jgi.p|Nanoce1779_2|90813, mRNA_6354 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|90813
Unique NamemRNA_6354
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1228
Alignment locationscaffold_15:420915..422142 +

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Properties
Property NameValue
TranscriptId90899
TrackFilteredModels2
ProteinId90813
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:420915..422142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|90813gene_6354Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|90813mRNA_6354-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6354CDS_6354Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6354 ID=mRNA_6354|Name=jgi.p|Nanoce1779_2|90813|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp
CGAGCCGTTCTGGTCCTTGCCATCCGCCCTTTTGTTGCCGCAGAAGGAGG
GTGTACCGCTGATGGGCATGGGCAGAAACCGCACAATGGGCTCGTTCACT
TCCTCCGCTTCTTCCTCCGCCGGTTCCTCGCCCGAACAACTCAAGACCCT
GGGTGCAGCAGGTGCGGTTGTCGGAGGAACCGCGAGCACAAGGACACACC
TTCCCACCAGACATATCGACGATTTGGGCCACACCCCGCTATCGCAGCTC
ACCTCTCTTTTGCAGCAAAAGCTACCAGACCGGCTTCCGCCGTCGCAGCA
GCAGCAGTCTCAACAACAAGAGCAGCAGCAGCAGCAGGAAGCCGCCTGCC
CTGGCAAGACCAAGACAGACCTGACGGCCTCAGCACCTACATTCTGTCTG
GCGACACAACGACCTTCCTCCTCCTCCTCGTCTTTCTCCGCTTCCCCCGC
GCGGACACACGCTTGCCCAACGCTCGGTCCCGTCCCAATCCATTCACAAG
CAGCGCGCCACCTCCCTCCGCACTACACACCCGCCCAAGTTATGATGTAT
GCCCAGCAAAACCGTTACGGTTCCCCCCCCCCTCCTCCCTCCCTTGCCGC
CCAGTCCTCGGCAGGCCACGGAGGCGGCAATATCTCCTATCATGGACCAT
CTGGCATAATCAGTCGCCATCCTTCCCCCCCTGCGCTTGCTAACGGGAAC
TCTATCATTCGCATTGCAGCCTACCCCCCTCCTCCACCGCACGCGCAAAC
CCAACCCCCTCCTGCTTCAGTGCACTACCACCACCCAGCCCACACTAGTG
CTGCACCTGCTGCTGGCGCCGGACTTTATCATTGCGCGGCCACCTCACAC
TCTAACCACCACCATGCTCAAGCACAGGCGCCAGTGAACGCCCCTCACGG
TGGATATGGACACAGTCACGGACAACATGGGCCAGGAACGGTGCCATCAC
GCTTTCAGAGCCCTCTGCATCCACAGCTTCATTCCCACCATCATCACCAC
CACCCTCACTATCCGCCGCATCATGGATATCATTGAGTGCGGGAAGAAGG
CTGGGGAGGTAGATTGGGAGGAAGGGAGGGAAGAAAGCTAAGATGAGCGT
CGCGGAAATTAGTCAGAAGACTTAGCTAGGGAGAAAGAGGGGAACAAATA
AACAGACACTCTTAAGGTTTTCAGTGAAAGAGTTATCAAAGATGCAGACA
GAGAAAGAGTGGACCAATCACTTGACAT
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protein sequence of jgi.p|Nanoce1779_2|90813

