jgi.p|Nanoce1779_2|594744, mRNA_6363 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594744
Unique NamemRNA_6363
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2204
Alignment locationscaffold_15:457097..459300 -

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Properties
Property NameValue
TranscriptId594830
TrackFilteredModels2
ProteinId594744
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:457097..459300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594744gene_6363Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594744mRNA_6363-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6363CDS_6363Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6363 ID=mRNA_6363|Name=jgi.p|Nanoce1779_2|594744|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp
ACAGCGAGTCTCTTTCCTCCCATACTCCTACAAGGCAAGATGGTGCTGGA
AAAATTGACGGCAGGCTGGGAGACTAACACGGTCTCGGACCTGAAGGATC
TATTAGAAGAGGCACGCATAGCCAAGTTCGATTTCGTGGCCATCCCCCTC
GTACACCCACGCTTCGAGCGGGACAACGTAGGGGTAAGCGAAGCCCGCCA
CGGTACCCTGACAAGGAGTGACATGGAAGTAGACAGTCGAACTTGGACCA
CGTGTATCGTTGGCAAGGTGTCAGAATGGCTTGACCCAGGAAACCCGGAT
GTGGACGTGCGTTTGGCAGCAGAGACAGCGCTGAAGCAAGAGTTGGCGTG
GGCCTCGCATTTGGCCGTGCCTGCTGTCCTGATGCCGATGCCCCGACCAA
ACTGTGCCAACTATGCTCGGCTTATCAACCAAGCAGTATCACAGCCGACG
GTGCTGCAGCTGTGGGTGCGGATTCCCTTGGTGCGATGCAAGGCCGAGGA
CGATGTGGACGACGACAAGGAAGAGCAGCAGCAACAGCAACAGCAGCAAC
ACCATCGGCAGCAGGAATGCAACCACAGGGTTAGTAACGAAGGCGATCAA
TTGGGAAGCACAGTAACGCCCACAGCAACCAACGGATCAAATACTGCCGC
TGCAGCAGGCGCTAATCAAACGAGCAGCATAAAACAAAAACAGCAACAAC
CCATCTCTTCTCTCTCGTCCTCCTACTTGATGAACATGGTCCCTTCCGCC
AAAGAAGATCCCTGGGAGACGTGGAACCGCCTTCGTACCCTCTGCGAATT
CAATGCCTCCCTAGGCGTCGCCCTGGAAGTTACCGAAGACCTCCCCCCTC
GCCAGACTCTGCAACGTTGGCGCGGCGAGCCCGTCAAAGCCATCATTTTC
CCCACATCAATCTTCCTCACCAACAAAAAGGGCTTCCCCGTGCTGAGCAA
GCCCCACCAGTATTTTGTGCTGGAGATGTACGTATTAAAAATTCAAATAA
TTCTGAATGGGAGGGCCAGGCATGCAGGAGGGTATGAAATCTATCTACAG
TACCTAGAGCACCTGCGCCTAAAACTTTTCCCCGTTCCCGAGCAAGATCG
CTTTGAATCTCCTTATTACGACTATCTCCAAGCCCCCTTACAACCCCTCA
TGGATAACCTGGAATCTCAAACCTACGAGACCTTCGAAAAAGATCCCGTC
AAATACGCGCGTTACGAGGATGCCGTGGCTGCCGCCCTCTCGTCCACCCC
TTCCTCCATCACCTCCGTCGTCATGGTTGTCGGCGCTGGTCGTGGCCCCT
TGGTCCGAGCATCCCTTGCCGCTGCTGCCAGGGCAGAACGGGAGGTACGT
GTCTATGCAGTTGAAAAGAACCCGAACGCCGTGGTGACGTTGAGAAATAT
GGTGAGATGTGAGGAGTGGAGCAATGTGACAGTTGTTGCCACTGATATGC
