jgi.p|Nanoce1779_2|594749, mRNA_6364 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594749
Unique Name	mRNA_6364
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3086
Alignment location	scaffold_15:459583..462790 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594835
Track	FilteredModels2
ProteinId	594749

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:459583..462790 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594749	gene_6364	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594749	mRNA_6364-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6364	CDS_6364	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:459583..462790+
coding sequence from alignment at scaffold_15:459583..462790+

mRNA sequence

>mRNA_6364 ID=mRNA_6364|Name=jgi.p|Nanoce1779_2|594749|organism=Nannochloropsis oceanica|type=mRNA|length=3086bp
ACAGACGGTACCATTATCAAAAATAACGAAAAAGCATTGGCATTGAGCTG
CAGGGCAGTAAGACCACTGGGCCGCTTGGGCGTGACGGGAACAGCAGACG
GTATGTACTTTGGACATACAACTCACTCCTTCCTCTCTGCTCCATAATCT
TTTCTCCTCGATGATGCACCTGCAACACAATCTTCCCACACAAGCGCACA
CTAATCACAGTAGCGGTACTATCCTTTATGCTACTCGCAGTCTCTTCTTT
GTTACCCAATTACTGCGCTGGCCACGGACACAACACAGGAGGCTCCCTGC
TTCTTGCCTCCCGCTGCCACCGCGCATTCCCCGCCACCCACTCAGCAAGC
TGAATAACGTGCCTTGTCGTCCGAGCCACTCATGAAAAAAGGCTGCGGAC
ATTCATACGCAAAGGCACTTTGTTTTCATTTCTCCTAGGCCCTCCCCCCC
CCCCCCCTTTTTTTTGCGATCCACTAAAGGAAGGAAGTAATAACTTGAAA
TGGCCCGTCCGGTCACAAACTCAAATCCTCCCCGACCTCAACCGCCCGCC
GACCAAACATTCATCATCGCAAGCTATGTATGCGCGATTTTAACCTTATT
CGGATTCGCGGGAGTCGCCGTCATTCTCTCCAGACGACACTATTCTACAG
ATATCGATACCTTCCTCACAGCCCGTCGTTCACAACCCCTCCTTCGGGTG
GCCTGGTCCTTTTTCGCTTCTTCGATTGGGGCGTGGGCGATCTTTCTCCC
TGCTTCGTATCCTGCATTTGGGGGATGGATTTCTATCATAACCTACGCAG
TTTCGACGGGCTTACCTCTTCTTTTAATTTCGGAATTTGGACGAAAAATC
TTGAAGAGGGCTCCGGACGTGTTAAGTCTCAACGATTTTGCTCATCGCAT
GTATGGACGCCCGGTCCAATTGTTCGTGATTATTTTATCGCTTGTCAACA
TGTCCGTGGCATTAATATCGGAGTATACGGCTATCGGTGACTTGTTCGAG
CATTACGTGGGGGGACCCTCGCGCGTGTACATCATCCTCCTCATCGGGCT
GGTAACAGCAATCTACACAGCAAAAGGCGGGCTGCTGGTGTCCCTGCTCA
