jgi.p|Nanoce1779_2|543905, mRNA_6365 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|543905
Unique Name	mRNA_6365
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1575
Alignment location	scaffold_15:461214..462788 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	543991
Track	FilteredModels2
ProteinId	543905

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:461214..462788 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543905	gene_6365	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543905	mRNA_6365-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6365	CDS_6365	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:461214..462788+
coding sequence from alignment at scaffold_15:461214..462788+

mRNA sequence

>mRNA_6365 ID=mRNA_6365|Name=jgi.p|Nanoce1779_2|543905|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
TGGTATTTGTAGTGAACGCACCTGTAAGTTATACAAAAATTCATAAGTGG
GGTTGGGAATGGATTAGGAAGGTTAAGGGTCGTCTCTCACCCATGTTCCC
TCCCTTGCTCCTCCTTTCCCTCAATCTCTCCCTCACACCCTTTAGATCGT
CCTCATCGCCCTTCAAAGCTTCGCGCTACTCGACCTCTTTCTTGTTATGA
ACATTTTGACGACCACCAGGTAGGTGTTTGACGTAGATTAATGTGCCAAA
AAAACTCACACATTTTTTCGTTTCAGCCTGTAATTTAAATCTCCGTGCTG
TCATACTGTGCGACGTCCGTACACCTATTCATCCCTTCTCAGCAGTATTT
CCCCCTCGTTTGCTCCCTCCCTCTCTTGCAGCACTTTTCCTCTACTCTCT
GCCCTCTGGCTCCCACGGGTGTCAGGCAGCACGGTCCTTCTCTCCTCAGC
CGTGAGCTTGTTTTGTACGTGCTTGTTAGGGGTACTTATACAGGGGCAGG
GCATATTAAAAGGATTAATATGGACTTTTACTAGTCAATTGAATCAATAT
GATTGGCGGATTTTTGTGGTGGCGGCCTTCACCTCCGTGGCGTGTACGTT
TGGGTTGTGGTTCGGTAGGGATACAGGAGGGAAGGGGTTCACTGTTCTGT
CGATGGGTGCGTTGGAGGGCTCGATAGGTAATCATTTGTCGCAGCCTTTT
TTCGCTCGATGCTGTCCGCGAGCCTTTTCGATATCATTATCCTTGTCGTC
TTCTTTGTCCGGCACTGCGGCTGCCGCTAGTGATGACGGTGTTGCGTGTG
CTGGTGGAGAGGAAGGGAGTGGGAGCAAGTGGTTGGGTGGGGATAACAAG
TCTCCGCCCTTCCCTTCCTCAACCTCGACGCAAAGGCCAAGACTCAATAC
GACCTGGTGCGTCGGGAAAGCGGACAAAATGCCCGTGGAGAGTGGAAAAG
AGGAAGTGGCATCGTTGGCGGGTTTAATACTTACGTCGCCTCTGGTGGAG
GAGACCGTTGTCGAGAGGGCGGCTAGCATGTTAGCTAATGAGGATGCTCA
TAACGATGGAGAGATGTTTGTGAGATGATGAATGTAAGTGGGGTTTTAAG
ATGGTGACGTTGGCAAGGGGACGGGGAAAGATGGGGTTGGACGAGGTGGA
TGGAGGAAGAGGAGAGTTGGAAAATATTTATCAATCGATAGTGTTGATGA
TTGATATTATTTTGCGGGGGGAAAGAGGAAGAGCTGATACAATAGCTGCT
TGGACAAGCGCCCACCAAAATTGTAATGGGAAGGAGAATGATTAATAAAG
AGGAAATTACGCCACAAATTGAAACGCTAGAATAAGAAAGAGAAACATAT
AAACTATGTGGAATACATGACCGCATGTGTACCACTTCCAGCAGCGCATG
AGGCACATGTGTTGATTTAAAATAAGAAATCTTGAAAGTATAAATCCCGT
GATAGTGTGAACTCACTTCTGTACACCGAAAGTGAGGAATCGTGAGGGGA
ATGACGAGTAAATGACCACAACACCAGCAGCAGTAGGTGATGATAGAGAA
ACAAAGAAACAAAGTGAAGGTGTGC

protein sequence of jgi.p|Nanoce1779_2|543905

>mRNA_6365-protein ID=mRNA_6365-protein|Name=jgi.p|Nanoce1779_2|543905|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MGALEGSIGNHLSQPFFARCCPRAFSISLSLSSSLSGTAAAASDDGVACA
GGEEGSGSKWLGGDNKSPPFPSSTSTQRPRLNTTWCVGKADKMPVESGKE
EVASLAGLILTSPLVEETVVERAASMLANEDAHNDGEMFVR*