GAGTATGGGCCGCCCCTGAAAAGGCCGATATTTTGGTCAGTGAGCTACTA
GGCTCTTTCGGTGATAACGAGCTCTCTCCAGAGTGCTTGGATAAGGCACA
GGCCTTTCTCAAGGAAGGGGGGATATCAATTCCGTGTGAGTACACATCTT
ATCTTGCCCCCATCTCCTCCTCTAAGCTCTGGAATGAGGTCCACAGCTAC
AAAGACGTCAAGCACATGGAAACTGCCTACGTCGTGAAGCTCCACAATTT
TTGTCAGCTCTCCGAAGCCCAGCCCTGTTTTACTTTCTCACACCCAAATG
GCGCGGAAAAAATCGATAACACGCGTTATGCTTGCCTGAGGTTTCCGGCG
ACAACTGCGGCAACCATACATGGATTTGCTGGTTATTTTAACGCGAGGTT
GTATGACAATATCTTCATTTCAATTGTGCCGCAGACTTTCTCTACGGGTA
TGTTCTCGTGGTTTCCCCTTTATTTCCCCTTGAGGACACCTGCGTATGCA
CCGGAGGGGGTGCAGGTGGAGGTACACATATGGAGGAACGTTAATTCGAG
AAAAGTGTGGTATGAGTGGGCATTGACGGGGCCGGTGGTGACTCCGATTC
ATAACCCTAATGGAAGGTCGTATTGGATTGGGTTATAAGGAAAAAGGGAA
GGAGGGGGGGGAAGAGGTTGAAGGAGCGATGTAGTAAGTGTGGAGATGAT
TAGAAGCACAAATGAAAAATAGACATGATTAGAAAGTACAATTTTAAAAG
ACCC
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protein sequence of jgi.p|Nanoce1779_2|594744

>mRNA_6363-protein ID=mRNA_6363-protein|Name=jgi.p|Nanoce1779_2|594744|organism=Nannochloropsis oceanica|type=polypeptide|length=683bp
MVLEKLTAGWETNTVSDLKDLLEEARIAKFDFVAIPLVHPRFERDNVGVS
EARHGTLTRSDMEVDSRTWTTCIVGKVSEWLDPGNPDVDVRLAAETALKQ
ELAWASHLAVPAVLMPMPRPNCANYARLINQAVSQPTVLQLWVRIPLVRC
KAEDDVDDDKEEQQQQQQQQHHRQQECNHRVSNEGDQLGSTVTPTATNGS
NTAAAAGANQTSSIKQKQQQPISSLSSSYLMNMVPSAKEDPWETWNRLRT
LCEFNASLGVALEVTEDLPPRQTLQRWRGEPVKAIIFPTSIFLTNKKGFP
VLSKPHQYFVLEMYVLKIQIILNGRARHAGGYEIYLQYLEHLRLKLFPVP
EQDRFESPYYDYLQAPLQPLMDNLESQTYETFEKDPVKYARYEDAVAAAL
SSTPSSITSVVMVVGAGRGPLVRASLAAAARAEREVRVYAVEKNPNAVVT
LRNMVRCEEWSNVTVVATDMRVWAAPEKADILVSELLGSFGDNELSPECL
DKAQAFLKEGGISIPCEYTSYLAPISSSKLWNEVHSYKDVKHMETAYVVK
LHNFCQLSEAQPCFTFSHPNGAEKIDNTRYACLRFPATTAATIHGFAGYF
NARLYDNIFISIVPQTFSTGMFSWFPLYFPLRTPAYAPEGVQVEVHIWRN
VNSRKVWYEWALTGPVVTPIHNPNGRSYWIGL*
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mRNA from alignment at scaffold_15:457097..459300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6363 ID=mRNA_6363|Name=jgi.p|Nanoce1779_2|594744|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp|location=Sequence derived from alignment at scaffold_15:457097..459300- (Nannochloropsis oceanica)
ACAGCGAGTCTCTTTCCTCCCATACTCCTACAAGGCAAGATGGTGCTGGA
AAAATTGACGGCAGGCTGGGAGACTAACACGGTCTCGGACCTGAAGGATC
TATTAGAAGAGGCACGCATAGCCAAGTTCGATTTCGTGGCCATCCCCCTC
GTACACCCACGCTTCGAGCGGGACAACGTAGGGGTAAGCGAAGCCCGCCA