CAGATCAACTCCAAGCAGGCCTCGTACTCTTCCTTATCCTTATTGCCTCG
ACGTACCTTGCCGTCAATTTTAGGGAGCCATTGCATCGACCCTTCCCAGA
ACGCCTGGGAGTCAACTACTCAGGCCTCTCATCCATATTCTCCCTTCCTA
TCTCCCTCCTCTCCTCGGCATGCTACCAGGAATCATTCTGGCAGCGTGTG
TGGTCGGCAGAGGATAAACGAAGCTTGAGATATGGTGCTGCATTGGGTTT
CGCACTCACTACTGTTGTGATTGCCTTCTTCGGGACCGTGGGGTGGTTGG
GTTTGTTGGCGGAGTTGCCTCCCTTGGACGATCATAATAACTTAGCATTT
TTTGTGCCGTTCTCGGATGAGGCAACGGGAAGCCATCTCAGCTCTATGGT
GATAAGAGTGATGCTGGTGGTTTTAGCCACGACGATGAATGAGAGTGCGG
TGGATTCGTTGCAGAATGCGATTGTTTCGACGTTGTCGTCGTCGTTTTTG
AAGAATAAGCCAGTTAGCTGGTCGAGAGCATTGGTATTTGTAGTGAACGC
ACCTATCGTCCTCATCGCCCTTCAAAGCTTCGCGCTACTCGACCTCTTTC
TTGTTATGAACATTTTGACGACCACCAGGTAGGTGTTTGACGTAGATTAA
TGTGCCAAAAAAACTCACACATTTTTTCGTTTCAGCCTGTAATTTAAATC
TCCGTGCTGTCATACTGTGCGACGTCCGTACACCTATTCATCCCTTCTCA
GCAGTATTTCCCCCTCGTTTGCTCCCTCCCTCTCTTGCAGCACTTTTCCT
CTACTCTCTGCCCTCTGGCTCCCACGGGTGTCAGGCAGCACGGTCCTTCT
CTCCTCAGCCGTGAGCTTGTTTTGTACGTGCTTGTTAGGGGTACTTATAC
AGGGGCAGGGCATATTAAAAGGATTAATATGGACTTTTACTAGTCAATTG
AATCAATATGATTGGCGGATTTTTGTGGTGGCGGCCTTCACCTCCGTGGC
GTGTACGTTTGGGTTGTGGTTCGGTAGGGATACAGGAGGGAAGGGGTTCA
CTGTTCTGTCGATGGGTGCGTTGGAGGGCTCGATAGGTAATCATTTGTCG
CAGCCTTTTTTCGCTCGATGCTGTCCGCGAGCCTTTTCGATATCATTATC
CTTGTCGTCTTCTTTGTCCGGCACTGCGGCTGCCGCTAGTGATGACGGTG
TTGCGTGTGCTGGTGGAGAGGAAGGGAGTGGGAGCAAGTGGTTGGGTGGG
GATAACAAGTCTCCGCCCTTCCCTTCCTCAACCTCGACGCAAAGGCCAAG
ACTCAATACGACCTGGTGCGTCGGGAAAGCGGACAAAATGCCCGTGGAGA
GTGGAAAAGAGGAAGTGGCATCGTTGGCGGGTTTAATACTTACGTCGCCT
CTGGTGGAGGAGACCGTTGTCGAGAGGGCGGCTAGCATGTTAGCTAATGA
GGATGCTCATAACGATGGAGAGATGTTTGTGAGATGATGAATGTAAGTGG
GGTTTTAAGATGGTGACGTTGGCAAGGGGACGGGGAAAGATGGGGTTGGA
CGAGGTGGATGGAGGAAGAGGAGAGTTGGAAAATATTTATCAATCGATAG
TGTTGATGATTGATATTATTTTGCGGGGGGAAAGAGGAAGAGCTGATACA
ATAGCTGCTTGGACAAGCGCCCACCAAAATTGTAATGGGAAGGAGAATGA
TTAATAAAGAGGAAATTACGCCACAAATTGAAACGCTAGAATAAGAAAGA
GAAACATATAAACTATGTGGAATACATGACCGCATGTGTACCACTTCCAG
CAGCGCATGAGGCACATGTGTTGATTTAAAATAAGAAATCTTGAAAGTAT
AAATCCCGTGATAGTGTGAACTCACTTCTGTACACCGAAAGTGAGGAATC
GTGAGGGGAATGACGAGTAAATGACCACAACACCAGCAGCAGTAGGTGAT
GATAGAGAAACAAAGAAACAAAGTGAAGGTGTGCAA