mRNA from alignment at scaffold_15:461214..462788+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6365 ID=mRNA_6365|Name=jgi.p|Nanoce1779_2|543905|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp|location=Sequence derived from alignment at scaffold_15:461214..462788+ (Nannochloropsis oceanica)
TGGTATTTGTAGTGAACGCACCTGTAAGTTATACAAAAATTCATAAGTGG
GGTTGGGAATGGATTAGGAAGGTTAAGGGTCGTCTCTCACCCATGTTCCC
TCCCTTGCTCCTCCTTTCCCTCAATCTCTCCCTCACACCCTTTAGATCGT
CCTCATCGCCCTTCAAAGCTTCGCGCTACTCGACCTCTTTCTTGTTATGA
ACATTTTGACGACCACCAGGTAGGTGTTTGACGTAGATTAATGTGCCAAA
AAAACTCACACATTTTTTCGTTTCAGCCTGTAATTTAAATCTCCGTGCTG
TCATACTGTGCGACGTCCGTACACCTATTCATCCCTTCTCAGCAGTATTT
CCCCCTCGTTTGCTCCCTCCCTCTCTTGCAGCACTTTTCCTCTACTCTCT
GCCCTCTGGCTCCCACGGGTGTCAGGCAGCACGGTCCTTCTCTCCTCAGC
CGTGAGCTTGTTTTGTACGTGCTTGTTAGGGGTACTTATACAGGGGCAGG
GCATATTAAAAGGATTAATATGGACTTTTACTAGTCAATTGAATCAATAT
GATTGGCGGATTTTTGTGGTGGCGGCCTTCACCTCCGTGGCGTGTACGTT
TGGGTTGTGGTTCGGTAGGGATACAGGAGGGAAGGGGTTCACTGTTCTGT
CGATGGGTGCGTTGGAGGGCTCGATAGGTAATCATTTGTCGCAGCCTTTT
TTCGCTCGATGCTGTCCGCGAGCCTTTTCGATATCATTATCCTTGTCGTC
TTCTTTGTCCGGCACTGCGGCTGCCGCTAGTGATGACGGTGTTGCGTGTG
CTGGTGGAGAGGAAGGGAGTGGGAGCAAGTGGTTGGGTGGGGATAACAAG
TCTCCGCCCTTCCCTTCCTCAACCTCGACGCAAAGGCCAAGACTCAATAC
GACCTGGTGCGTCGGGAAAGCGGACAAAATGCCCGTGGAGAGTGGAAAAG
AGGAAGTGGCATCGTTGGCGGGTTTAATACTTACGTCGCCTCTGGTGGAG
GAGACCGTTGTCGAGAGGGCGGCTAGCATGTTAGCTAATGAGGATGCTCA
TAACGATGGAGAGATGTTTGTGAGATGATGAATGTAAGTGGGGTTTTAAG
ATGGTGACGTTGGCAAGGGGACGGGGAAAGATGGGGTTGGACGAGGTGGA
TGGAGGAAGAGGAGAGTTGGAAAATATTTATCAATCGATAGTGTTGATGA
TTGATATTATTTTGCGGGGGGAAAGAGGAAGAGCTGATACAATAGCTGCT
TGGACAAGCGCCCACCAAAATTGTAATGGGAAGGAGAATGATTAATAAAG
AGGAAATTACGCCACAAATTGAAACGCTAGAATAAGAAAGAGAAACATAT
AAACTATGTGGAATACATGACCGCATGTGTACCACTTCCAGCAGCGCATG
AGGCACATGTGTTGATTTAAAATAAGAAATCTTGAAAGTATAAATCCCGT
GATAGTGTGAACTCACTTCTGTACACCGAAAGTGAGGAATCGTGAGGGGA
ATGACGAGTAAATGACCACAACACCAGCAGCAGTAGGTGATGATAGAGAA
ACAAAGAAACAAAGTGAAGGTGTGC

Coding sequence (CDS) from alignment at scaffold_15:461214..462788+

>mRNA_6365 ID=mRNA_6365|Name=jgi.p|Nanoce1779_2|543905|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_15:461214..462788+ (Nannochloropsis oceanica)
ATGGGTGCGTTGGAGGGCTCGATAGGTAATCATTTGTCGCAGCCTTTTTT
CGCTCGATGCTGTCCGCGAGCCTTTTCGATATCATTATCCTTGTCGTCTT
CTTTGTCCGGCACTGCGGCTGCCGCTAGTGATGACGGTGTTGCGTGTGCT
GGTGGAGAGGAAGGGAGTGGGAGCAAGTGGTTGGGTGGGGATAACAAGTC
TCCGCCCTTCCCTTCCTCAACCTCGACGCAAAGGCCAAGACTCAATACGA
CCTGGTGCGTCGGGAAAGCGGACAAAATGCCCGTGGAGAGTGGAAAAGAG
GAAGTGGCATCGTTGGCGGGTTTAATACTTACGTCGCCTCTGGTGGAGGA
GACCGTTGTCGAGAGGGCGGCTAGCATGTTAGCTAATGAGGATGCTCATA
ACGATGGAGAGATGTTTGTGAGATGA

Synonyms

Publications