jgi.p|Nanoce1779_2|594755, mRNA_6366 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594755
Unique NamemRNA_6366
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1547
Alignment locationscaffold_15:462846..464392 -

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Properties
Property NameValue
TranscriptId594841
TrackFilteredModels2
ProteinId594755
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:462846..464392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594755gene_6366Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594755mRNA_6366-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6366CDS_6366Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6366 ID=mRNA_6366|Name=jgi.p|Nanoce1779_2|594755|organism=Nannochloropsis oceanica|type=mRNA|length=1547bp
TTCATCACTCCCCAAGGCGTCGCCTTTAAGAAAGAGACCAGCTCTGTCAG
CGCCAAAGCGGCCTCAGAGTGGCATAATTGGGAGGACACCATCGTTTGCC
GTCCTGGTTTTGTTGCCTACCCCTGGACAGTGGAACAGGTGGTAGAGTTG
GTGAAGGCTCATTCCCGCGTTCGGGTCGTGGGGCTGGGCCATAGCTTCAA
CACGCTGACTTGCGGAGAAGACCTGATGATGACCACAATGCAGATGGATA
GAGTGTTAAATTTTGATAAGATCGAGAAAACCGTGACTGTGCAGGCTGGC
GTTAAGACTCGAAACCTGATTCATTGGTTGAGGGATCGGGGGTACGCGCT
GCCTACGGCCCCGTACTATATTGATCAATCAATTGCGGGCGCCGTGGCGA
CCAGCAGCCATGGCAGCTCAGTCATTTTTGGCAGCTTGTCGAGCCTAATT
AAGGCTATAAAGATCGTATTGGCGGATGGGAGTATTCGAGTCTTGACGGA
GGCGGATGGCGATCTGTTTTTGGCGGCTAAAACAAGTGTTGGGACTCTGG
GTGTGGTGATAGAACTAACGTTAGCGGTGCAGCTCAACGAAATTGTGTCG
CGCGGTCTCCATTATATTGACGATGAAGGTATTCTGGCGGAACTCAAAAA
GGCTGAAACCAATGCTTTGGCATTTGAGCGCGTGCATTACTGGTACTCTC
CTCCGTTGAGAGGGGCTGTCAAAACGACGGTGGACGACCTGTCTCACATA
CGTAAGCTCGATGCCAAACCATTTCCGAACGTGGGCGAGTCGGCGTCAGA
CACGTACTACCGGATCATTGCCAATAGTTCGCTCCAACGTGTTTTGTATG
CGCGGACCGCGCAAATGTTGAATGACCCAAACACGCACACAGCGGCAACC
TATGTGATGGTAGGGCACATTGCAAACATTTTGCCGGGCACCTACAAGCT
CTCGGATGCCCTCCCCGCCCAACAAATCCTCGAGACTGATATTCTGCGCT
CAGCCTATGGGAAATATGATCAGTACGAATTTGCCGTGGCGATTGACAAG
GCTCACGATTGCGTCAAGTCTTTGTTTGAAGTATTTGATCGAAACGTCAC
GAATCGCGACGACTTCCGAGTGCCTTTTTGCTTGCGCTACGTAGGGCCTG
GTAAGGAAGGATTGCTAGGCATTTCTCACGGAGGTACACGCTTTTACTTA
AACATGGACAATTACGATGTGTACAACCGCAAGGGCTTCTCGCAATCGAT
GCAGGTGATCAAGGACCTGATGGCATCGCAGACATGCCAAGCTCGGGTGC
ACTACGGCAAGGCCTCAATTTTCTCCCCTATGGGCGGTACTTGGAGTTTG