protein sequence of jgi.p|Nanoce1779_2|594749

>mRNA_6364-protein ID=mRNA_6364-protein|Name=jgi.p|Nanoce1779_2|594749|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MARPVTNSNPPRPQPPADQTFIIASYVCAILTLFGFAGVAVILSRRHYST
DIDTFLTARRSQPLLRVAWSFFASSIGAWAIFLPASYPAFGGWISIITYA
VSTGLPLLLISEFGRKILKRAPDVLSLNDFAHRMYGRPVQLFVIILSLVN
MSVALISEYTAIGDLFEHYVGGPSRVYIILLIGLVTAIYTAKGGLLVSLL
TDQLQAGLVLFLILIASTYLAVNFREPLHRPFPERLGVNYSGLSSIFSLP
ISLLSSACYQESFWQRVWSAEDKRSLRYGAALGFALTTVVIAFFGTVGWL
GLLAELPPLDDHNNLAFFVPFSDEATGSHLSSMVIRVMLVVLATTMNESA
VDSLQNAIVSTLSSSFLKNKPVSWSRALVFVVNAPIVLIALQSFALLDLF
LVMNILTTTR*

mRNA from alignment at scaffold_15:459583..462790+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6364 ID=mRNA_6364|Name=jgi.p|Nanoce1779_2|594749|organism=Nannochloropsis oceanica|type=mRNA|length=3208bp|location=Sequence derived from alignment at scaffold_15:459583..462790+ (Nannochloropsis oceanica)
ACAGACGGTACCATTATCAAAAATAACGAAAAAGCATTGGCATTGAGCTG
CAGGGCAGTAAGACCACTGGGCCGCTTGGGCGTGACGGGAACAGCAGACG
GTATGTACTTTGGACATACAACTCACTCCTTCCTCTCTGCTCCATAATCT
TTTCTCCTCGATGATGCACCTGCAACACAATCTTCCCACACAAGCGCACA
CTAATCACAGTAGCGGTACTATCCTTTATGCTACTCGCAGTCTCTTCTTT
GTTACCCAATTACTGCGCTGGCCACGGACACAACACAGGAGGCTCCCTGC
TTCTTGCCTCCCGCTGCCACCGCGCATTCCCCGCCACCCACTCAGCAAGC
TGAATAACGTGCCTTGTCGTCCGAGCCACTCATGAAAAAAGGCTGCGGAC
ATTCATACGCAAAGGCACTTTGTTTTCATTTCTCCTAGGCCCTCCCCCCC
CCCCCCCTTTTTTTTGCGATCCACTAAAGGAAGGAAGTAATAACTTGAAA
TGGCCCGTCCGGTCACAAACTCAAATCCTCCCCGACCTCAACCGCCCGCC
GACCAAACATTCATCATCGCAAGCTATGTATGCGCGATTTTAACCTTATT
CGGATTCGCGGGAGTCGCCGTCATTCTCTCCAGACGACACTATTCTACAG
ATATCGATACCTTCCTCACAGCCCGTCGTTCACAACCCCTCCTTCGGGTG
GCCTGGTCCTTTTTCGCTTCTTCGATTGGGGCGTGGGCGATCTTTCTCCC
TGCTTCGTATCCTGCATTTGGGGGATGGATTTCTATCATAACCTACGCAG
TTTCGACGGGCTTACCTCTTCTTTTAATTTCGGAATTTGGACGAAAAATC
TTGAAGAGGGCTCCGGACGTGTTAAGTCTCAACGATTTTGCTCATCGCAT
GTATGGACGCCCGGTCCAATTGTTCGTGATTATTTTATCGCTTGTCAACA
TGTCCGTGGCATTAATATCGGAGTATACGGCTATCGGTGACTTGTTCGAG
CATTACGTGGGGGGACCCTCGCGCGTGTACATCATCCTCCTCATCGGGCT
GGTAACAGCAATCTACACAGCAAAAGGCGGGCTGCTGGTGTCCCTGCTCA
CAGATCAACTCCAAGCAGGCCTCGTACTCTTCCTTATCCTTATTGCCTCG
