jgi.p|Nanoce1779_2|594757, mRNA_6367 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594757
Unique NamemRNA_6367
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1221
Alignment locationscaffold_15:465226..466702 -

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Properties
Property NameValue
TranscriptId594843
TrackFilteredModels2
ProteinId594757
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:465226..466702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594757gene_6367Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594757mRNA_6367-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6367CDS_6367Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6367 ID=mRNA_6367|Name=jgi.p|Nanoce1779_2|594757|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ACAGATCCTCTCATCGCAGAGATGTGGCGCATTCTGCAGCAAGATTTTTC
CGAGTTTGTTGCCGTGGTGGCCAAGGACAGCAAGGAAGTCCTGTCCGCAG
TCATGCAAGCCCAAGACGAACACGATGACGGCAGCAGCAGCAGCAGTCGT
GGGACTATCACGATCACCGCCACCGGTGGCCTCTCTGCCACGGAGACGGA
CTTGTTGAGGTTGCAGCATGACCCAAGAACCTTTACTGAGGCAGTTAACG
AGGTGGACAAGGAACAATGGGTCTCCTTTGTTGGCGGGCTCGACCTGAGT
AGCAAGGCTACAGAGATGGCCTGCTTGCTCAAGGAAAACAAGGACGTTGC
ACGCATGCACGCCAAGCTTGTCAGAAACGAAGGGAATGAAAATGAGGAGG
GAGATAAAATCGATACAGAGACATTCTGGCTGCGGTATTTTTACAGGCTG
GACCGTTTAGTGCGACAAAAGCGGGGGGTAACCTTGCCTTCGGCCTTAGC
AGAACTACCAGGCCACAGCCAGTCCCGCTTCAGGAAGATGTAGCCGCGGG
GGACCTCAACGCTAATGAAAGTACCAGCACCAACGCTGTTGAGGCAGAGC
TGGCTCGCATGCAGGATGCAATTAGGATATACAAAACACGGACTCACGAA
GTGGAGGTGGACCTTCTGGGATGGAAAAAGAAGTGCGCCATTTTGGAAGG
GCGACTGGAGAAGGCGCAAACCAAGAAAAAGGAAATCACAGCGTTAGCGA
CCGATTCCATCGCGAAGCTTCGAGCCCAGCAAATGGAGCACAAGAAGTTG
CAGCAGCAGCACGAAGAGCTAAAACTGCAGCATGATCAGCTGCAGCAGCA
GTTCCAAGATCGGGAGCAGCAGCATTTGCCACTCTCGCGGTGGCCGCAGC
GGGAAAAGTCACTCACACACATTGACGGGGTGAATGGTATTGAGTGAGAA
GAGGAGGAGGGGGAGGAGCAGAGAGGCGAGGAGCTAGAAGCATGGTCGTG
AGAAAATGTAGATGATTAAAGAGCGAGTACAATCGATATATAGCGATGTA
TGGGAATTCAATATGCCTGGTTGGGTGACCACTTCGCATTTCTTTCGCTG
CTGCTTTTCCTCGTCTCATTCTGGTTGACACAGCCTTCCTCCTTGGGACC
GCAAAGCATGGCCAAATCGTAGCGTTTACAAAAACGCAACACTAAATCAA
AATCACAAAGATCCGAAAAGC
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protein sequence of jgi.p|Nanoce1779_2|594757