CTCGATGCCCGTTATGTTCAGAATACTGTGGGCCACGATGTGTATGCACG
CTTTGTGGCTGCGGCCAAAACACTGGACCCAGCGGGTAAGTTTGCTGATG
GGGTGCTGATCTCGAATTGAGCACACACGCGTGAGATCATTATTTTTCAA
TATACAAGGTTTCGGTAAAATGTGATACTTGAAGTAGTTAAAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|594755

>mRNA_6366-protein ID=mRNA_6366-protein|Name=jgi.p|Nanoce1779_2|594755|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MMTTMQMDRVLNFDKIEKTVTVQAGVKTRNLIHWLRDRGYALPTAPYYID
QSIAGAVATSSHGSSVIFGSLSSLIKAIKIVLADGSIRVLTEADGDLFLA
AKTSVGTLGVVIELTLAVQLNEIVSRGLHYIDDEGILAELKKAETNALAF
ERVHYWYSPPLRGAVKTTVDDLSHIRKLDAKPFPNVGESASDTYYRIIAN
SSLQRVLYARTAQMLNDPNTHTAATYVMVGHIANILPGTYKLSDALPAQQ
ILETDILRSAYGKYDQYEFAVAIDKAHDCVKSLFEVFDRNVTNRDDFRVP
FCLRYVGPGKEGLLGISHGGTRFYLNMDNYDVYNRKGFSQSMQVIKDLMA
SQTCQARVHYGKASIFSPMGGTWSLLDARYVQNTVGHDVYARFVAAAKTL
DPAGKFADGVLISN*
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mRNA from alignment at scaffold_15:462846..464392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6366 ID=mRNA_6366|Name=jgi.p|Nanoce1779_2|594755|organism=Nannochloropsis oceanica|type=mRNA|length=1547bp|location=Sequence derived from alignment at scaffold_15:462846..464392- (Nannochloropsis oceanica)
TTCATCACTCCCCAAGGCGTCGCCTTTAAGAAAGAGACCAGCTCTGTCAG
CGCCAAAGCGGCCTCAGAGTGGCATAATTGGGAGGACACCATCGTTTGCC
GTCCTGGTTTTGTTGCCTACCCCTGGACAGTGGAACAGGTGGTAGAGTTG
GTGAAGGCTCATTCCCGCGTTCGGGTCGTGGGGCTGGGCCATAGCTTCAA
CACGCTGACTTGCGGAGAAGACCTGATGATGACCACAATGCAGATGGATA
GAGTGTTAAATTTTGATAAGATCGAGAAAACCGTGACTGTGCAGGCTGGC
GTTAAGACTCGAAACCTGATTCATTGGTTGAGGGATCGGGGGTACGCGCT
GCCTACGGCCCCGTACTATATTGATCAATCAATTGCGGGCGCCGTGGCGA
CCAGCAGCCATGGCAGCTCAGTCATTTTTGGCAGCTTGTCGAGCCTAATT
AAGGCTATAAAGATCGTATTGGCGGATGGGAGTATTCGAGTCTTGACGGA
GGCGGATGGCGATCTGTTTTTGGCGGCTAAAACAAGTGTTGGGACTCTGG
GTGTGGTGATAGAACTAACGTTAGCGGTGCAGCTCAACGAAATTGTGTCG
CGCGGTCTCCATTATATTGACGATGAAGGTATTCTGGCGGAACTCAAAAA
GGCTGAAACCAATGCTTTGGCATTTGAGCGCGTGCATTACTGGTACTCTC
CTCCGTTGAGAGGGGCTGTCAAAACGACGGTGGACGACCTGTCTCACATA
CGTAAGCTCGATGCCAAACCATTTCCGAACGTGGGCGAGTCGGCGTCAGA
CACGTACTACCGGATCATTGCCAATAGTTCGCTCCAACGTGTTTTGTATG
CGCGGACCGCGCAAATGTTGAATGACCCAAACACGCACACAGCGGCAACC
TATGTGATGGTAGGGCACATTGCAAACATTTTGCCGGGCACCTACAAGCT
CTCGGATGCCCTCCCCGCCCAACAAATCCTCGAGACTGATATTCTGCGCT
