jgi.p|Nanoce1779_2|594713, mRNA_6355 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594713
Unique NamemRNA_6355
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length653
Alignment locationscaffold_15:423309..424378 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594799
TrackFilteredModels2
ProteinId594713
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:423309..424378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594713gene_6355Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594713mRNA_6355-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6355CDS_6355Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6355 ID=mRNA_6355|Name=jgi.p|Nanoce1779_2|594713|organism=Nannochloropsis oceanica|type=mRNA|length=653bp
ACAGGTTGAGACTGTTAGCTGGGAGGAAACAAGGAAGGAAGGAAGGAAGG
AAGGACGAACGCCATTGTTTTCTTCATCATCACCCGCACACAGTCCGTCT
CATGAAGGTCAAGATCCAAAGGTGGCATGGCGTGGCCACCTGGCGGTGGG
ATGTCAACGATGAGCGCTGTGGCATTTGCTACACGGCATTCGAAGCCTGT
TGTCCGGATTGCAACATTCCCGGGGATGACTGCCCGCCGGTGTGGGGTCG
GTGCAACCATGCCTTTCACATGCACTGCATCATGAAGTGGCTCAATAGTC
AGGCGAACGCCAATAAACAAACCTGCCCGGCCTGTCGTCAAAAATGGGAG
TTTCGTGGCTGAGAGGCGACAGCACTTGTGAATGAAAAGTAAAGGAAAAA
TAAATGAACAGCGTCGAAAAAGACAAATCTACTGAAAAGTATTCAATAGT
TTAACGTACCGATGTCTCACGTCTGCTGCCGCTGCTGCGGTGGTGGTGGA
AAAAAGAGATTGAAAGGAAAAGGTAGAACCGCCTGTACATAATTACATGG
AAGAGCTGAAGAGCAACGAGGATGAGGGGGAAAAAAAAAGGAAAAGCACA
AAGGCGGTGGTAGCAGACCAGAAATGTACGCACATGCGCACATTTCCACC
AAT
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protein sequence of jgi.p|Nanoce1779_2|594713

>mRNA_6355-protein ID=mRNA_6355-protein|Name=jgi.p|Nanoce1779_2|594713|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGR
CNHAFHMHCIMKWLNSQANANKQTCPACRQKWEFRG*
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mRNA from alignment at scaffold_15:423309..424378+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6355 ID=mRNA_6355|Name=jgi.p|Nanoce1779_2|594713|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp|location=Sequence derived from alignment at scaffold_15:423309..424378+ (Nannochloropsis oceanica)
ACAGGTTGAGACTGTTAGCTGGGAGGAAACAAGGAAGGAAGGAAGGAAGG
AAGGACGAACGCCATTGTTTTCTTCATCATCACCCGCACACAGTCCGTCT
CATGAAGGTCAAGATCCAAAGGTAAGTTTTGTGGTGGGCTCGCTCTGGAT
GGCGCTTACGAGACGAGTTGTAGTGAATATTATTATTCACGGACATCTGA
TCGGGTGCCTTCCGTTGTCCAACTCAACTGACCTCCCTTTTCCCCATTTT
CGACCATTCCCGTGTACCTCGACCCCCGACATAGGTGGCATGGCGTGGCC
ACCTGGCGGTGGGATGTCAACGATGAGCGCTGTGGCATTTGCTACACGGC
ATTCGAAGCCTGTTGTCCGGATTGCAACATTCCCGGGGATGACTGCCCGC
CGGTGTGGGGTCGGTGCAACCATGCCTTTCACATGCACTGCATCATGAAG
GTACGTGAATGAATGAGGAGAATGGAAGCAGAACGCACGGAAGCGCTTCG
AAAAGGTGAATGATGGATATACAGGTAGAATGCACATATCACTGGCATAT
ACAGCAGTGAAAAAATACGGAGAGAGGGGGAGAGAGAGCAGCACATCAAC
ATAATGAACTTTTGTGGCACTTTCCTCCGACCTGTCCCTTTTTTGCTTCT
TGGATTCTACATTTCTTTCTTATTCTTCTTTGTCCTTCTTGATAACTCAC
ACAGTGGCTCAATAGTCAGGCGAACGCCAATAAACAAACCTGCCCGGCCT
GTCGTCAAAAATGGGAGTTTCGTGGCTGAGAGGCGACAGCACTTGTGAAT
GAAAAGTAAAGGAAAAATAAATGAACAGCGTCGAAAAAGACAAATCTACT
GAAAAGTATTCAATAGTTTAACGTACCGATGTCTCACGTCTGCTGCCGCT
GCTGCGGTGGTGGTGGAAAAAAGAGATTGAAAGGAAAAGGTAGAACCGCC
TGTACATAATTACATGGAAGAGCTGAAGAGCAACGAGGATGAGGGGGAAA
AAAAAAGGAAAAGCACAAAGGCGGTGGTAGCAGACCAGAAATGTACGCAC
ATGCGCACATTTCCACCAAT
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Coding sequence (CDS) from alignment at scaffold_15:423309..424378+

>mRNA_6355 ID=mRNA_6355|Name=jgi.p|Nanoce1779_2|594713|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_15:423309..424378+ (Nannochloropsis oceanica)
ATGAAGGTCAAGATCCAAAGGTGGCATGGCGTGGCCACCTGGCGGTGGGA
TGTCAACGATGAGCGCTGTGGCATTTGCTACACGGCATTCGAAGCCTGTT
GTCCGGATTGCAACATTCCCGGGGATGACTGCCCGCCGGTGTGGGGTCGG
TGCAACCATGCCTTTCACATGCACTGCATCATGAAGTGGCTCAATAGTCA
GGCGAACGCCAATAAACAAACCTGCCCGGCCTGTCGTCAAAAATGGGAGT
TTCGTGGCTGAATGAAGGTCAAGATCCAAAGGTGGCATGGCGTGGCCACC
TGGCGGTGGGATGTCAACGATGAGCGCTGTGGCATTTGCTACACGGCATT
CGAAGCCTGTTGTCCGGATTGCAACATTCCCGGGGATGACTGCCCGCCGG
TGTGGGGTCGGTGCAACCATGCCTTTCACATGCACTGCATCATGAAGTGG
CTCAATAGTCAGGCGAACGCCAATAAACAAACCTGCCCGGCCTGTCGTCA
AAAATGGGAGTTTCGTGGCTGAATGAAGGTCAAGATCCAAAGGTGGCATG
GCGTGGCCACCTGGCGGTGGGATGTCAACGATGAGCGCTGTGGCATTTGC
TACACGGCATTCGAAGCCTGTTGTCCGGATTGCAACATTCCCGGGGATGA
CTGCCCGCCGGTGTGGGGTCGGTGCAACCATGCCTTTCACATGCACTGCA
TCATGAAGTGGCTCAATAGTCAGGCGAACGCCAATAAACAAACCTGCCCG
GCCTGTCGTCAAAAATGGGAGTTTCGTGGCTGA
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Synonyms
Publications