>mRNA_6367-protein ID=mRNA_6367-protein|Name=jgi.p|Nanoce1779_2|594757|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MWRILQQDFSEFVAVVAKDSKEVLSAVMQAQDEHDDGSSSSSRGTITITA
TGGLSATETDLLRLQHDPRTFTEAVNEVDKEQWVSFVGGLDLSSKATEMA
CLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRLVRQK
RGVTLPSALAELPGHSQSRFRKM*
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mRNA from alignment at scaffold_15:465226..466702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6367 ID=mRNA_6367|Name=jgi.p|Nanoce1779_2|594757|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp|location=Sequence derived from alignment at scaffold_15:465226..466702- (Nannochloropsis oceanica)
ACAGATCCTCTCATCGCAGAGATGTGGCGCATTCTGCAGCAAGATTTTTC
CGAGTTTGTTGCCGTGGTGGCCAAGGACAGCAAGGAAGTCCTGTCCGCAG
TCATGCAAGCCCAAGACGAACACGATGACGGCAGCAGCAGCAGCAGTCGT
GGGACTATCACGATCACCGCCACCGGTGGCCTCTCTGCCACGGAGACGGA
CTTGTTGAGGTTGCAGCATGACCCAAGAACCTTTACTGAGGCAGTTAACG
AGGTGGACAAGGAACAATGGGTCTCCTTTGTTGGCGGGCTCGACCTGAGT
AGCAAGGCTACAGAGATGGCCTGCTTGCTCAAGGAAAACAAGGACGTTGC
ACGCATGCACGCCAAGCTTGTCAGAAACGAAGGGAATGAAAATGAGGAGG
GAGATAAAATCGATACAGAGACATTCTGGCTGCGGTATTTTTACAGGCTG
GACCGTTTAGTGCGACAAAAGCGGGGGGTAACCTTGCCTTCGGCCTTAGC
AGGTGAGGATGACGAGGAGGAGGATCTGTCGTGGGGAGACGATGAGGACG
AGGACGAAGGGAAGGAGCTGAAGACTGACAAACCGAAGACCAATGAGCAG
ATGGTTGATCCAGTGGTGGCAACGGCAGCAGGAGTTCTTGCCGTCGTTCG
TGCCGAGAAGAAGCATGTGGAAGAGGGACAGCAGGCTGCCTCTACATCCG
TATACAGCTTTCCTTCGAAAATCATTTCTCCTCCACAATTTAATGATCAC
GATGATAGAACTACCAGGCCACAGCCAGTCCCGCTTCAGGAAGATGTAGC
CGCGGGGGACCTCAACGCTAATGAAAGTACCAGCACCAACGCTGTTGAGG
CAGAGCTGGCTCGCATGCAGGATGCAATTAGGATATACAAAACACGGACT
CACGAAGTGGAGGTGGACCTTCTGGGATGGAAAAAGAAGTGCGCCATTTT
GGAAGGGCGACTGGAGAAGGCGCAAACCAAGAAAAAGGAAATCACAGCGT
TAGCGACCGATTCCATCGCGAAGCTTCGAGCCCAGCAAATGGAGCACAAG
AAGTTGCAGCAGCAGCACGAAGAGCTAAAACTGCAGCATGATCAGCTGCA
GCAGCAGTTCCAAGATCGGGAGCAGCAGCATTTGCCACTCTCGCGGTGGC
CGCAGCGGGAAAAGTCACTCACACACATTGACGGGGTGAATGGTATTGAG
TGAGAAGAGGAGGAGGGGGAGGAGCAGAGAGGCGAGGAGCTAGAAGCATG
GTCGTGAGAAAATGTAGATGATTAAAGAGCGAGTACAATCGATATATAGC
GATGTATGGGAATTCAATATGCCTGGTTGGGTGACCACTTCGCATTTCTT
TCGCTGCTGCTTTTCCTCGTCTCATTCTGGTTGACACAGCCTTCCTCCTT
GGGACCGCAAAGCATGGCCAAATCGTAGCGTTTACAAAAACGCAACACTA
AATCAAAATCACAAAGATCCGAAAAGC
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Coding sequence (CDS) from alignment at scaffold_15:465226..466702-

>mRNA_6367 ID=mRNA_6367|Name=jgi.p|Nanoce1779_2|594757|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_15:465226..466702- (Nannochloropsis oceanica)
AACTACCAGGCCACAGCCAGTCCCGCTTCAGGAAGATGTAGATGTGGCGC
ATTCTGCAGCAAGATTTTTCCGAGTTTGTTGCCGTGGTGGCCAAGGACAG
CAAGGAAGTCCTGTCCGCAGTCATGCAAGCCCAAGACGAACACGATGACG
GCAGCAGCAGCAGCAGTCGTGGGACTATCACGATCACCGCCACCGGTGGC
CTCTCTGCCACGGAGACGGACTTGTTGAGGTTGCAGCATGACCCAAGAAC
CTTTACTGAGGCAGTTAACGAGGTGGACAAGGAACAATGGGTCTCCTTTG
TTGGCGGGCTCGACCTGAGTAGCAAGGCTACAGAGATGGCCTGCTTGCTC
AAGGAAAACAAGGACGTTGCACGCATGCACGCCAAGCTTGTCAGAAACGA
AGGGAATGAAAATGAGGAGGGAGATAAAATCGATACAGAGACATTCTGGC
TGCGGTATTTTTACAGGCTGGACCGTTTAGTGCGACAAAAGCGGGGGGTA
ACCTTGCCTTCGGCCTTAGCAGAACTACCAGGCCACAGCCAGTCCCGCTT
CAGGAAGATGTAGATGTGGCGCATTCTGCAGCAAGATTTTTCCGAGTTTG
TTGCCGTGGTGGCCAAGGACAGCAAGGAAGTCCTGTCCGCAGTCATGCAA
GCCCAAGACGAACACGATGACGGCAGCAGCAGCAGCAGTCGTGGGACTAT
CACGATCACCGCCACCGGTGGCCTCTCTGCCACGGAGACGGACTTGTTGA
GGTTGCAGCATGACCCAAGAACCTTTACTGAGGCAGTTAACGAGGTGGAC
AAGGAACAATGGGTCTCCTTTGTTGGCGGGCTCGACCTGAGTAGCAAGGC
TACAGAGATGGCCTGCTTGCTCAAGGAAAACAAGGACGTTGCACGCATGC
ACGCCAAGCTTGTCAGAAACGAAGGGAATGAAAATGAGGAGGGAGATAAA
ATCGATACAGAGACATTCTGGCTGCGGTATTTTTACAGGCTGGACCGTTT
AGTGCGACAAAAGCGGGGGGTAACCTTGCCTTCGGCCTTAGCAG
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Synonyms
Publications