CGGTACCCTGACAAGGAGTGACATGGAAGTAGACAGTCGAACTTGGACCA
CGTGTATCGTTGGCAAGGTGTCAGAATGGCTTGACCCAGGAAACCCGGAT
GTGGACGTGCGTTTGGCAGCAGAGACAGCGCTGAAGCAAGAGTTGGCGTG
GGCCTCGCATTTGGCCGTGCCTGCTGTCCTGATGCCGATGCCCCGACCAA
ACTGTGCCAACTATGCTCGGCTTATCAACCAAGCAGTATCACAGCCGACG
GTGCTGCAGCTGTGGGTGCGGATTCCCTTGGTGCGATGCAAGGCCGAGGA
CGATGTGGACGACGACAAGGAAGAGCAGCAGCAACAGCAACAGCAGCAAC
ACCATCGGCAGCAGGAATGCAACCACAGGGTTAGTAACGAAGGCGATCAA
TTGGGAAGCACAGTAACGCCCACAGCAACCAACGGATCAAATACTGCCGC
TGCAGCAGGCGCTAATCAAACGAGCAGCATAAAACAAAAACAGCAACAAC
CCATCTCTTCTCTCTCGTCCTCCTACTTGATGAACATGGTCCCTTCCGCC
AAAGAAGATCCCTGGGAGACGTGGAACCGCCTTCGTACCCTCTGCGAATT
CAATGCCTCCCTAGGCGTCGCCCTGGAAGTTACCGAAGACCTCCCCCCTC
GCCAGACTCTGCAACGTTGGCGCGGCGAGCCCGTCAAAGCCATCATTTTC
CCCACATCAATCTTCCTCACCAACAAAAAGGGCTTCCCCGTGCTGAGCAA
GCCCCACCAGTATTTTGTGCTGGAGATGTACGTATTAAAAATTCAAATAA
TTCTGAATGGGAGGGCCAGGCATGCAGGAGGGTATGAAATCTATCTACAG
TACCTAGAGCACCTGCGCCTAAAACTTTTCCCCGTTCCCGAGCAAGATCG
CTTTGAATCTCCTTATTACGACTATCTCCAAGCCCCCTTACAACCCCTCA
TGGATAACCTGGAATCTCAAACCTACGAGACCTTCGAAAAAGATCCCGTC
AAATACGCGCGTTACGAGGATGCCGTGGCTGCCGCCCTCTCGTCCACCCC
TTCCTCCATCACCTCCGTCGTCATGGTTGTCGGCGCTGGTCGTGGCCCCT
TGGTCCGAGCATCCCTTGCCGCTGCTGCCAGGGCAGAACGGGAGGTACGT
GTCTATGCAGTTGAAAAGAACCCGAACGCCGTGGTGACGTTGAGAAATAT
GGTGAGATGTGAGGAGTGGAGCAATGTGACAGTTGTTGCCACTGATATGC
GAGTATGGGCCGCCCCTGAAAAGGCCGATATTTTGGTCAGTGAGCTACTA
GGCTCTTTCGGTGATAACGAGCTCTCTCCAGAGTGCTTGGATAAGGCACA
GGCCTTTCTCAAGGAAGGGGGGATATCAATTCCGTGTGAGTACACATCTT
ATCTTGCCCCCATCTCCTCCTCTAAGCTCTGGAATGAGGTCCACAGCTAC
AAAGACGTCAAGCACATGGAAACTGCCTACGTCGTGAAGCTCCACAATTT
TTGTCAGCTCTCCGAAGCCCAGCCCTGTTTTACTTTCTCACACCCAAATG
GCGCGGAAAAAATCGATAACACGCGTTATGCTTGCCTGAGGTTTCCGGCG
ACAACTGCGGCAACCATACATGGATTTGCTGGTTATTTTAACGCGAGGTT
GTATGACAATATCTTCATTTCAATTGTGCCGCAGACTTTCTCTACGGGTA
TGTTCTCGTGGTTTCCCCTTTATTTCCCCTTGAGGACACCTGCGTATGCA
CCGGAGGGGGTGCAGGTGGAGGTACACATATGGAGGAACGTTAATTCGAG
AAAAGTGTGGTATGAGTGGGCATTGACGGGGCCGGTGGTGACTCCGATTC
ATAACCCTAATGGAAGGTCGTATTGGATTGGGTTATAAGGAAAAAGGGAA
GGAGGGGGGGGAAGAGGTTGAAGGAGCGATGTAGTAAGTGTGGAGATGAT
TAGAAGCACAAATGAAAAATAGACATGATTAGAAAGTACAATTTTAAAAG
ACCC
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Coding sequence (CDS) from alignment at scaffold_15:457097..459300-

>mRNA_6363 ID=mRNA_6363|Name=jgi.p|Nanoce1779_2|594744|organism=Nannochloropsis oceanica|type=CDS|length=2049bp|location=Sequence derived from alignment at scaffold_15:457097..459300- (Nannochloropsis oceanica)