CAGCCTATGGGAAATATGATCAGTACGAATTTGCCGTGGCGATTGACAAG
GCTCACGATTGCGTCAAGTCTTTGTTTGAAGTATTTGATCGAAACGTCAC
GAATCGCGACGACTTCCGAGTGCCTTTTTGCTTGCGCTACGTAGGGCCTG
GTAAGGAAGGATTGCTAGGCATTTCTCACGGAGGTACACGCTTTTACTTA
AACATGGACAATTACGATGTGTACAACCGCAAGGGCTTCTCGCAATCGAT
GCAGGTGATCAAGGACCTGATGGCATCGCAGACATGCCAAGCTCGGGTGC
ACTACGGCAAGGCCTCAATTTTCTCCCCTATGGGCGGTACTTGGAGTTTG
CTCGATGCCCGTTATGTTCAGAATACTGTGGGCCACGATGTGTATGCACG
CTTTGTGGCTGCGGCCAAAACACTGGACCCAGCGGGTAAGTTTGCTGATG
GGGTGCTGATCTCGAATTGAGCACACACGCGTGAGATCATTATTTTTCAA
TATACAAGGTTTCGGTAAAATGTGATACTTGAAGTAGTTAAAGGAGG
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Coding sequence (CDS) from alignment at scaffold_15:462846..464392-

>mRNA_6366 ID=mRNA_6366|Name=jgi.p|Nanoce1779_2|594755|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at scaffold_15:462846..464392- (Nannochloropsis oceanica)
ATGATGACCACAATGCAGATGGATAGAGTGTTAAATTTTGATAAGATCGA
GAAAACCGTGACTGTGCAGGCTGGCGTTAAGACTCGAAACCTGATTCATT
GGTTGAGGGATCGGGGGTACGCGCTGCCTACGGCCCCGTACTATATTGAT
CAATCAATTGCGGGCGCCGTGGCGACCAGCAGCCATGGCAGCTCAGTCAT
TTTTGGCAGCTTGTCGAGCCTAATTAAGGCTATAAAGATCGTATTGGCGG
ATGGGAGTATTCGAGTCTTGACGGAGGCGGATGGCGATCTGTTTTTGGCG
GCTAAAACAAGTGTTGGGACTCTGGGTGTGGTGATAGAACTAACGTTAGC
GGTGCAGCTCAACGAAATTGTGTCGCGCGGTCTCCATTATATTGACGATG
AAGGTATTCTGGCGGAACTCAAAAAGGCTGAAACCAATGCTTTGGCATTT
GAGCGCGTGCATTACTGGTACTCTCCTCCGTTGAGAGGGGCTGTCAAAAC
GACGGTGGACGACCTGTCTCACATACGTAAGCTCGATGCCAAACCATTTC
CGAACGTGGGCGAGTCGGCGTCAGACACGTACTACCGGATCATTGCCAAT
AGTTCGCTCCAACGTGTTTTGTATGCGCGGACCGCGCAAATGTTGAATGA
CCCAAACACGCACACAGCGGCAACCTATGTGATGGTAGGGCACATTGCAA
ACATTTTGCCGGGCACCTACAAGCTCTCGGATGCCCTCCCCGCCCAACAA
ATCCTCGAGACTGATATTCTGCGCTCAGCCTATGGGAAATATGATCAGTA
CGAATTTGCCGTGGCGATTGACAAGGCTCACGATTGCGTCAAGTCTTTGT
TTGAAGTATTTGATCGAAACGTCACGAATCGCGACGACTTCCGAGTGCCT
TTTTGCTTGCGCTACGTAGGGCCTGGTAAGGAAGGATTGCTAGGCATTTC
TCACGGAGGTACACGCTTTTACTTAAACATGGACAATTACGATGTGTACA
ACCGCAAGGGCTTCTCGCAATCGATGCAGGTGATCAAGGACCTGATGGCA
TCGCAGACATGCCAAGCTCGGGTGCACTACGGCAAGGCCTCAATTTTCTC
CCCTATGGGCGGTACTTGGAGTTTGCTCGATGCCCGTTATGTTCAGAATA
CTGTGGGCCACGATGTGTATGCACGCTTTGTGGCTGCGGCCAAAACACTG
GACCCAGCGGGTAAGTTTGCTGATGGGGTGCTGATCTCGAATTGA
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Synonyms
Publications