ACGTACCTTGCCGTCAATTTTAGGGAGCCATTGCATCGACCCTTCCCAGA
ACGCCTGGGAGTCAACTACTCAGGCCTCTCATCCATATTCTCCCTTCCTA
TCTCCCTCCTCTCCTCGGCATGCTACCAGGAATCATTCTGGCAGCGTGTG
TGGTCGGCAGAGGATAAACGAAGCTTGAGATATGGTGCTGCATTGGGTTT
CGCACTCACTACTGTTGTGATTGCCTTCTTCGGGACCGTGGGGTGGTTGG
GTTTGTTGGCGGAGTTGCCTCCCTTGGACGATCATAATAACTTAGCATTT
TTTGTGCCGTTCTCGGATGAGGCAACGGGAAGCCATCTCAGCTCTATGGT
GATAAGAGTGATGCTGGTGGTTTTAGCCACGACGATGAATGAGAGTGCGG
TGGATTCGTTGCAGAATGCGATTGTTTCGACGTTGTCGTCGTCGTTTTTG
AAGAATAAGCCAGTTAGCTGGTCGAGAGCATTGGTATTTGTAGTGAACGC
ACCTGTAAGTTATACAAAAATTCATAAGTGGGGTTGGGAATGGATTAGGA
AGGTTAAGGGTCGTCTCTCACCCATGTTCCCTCCCTTGCTCCTCCTTTCC
CTCAATCTCTCCCTCACACCCTTTAGATCGTCCTCATCGCCCTTCAAAGC
TTCGCGCTACTCGACCTCTTTCTTGTTATGAACATTTTGACGACCACCAG
GTAGGTGTTTGACGTAGATTAATGTGCCAAAAAAACTCACACATTTTTTC
GTTTCAGCCTGTAATTTAAATCTCCGTGCTGTCATACTGTGCGACGTCCG
TACACCTATTCATCCCTTCTCAGCAGTATTTCCCCCTCGTTTGCTCCCTC
CCTCTCTTGCAGCACTTTTCCTCTACTCTCTGCCCTCTGGCTCCCACGGG
TGTCAGGCAGCACGGTCCTTCTCTCCTCAGCCGTGAGCTTGTTTTGTACG
TGCTTGTTAGGGGTACTTATACAGGGGCAGGGCATATTAAAAGGATTAAT
ATGGACTTTTACTAGTCAATTGAATCAATATGATTGGCGGATTTTTGTGG
TGGCGGCCTTCACCTCCGTGGCGTGTACGTTTGGGTTGTGGTTCGGTAGG
GATACAGGAGGGAAGGGGTTCACTGTTCTGTCGATGGGTGCGTTGGAGGG
CTCGATAGGTAATCATTTGTCGCAGCCTTTTTTCGCTCGATGCTGTCCGC
GAGCCTTTTCGATATCATTATCCTTGTCGTCTTCTTTGTCCGGCACTGCG
GCTGCCGCTAGTGATGACGGTGTTGCGTGTGCTGGTGGAGAGGAAGGGAG
TGGGAGCAAGTGGTTGGGTGGGGATAACAAGTCTCCGCCCTTCCCTTCCT
CAACCTCGACGCAAAGGCCAAGACTCAATACGACCTGGTGCGTCGGGAAA
GCGGACAAAATGCCCGTGGAGAGTGGAAAAGAGGAAGTGGCATCGTTGGC
GGGTTTAATACTTACGTCGCCTCTGGTGGAGGAGACCGTTGTCGAGAGGG
CGGCTAGCATGTTAGCTAATGAGGATGCTCATAACGATGGAGAGATGTTT
GTGAGATGATGAATGTAAGTGGGGTTTTAAGATGGTGACGTTGGCAAGGG
GACGGGGAAAGATGGGGTTGGACGAGGTGGATGGAGGAAGAGGAGAGTTG
GAAAATATTTATCAATCGATAGTGTTGATGATTGATATTATTTTGCGGGG
GGAAAGAGGAAGAGCTGATACAATAGCTGCTTGGACAAGCGCCCACCAAA
ATTGTAATGGGAAGGAGAATGATTAATAAAGAGGAAATTACGCCACAAAT
TGAAACGCTAGAATAAGAAAGAGAAACATATAAACTATGTGGAATACATG
ACCGCATGTGTACCACTTCCAGCAGCGCATGAGGCACATGTGTTGATTTA
AAATAAGAAATCTTGAAAGTATAAATCCCGTGATAGTGTGAACTCACTTC
TGTACACCGAAAGTGAGGAATCGTGAGGGGAATGACGAGTAAATGACCAC
AACACCAGCAGCAGTAGGTGATGATAGAGAAACAAAGAAACAAAGTGAAG
GTGTGCAA