>mRNA_6354-protein ID=mRNA_6354-protein|Name=jgi.p|Nanoce1779_2|90813|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MGMGRNRTMGSFTSSASSSAGSSPEQLKTLGAAGAVVGGTASTRTHLPTR
HIDDLGHTPLSQLTSLLQQKLPDRLPPSQQQQSQQQEQQQQQEAACPGKT
KTDLTASAPTFCLATQRPSSSSSSFSASPARTHACPTLGPVPIHSQAARH
LPPHYTPAQVMMYAQQNRYGSPPPPPSLAAQSSAGHGGGNISYHGPSGII
SRHPSPPALANGNSIIRIAAYPPPPPHAQTQPPPASVHYHHPAHTSAAPA
AGAGLYHCAATSHSNHHHAQAQAPVNAPHGGYGHSHGQHGPGTVPSRFQS
PLHPQLHSHHHHHHPHYPPHHGYH*
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mRNA from alignment at scaffold_15:420915..422142+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6354 ID=mRNA_6354|Name=jgi.p|Nanoce1779_2|90813|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp|location=Sequence derived from alignment at scaffold_15:420915..422142+ (Nannochloropsis oceanica)
CGAGCCGTTCTGGTCCTTGCCATCCGCCCTTTTGTTGCCGCAGAAGGAGG
GTGTACCGCTGATGGGCATGGGCAGAAACCGCACAATGGGCTCGTTCACT
TCCTCCGCTTCTTCCTCCGCCGGTTCCTCGCCCGAACAACTCAAGACCCT
GGGTGCAGCAGGTGCGGTTGTCGGAGGAACCGCGAGCACAAGGACACACC
TTCCCACCAGACATATCGACGATTTGGGCCACACCCCGCTATCGCAGCTC
ACCTCTCTTTTGCAGCAAAAGCTACCAGACCGGCTTCCGCCGTCGCAGCA
GCAGCAGTCTCAACAACAAGAGCAGCAGCAGCAGCAGGAAGCCGCCTGCC
CTGGCAAGACCAAGACAGACCTGACGGCCTCAGCACCTACATTCTGTCTG
GCGACACAACGACCTTCCTCCTCCTCCTCGTCTTTCTCCGCTTCCCCCGC
GCGGACACACGCTTGCCCAACGCTCGGTCCCGTCCCAATCCATTCACAAG
CAGCGCGCCACCTCCCTCCGCACTACACACCCGCCCAAGTTATGATGTAT
GCCCAGCAAAACCGTTACGGTTCCCCCCCCCCTCCTCCCTCCCTTGCCGC
CCAGTCCTCGGCAGGCCACGGAGGCGGCAATATCTCCTATCATGGACCAT
CTGGCATAATCAGTCGCCATCCTTCCCCCCCTGCGCTTGCTAACGGGAAC
TCTATCATTCGCATTGCAGCCTACCCCCCTCCTCCACCGCACGCGCAAAC
CCAACCCCCTCCTGCTTCAGTGCACTACCACCACCCAGCCCACACTAGTG
CTGCACCTGCTGCTGGCGCCGGACTTTATCATTGCGCGGCCACCTCACAC
TCTAACCACCACCATGCTCAAGCACAGGCGCCAGTGAACGCCCCTCACGG
TGGATATGGACACAGTCACGGACAACATGGGCCAGGAACGGTGCCATCAC
GCTTTCAGAGCCCTCTGCATCCACAGCTTCATTCCCACCATCATCACCAC
CACCCTCACTATCCGCCGCATCATGGATATCATTGAGTGCGGGAAGAAGG
CTGGGGAGGTAGATTGGGAGGAAGGGAGGGAAGAAAGCTAAGATGAGCGT
CGCGGAAATTAGTCAGAAGACTTAGCTAGGGAGAAAGAGGGGAACAAATA
AACAGACACTCTTAAGGTTTTCAGTGAAAGAGTTATCAAAGATGCAGACA
GAGAAAGAGTGGACCAATCACTTGACAT
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Coding sequence (CDS) from alignment at scaffold_15:420915..422142+

>mRNA_6354 ID=mRNA_6354|Name=jgi.p|Nanoce1779_2|90813|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_15:420915..422142+ (Nannochloropsis oceanica)
ATGGGCATGGGCAGAAACCGCACAATGGGCTCGTTCACTTCCTCCGCTTC
TTCCTCCGCCGGTTCCTCGCCCGAACAACTCAAGACCCTGGGTGCAGCAG
GTGCGGTTGTCGGAGGAACCGCGAGCACAAGGACACACCTTCCCACCAGA
CATATCGACGATTTGGGCCACACCCCGCTATCGCAGCTCACCTCTCTTTT
GCAGCAAAAGCTACCAGACCGGCTTCCGCCGTCGCAGCAGCAGCAGTCTC
AACAACAAGAGCAGCAGCAGCAGCAGGAAGCCGCCTGCCCTGGCAAGACC
AAGACAGACCTGACGGCCTCAGCACCTACATTCTGTCTGGCGACACAACG
ACCTTCCTCCTCCTCCTCGTCTTTCTCCGCTTCCCCCGCGCGGACACACG
CTTGCCCAACGCTCGGTCCCGTCCCAATCCATTCACAAGCAGCGCGCCAC
CTCCCTCCGCACTACACACCCGCCCAAGTTATGATGTATGCCCAGCAAAA
CCGTTACGGTTCCCCCCCCCCTCCTCCCTCCCTTGCCGCCCAGTCCTCGG
CAGGCCACGGAGGCGGCAATATCTCCTATCATGGACCATCTGGCATAATC
AGTCGCCATCCTTCCCCCCCTGCGCTTGCTAACGGGAACTCTATCATTCG
CATTGCAGCCTACCCCCCTCCTCCACCGCACGCGCAAACCCAACCCCCTC
CTGCTTCAGTGCACTACCACCACCCAGCCCACACTAGTGCTGCACCTGCT
GCTGGCGCCGGACTTTATCATTGCGCGGCCACCTCACACTCTAACCACCA
CCATGCTCAAGCACAGGCGCCAGTGAACGCCCCTCACGGTGGATATGGAC
ACAGTCACGGACAACATGGGCCAGGAACGGTGCCATCACGCTTTCAGAGC
CCTCTGCATCCACAGCTTCATTCCCACCATCATCACCACCACCCTCACTA
TCCGCCGCATCATGGATATCATTGA
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Synonyms
Publications