCCAGTTG
TTGTATCTCGCTCAGGAGGATAAAGAGAAGGATATTACTCTGTACATCAA
CTCTCCGGGAGGCTCGGTCTCGGCTGGACTTGCGATTTACGACGCGATGC
AATTCGTCCCGTGTGATGTAGCCACTGTCTGCTTTGGCATGGCTGCGTCG
ATGGGTGCTTTTTTGCTCGGCGCAGGGGCGAAGGGGAAGAGAAGGTCTTT
GCCCAATGCAAGGATTATGATTCATCAGCCCCTGGGAGGTGCACAGGGAC
AGGCAGCAGATATTGAGATTCAGGCTAAAGAGATCCTCTTTGTCCGATCC
TTGCTCAACAGCTACATCAGCGAGTACACTGGTCAGCCCATCGACAAGAT
CCAGGAGGATTGCGACCGTGATTTTTTCATGACCCCCGAGGAGGCGGTGG
CATATGGAATGATTGACTCGATTGTGACGACCAAGACAAGTCATTTGAAG
AAACCAACGATGCCCGCACTTTTATGGTAAATGAAGAGAGCACAGAAGCT
GCGGCCGTTGTGTGCTTGTTCCCCATCTTCCGCCGTGTACATGTCTCCTC
AATCGCCTTGCCCCGCCTTTCCCATCCCACGCACACAGGCGTTTATCACA
CCTGCCGCTCGATTCAACCCTGTCTCTTCCAGCGTAGCTTCGTCCAAGAA
GACGGTGATGATGTCGTCGCCGGACCTCTGGTACCCTGGCATGAAGTGGG
ACGGACGGGGCCTCCGCATGTCTCCTGATCAAGAACCTGAGGTTGACCCC
CGGCGCAAGGAAGAGCCAAAACCGGAGCGGTTTCCCGTGCGTCTTCCGGT
GATTGAAACTCAGACAGGGCAAATCGATGTCTTATCTCGTTTGCTAAAGG
ATCGGATTTTGTTGTTGGGCCAGCAGGTGGACGACGAGGTAGCCAATATC
TTGGTGGCCCAGTTGTTGTATCTCGCTCAGGAGGATAAAGAGAAGGATAT
TACTCTGTACATCAACTCTCCGGGAGGCTCGGTCTCGGCTGGACTTGCGA
TTTACGACGCGATGCAATTCGTCCCGTGTGATGTAGCCACTGTCTGCTTT
GGCATGGCTGCGTCGATGGGTGCTTTTTTGCTCGGCGCAGGGGCGAAGGG
GAAGAGAAGGTCTTTGCCCAATGCAAGGATTATGATTCATCAGCCCCTGG
GAGGTGCACAGGGACAGGCAGCAGATATTGAGATTCAGGCTAAAGAGATC
CTCTTTGTCCGATCCTTGCTCAACAGCTACATCAGCGAGTACACTGGTCA
GCCCATCGACAAGATCCAGGAGGATTGCGACCGTGATTTTTTCATGACCC
CCGAGGAGGCGGTGGCATATGGAATGATTGACTCGATTGTGACGACCAAG
ACAAGTCATTTGAAGAAACCAACGATGCCCGCACTTTTATGGTAA

Synonyms

Publications