ATGGTGCTGGAAAAATTGACGGCAGGCTGGGAGACTAACACGGTCTCGGA
CCTGAAGGATCTATTAGAAGAGGCACGCATAGCCAAGTTCGATTTCGTGG
CCATCCCCCTCGTACACCCACGCTTCGAGCGGGACAACGTAGGGGTAAGC
GAAGCCCGCCACGGTACCCTGACAAGGAGTGACATGGAAGTAGACAGTCG
AACTTGGACCACGTGTATCGTTGGCAAGGTGTCAGAATGGCTTGACCCAG
GAAACCCGGATGTGGACGTGCGTTTGGCAGCAGAGACAGCGCTGAAGCAA
GAGTTGGCGTGGGCCTCGCATTTGGCCGTGCCTGCTGTCCTGATGCCGAT
GCCCCGACCAAACTGTGCCAACTATGCTCGGCTTATCAACCAAGCAGTAT
CACAGCCGACGGTGCTGCAGCTGTGGGTGCGGATTCCCTTGGTGCGATGC
AAGGCCGAGGACGATGTGGACGACGACAAGGAAGAGCAGCAGCAACAGCA
ACAGCAGCAACACCATCGGCAGCAGGAATGCAACCACAGGGTTAGTAACG
AAGGCGATCAATTGGGAAGCACAGTAACGCCCACAGCAACCAACGGATCA
AATACTGCCGCTGCAGCAGGCGCTAATCAAACGAGCAGCATAAAACAAAA
ACAGCAACAACCCATCTCTTCTCTCTCGTCCTCCTACTTGATGAACATGG
TCCCTTCCGCCAAAGAAGATCCCTGGGAGACGTGGAACCGCCTTCGTACC
CTCTGCGAATTCAATGCCTCCCTAGGCGTCGCCCTGGAAGTTACCGAAGA
CCTCCCCCCTCGCCAGACTCTGCAACGTTGGCGCGGCGAGCCCGTCAAAG
CCATCATTTTCCCCACATCAATCTTCCTCACCAACAAAAAGGGCTTCCCC
GTGCTGAGCAAGCCCCACCAGTATTTTGTGCTGGAGATGTACGTATTAAA
AATTCAAATAATTCTGAATGGGAGGGCCAGGCATGCAGGAGGGTATGAAA
TCTATCTACAGTACCTAGAGCACCTGCGCCTAAAACTTTTCCCCGTTCCC
GAGCAAGATCGCTTTGAATCTCCTTATTACGACTATCTCCAAGCCCCCTT
ACAACCCCTCATGGATAACCTGGAATCTCAAACCTACGAGACCTTCGAAA
AAGATCCCGTCAAATACGCGCGTTACGAGGATGCCGTGGCTGCCGCCCTC
TCGTCCACCCCTTCCTCCATCACCTCCGTCGTCATGGTTGTCGGCGCTGG
TCGTGGCCCCTTGGTCCGAGCATCCCTTGCCGCTGCTGCCAGGGCAGAAC
GGGAGGTACGTGTCTATGCAGTTGAAAAGAACCCGAACGCCGTGGTGACG
TTGAGAAATATGGTGAGATGTGAGGAGTGGAGCAATGTGACAGTTGTTGC
CACTGATATGCGAGTATGGGCCGCCCCTGAAAAGGCCGATATTTTGGTCA
GTGAGCTACTAGGCTCTTTCGGTGATAACGAGCTCTCTCCAGAGTGCTTG
GATAAGGCACAGGCCTTTCTCAAGGAAGGGGGGATATCAATTCCGTGTGA
GTACACATCTTATCTTGCCCCCATCTCCTCCTCTAAGCTCTGGAATGAGG
TCCACAGCTACAAAGACGTCAAGCACATGGAAACTGCCTACGTCGTGAAG
CTCCACAATTTTTGTCAGCTCTCCGAAGCCCAGCCCTGTTTTACTTTCTC
ACACCCAAATGGCGCGGAAAAAATCGATAACACGCGTTATGCTTGCCTGA
GGTTTCCGGCGACAACTGCGGCAACCATACATGGATTTGCTGGTTATTTT
AACGCGAGGTTGTATGACAATATCTTCATTTCAATTGTGCCGCAGACTTT
CTCTACGGGTATGTTCTCGTGGTTTCCCCTTTATTTCCCCTTGAGGACAC
CTGCGTATGCACCGGAGGGGGTGCAGGTGGAGGTACACATATGGAGGAAC
GTTAATTCGAGAAAAGTGTGGTATGAGTGGGCATTGACGGGGCCGGTGGT
GACTCCGATTCATAACCCTAATGGAAGGTCGTATTGGATTGGGTTATAA
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Synonyms
Publications