Coding sequence (CDS) from alignment at scaffold_15:459583..462790+

>mRNA_6364 ID=mRNA_6364|Name=jgi.p|Nanoce1779_2|594749|organism=Nannochloropsis oceanica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_15:459583..462790+ (Nannochloropsis oceanica)
ATGGCCCGTCCGGTCACAAACTCAAATCCTCCCCGACCTCAACCGCCCGC
CGACCAAACATTCATCATCGCAAGCTATGTATGCGCGATTTTAACCTTAT
TCGGATTCGCGGGAGTCGCCGTCATTCTCTCCAGACGACACTATTCTACA
GATATCGATACCTTCCTCACAGCCCGTCGTTCACAACCCCTCCTTCGGGT
GGCCTGGTCCTTTTTCGCTTCTTCGATTGGGGCGTGGGCGATCTTTCTCC
CTGCTTCGTATCCTGCATTTGGGGGATGGATTTCTATCATAACCTACGCA
GTTTCGACGGGCTTACCTCTTCTTTTAATTTCGGAATTTGGACGAAAAAT
CTTGAAGAGGGCTCCGGACGTGTTAAGTCTCAACGATTTTGCTCATCGCA
TGTATGGACGCCCGGTCCAATTGTTCGTGATTATTTTATCGCTTGTCAAC
ATGTCCGTGGCATTAATATCGGAGTATACGGCTATCGGTGACTTGTTCGA
GCATTACGTGGGGGGACCCTCGCGCGTGTACATCATCCTCCTCATCGGGC
TGGTAACAGCAATCTACACAGCAAAAGGCGGGCTGCTGGTGTCCCTGCTC
ACAGATCAACTCCAAGCAGGCCTCGTACTCTTCCTTATCCTTATTGCCTC
GACGTACCTTGCCGTCAATTTTAGGGAGCCATTGCATCGACCCTTCCCAG
AACGCCTGGGAGTCAACTACTCAGGCCTCTCATCCATATTCTCCCTTCCT
ATCTCCCTCCTCTCCTCGGCATGCTACCAGGAATCATTCTGGCAGCGTGT
GTGGTCGGCAGAGGATAAACGAAGCTTGAGATATGGTGCTGCATTGGGTT
TCGCACTCACTACTGTTGTGATTGCCTTCTTCGGGACCGTGGGGTGGTTG
GGTTTGTTGGCGGAGTTGCCTCCCTTGGACGATCATAATAACTTAGCATT
TTTTGTGCCGTTCTCGGATGAGGCAACGGGAAGCCATCTCAGCTCTATGG
TGATAAGAGTGATGCTGGTGGTTTTAGCCACGACGATGAATGAGAGTGCG
GTGGATTCGTTGCAGAATGCGATTGTTTCGACGTTGTCGTCGTCGTTTTT
GAAGAATAAGCCAGTTAGCTGGTCGAGAGCATTGGTATTTGTAGTGAACG
CACCTATCGTCCTCATCGCCCTTCAAAGCTTCGCGCTACTCGACCTCTTT
CTTGTTATGAACATTTTGACGACCACCAGGTAGATGGCCCGTCCGGTCAC
AAACTCAAATCCTCCCCGACCTCAACCGCCCGCCGACCAAACATTCATCA
TCGCAAGCTATGTATGCGCGATTTTAACCTTATTCGGATTCGCGGGAGTC
GCCGTCATTCTCTCCAGACGACACTATTCTACAGATATCGATACCTTCCT
CACAGCCCGTCGTTCACAACCCCTCCTTCGGGTGGCCTGGTCCTTTTTCG
CTTCTTCGATTGGGGCGTGGGCGATCTTTCTCCCTGCTTCGTATCCTGCA
TTTGGGGGATGGATTTCTATCATAACCTACGCAGTTTCGACGGGCTTACC
TCTTCTTTTAATTTCGGAATTTGGACGAAAAATCTTGAAGAGGGCTCCGG
ACGTGTTAAGTCTCAACGATTTTGCTCATCGCATGTATGGACGCCCGGTC
CAATTGTTCGTGATTATTTTATCGCTTGTCAACATGTCCGTGGCATTAAT
ATCGGAGTATACGGCTATCGGTGACTTGTTCGAGCATTACGTGGGGGGAC
CCTCGCGCGTGTACATCATCCTCCTCATCGGGCTGGTAACAGCAATCTAC
ACAGCAAAAGGCGGGCTGCTGGTGTCCCTGCTCACAGATCAACTCCAAGC
AGGCCTCGTACTCTTCCTTATCCTTATTGCCTCGACGTACCTTGCCGTCA
ATTTTAGGGAGCCATTGCATCGACCCTTCCCAGAACGCCTGGGAGTCAAC
TACTCAGGCCTCTCATCCATATTCTCCCTTCCTATCTCCCTCCTCTCCTC
GGCATGCTACCAGGAATCATTCTGGCAGCGTGTGTGGTCGGCAGAGGATA
AACGAAGCTTGAGATATGGTGCTGCATTGGGTTTCGCACTCACTACTGTT
GTGATTGCCTTCTTCGGGACCGTGGGGTGGTTGGGTTTGTTGGCGGAGTT
GCCTCCCTTGGACGATCATAATAACTTAGCATTTTTTGTGCCGTTCTCGG
ATGAGGCAACGGGAAGCCATCTCAGCTCTATGGTGATAAGAGTGATGCTG
GTGGTTTTAGCCACGACGATGAATGAGAGTGCGGTGGATTCGTTGCAGAA
TGCGATTGTTTCGACGTTGTCGTCGTCGTTTTTGAAGAATAAGCCAGTTA
GCTGGTCGAGAGCATTGGTATTTGTAGTGAACGCACCTATCGTCCTCATC
GCCCTTCAAAGCTTCGCGCTACTCGACCTCTTTCTTGTTATGAACATTTT
GACGACCACCAGGTAG

Synonyms

Publications