jgi.p|Nanoce1779_2|640334, mRNA_6357 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640334
Unique NamemRNA_6357
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length267
Alignment locationscaffold_15:427411..428297 +

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Properties
Property NameValue
TranscriptId640420
TrackFilteredModels2
ProteinId640334
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:427411..428297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640334gene_6357Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640334mRNA_6357-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6357CDS_6357Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6357 ID=mRNA_6357|Name=jgi.p|Nanoce1779_2|640334|organism=Nannochloropsis oceanica|type=mRNA|length=267bp
ATGCCGACAGGCATCAATGCAGGGGGGATGGATTTCTTGGGAGGAGTGGT
GAGTGCATGTAAATCTCAAGAGTCTGCCCGGGAGTGCCGACGGCGACAAC
GGGCACATGTGGAGGAGCTGGCTTCGAGGGTATCGACGCTGCAGGCCGAC
AATCGCCGCCTACAGATCCAGCTGCAGTCGGTACAGCAGCGTGTCAAGGA
GCAGGAGAAGCAGAAGCTCTGCATGGAGAGCGAGATGGAGGAAATGCTTC
AGAAGGAGGAAAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|640334

>mRNA_6357-protein ID=mRNA_6357-protein|Name=jgi.p|Nanoce1779_2|640334|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MPTGINAGGMDFLGGVVSACKSQESARECRRRQRAHVEELASRVSTLQAD
NRRLQIQLQSVQQRVKEQEKQKLCMESEMEEMLQKEEK*
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mRNA from alignment at scaffold_15:427411..428297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6357 ID=mRNA_6357|Name=jgi.p|Nanoce1779_2|640334|organism=Nannochloropsis oceanica|type=mRNA|length=887bp|location=Sequence derived from alignment at scaffold_15:427411..428297+ (Nannochloropsis oceanica)
ATGCCGACAGGCATCAATGCAGGGGGGATGGATTTCTTGGGTAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGTAAGTTAGAGGGAGGACAGGAGACGCGA
GGCATACCGTTCTGTCATTGGCACTGGTCTGGAAAAACTTCGTTTCTGCT
TCCCTCCTTCCCTCCCTCCAGGAGGAGTGGTGAGTGCATGTAAATCTCAG
TACAAAGAGAGAGTCTGCCCGGGAGTGCCTACTCTTCTCATTTATCATAT
CATACACACACACACACACATACACACACACACATACACACACACATATA
TATATACATATATAAGTATACACACGCATAACCCCCCCACCCCACACACA
TATATATACATACATACATGCACATGACATACATTTAATACAACACATAC
ACACACATACACATATCAATACAGAGAGTCTGCCCGGGAGTGCCGACGGC
GACAACGGGCACATGTGGAGGAGCTGGCTTCGAGGGTATCGACGCTGCAG
GTAGAGGGCGGGCGGGAGGGAGAAAGGGTGGGAGGGATGGAGGGATGGAG
GGCGGGAGAGATGGCGGGAGGGAGAAATGGCGGGAGGGAGGGGTGAAGGG
GGGGAGGGCGAGATGACGGGAGGGAGGGGGGGAGGGCGGTAGGAAGAGAT
GGCGGGAGGGAGATTTTGCTCTGTCCGCGATTCTTCGTACTGATCCTTCT
TCCCCTTTTTCCTCCCTCCCTCCCTCCCTGGCTCCCTCCCTCCATTCCTT
CTTCCTTCTACCAGGCCGACAATCGCCGCCTACAGATCCAGCTGCAGTCG
GTACAGCAGCGTGTCAAGGAGCAGGAGAAGCAGAAGCTCTGCATGGAGAG
CGAGATGGAGGAAATGCTTCAGAAGGAGGAAAAGTAG
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Coding sequence (CDS) from alignment at scaffold_15:427411..428297+

>mRNA_6357 ID=mRNA_6357|Name=jgi.p|Nanoce1779_2|640334|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_15:427411..428297+ (Nannochloropsis oceanica)
ATGCCGACAGGCATCAATGCAGGGGGGATGGATTTCTTGGGAGGAGTGGT
GAGTGCATGTAAATCTCAAGAGTCTGCCCGGGAGTGCCGACGGCGACAAC
GGGCACATGTGGAGGAGCTGGCTTCGAGGGTATCGACGCTGCAGGCCGAC
AATCGCCGCCTACAGATCCAGCTGCAGTCGGTACAGCAGCGTGTCAAGGA
GCAGGAGAAGCAGAAGCTCTGCATGGAGAGCGAGATGGAGGAAATGCTTC
AGAAGGAGGAAAAGTAGATGCCGACAGGCATCAATGCAGGGGGGATGGAT
TTCTTGGGAGGAGTGGTGAGTGCATGTAAATCTCAAGAGTCTGCCCGGGA
GTGCCGACGGCGACAACGGGCACATGTGGAGGAGCTGGCTTCGAGGGTAT
CGACGCTGCAGGCCGACAATCGCCGCCTACAGATCCAGCTGCAGTCGGTA
CAGCAGCGTGTCAAGGAGCAGGAGAAGCAGAAGCTCTGCATGGAGAGCGA
GATGGAGGAAATGCTTCAGAAGGAGGAAAAGTAGATGCCGACAGGCATCA
ATGCAGGGGGGATGGATTTCTTGGGAGGAGTGGTGAGTGCATGTAAATCT
CAAGAGTCTGCCCGGGAGTGCCGACGGCGACAACGGGCACATGTGGAGGA
GCTGGCTTCGAGGGTATCGACGCTGCAGGCCGACAATCGCCGCCTACAGA
TCCAGCTGCAGTCGGTACAGCAGCGTGTCAAGGAGCAGGAGAAGCAGAAG
CTCTGCATGGAGAGCGAGATGGAGGAAATGCTTCAGAAGGAGGAAAAGTA
GATGCCGACAGGCATCAATGCAGGGGGGATGGATTTCTTGGGAGGAGTGG
TGAGTGCATGTAAATCTCAAGAGTCTGCCCGGGAGTGCCGACGGCGACAA
CGGGCACATGTGGAGGAGCTGGCTTCGAGGGTATCGACGCTGCAGGCCGA
CAATCGCCGCCTACAGATCCAGCTGCAGTCGGTACAGCAGCGTGTCAAGG
AGCAGGAGAAGCAGAAGCTCTGCATGGAGAGCGAGATGGAGGAAATGCTT
CAGAAGGAGGAAAAGTAG
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Synonyms
Publications