jgi.p|Nanoce1779_2|594695, mRNA_6352 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594695
Unique Name	mRNA_6352
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1558
Alignment location	scaffold_15:405208..406765 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594781
Track	FilteredModels2
ProteinId	594695

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:405208..406765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594695	gene_6352	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594695	mRNA_6352-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6352	CDS_6352	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:405208..406765+
coding sequence from alignment at scaffold_15:405208..406765+

mRNA sequence

>mRNA_6352 ID=mRNA_6352|Name=jgi.p|Nanoce1779_2|594695|organism=Nannochloropsis oceanica|type=mRNA|length=1558bp
ACCTGGGCCACAATCAGCGGCAGTAGCGGTGGCAGCAGTAGGAGCAGCGG
GGACGGAGGGAGGGAAGGAAGGAGGGAAAGACGGTTATATTTGGCCTCCT
CCTGTACGCCCGGGCTTCCAACGTCTTCCCATCGAGGAAGTAAGAGACGG
AAAATACGTGACGAAAGCACAGTGGCAGCAGCAGCAGCAGCGTCAGGGGT
CGAGTAAGATGGATGGCAGCAGTGCCAAAAGTAGTAGCAGCAAAAACCAC
AGCAGCAACAGAAACGACCGAGCTCATATTTTGAAAGAACAAGGGAACAA
TGCTTTGTTAGAAAAAAACTACCATTCCGCCATAAAGCACTATACTGAAG
CGATTGCCGCCGATGCCGCCAACAGCGACAGCAGCAACAGTTCCACCACC
ACTTATTTCAGCGAAAGCAACCACAATACCAGCCGCAGCAGCACCGCCAC
CACCACCACTAAGCTTTCCCTCATCCTGTACAATAATCGCGCACAGGCCC
ACCTCAAACTCGAACGATGGGAGGAGGCTTTCCGAGATGCCTCATTCGTC
CTCGACCAGGACCCGGGAAATATTAAAGCCCGATTCAGGAAGGGAAAGGC
TTTGTGTAGAGGAGGAGCAGAATGCTTGGCAACAGTGGAGGCATTGTGGA
AGAAGAAGGAGGCAGGGAAGGAGGCGAGGGAAGAGGTATTGAGAGCGAGA
GAGAAGGAAGCGGAGAGCATGTGTGTTGTTCGGAAACAAGGGATGGTGGG
AAGGGCGAAGGAGGGATTGGAAAATGCTGTGAAGGAGATGAACATGATTC
TTGCGGTAGAAAGCGGCAACGCGGAGGCCCAAAAGGAGAGACGGTTGGCC
AAGTCGCTGTTGAGTCAGTATCAACAGCTTTTTAAACAAGTAGGACATAT
GGGCGCTGCTGGAGTGGTAGGCGCGTCATCCATCCCTCCCTCCTCCTCGC
CGCATCCTCCCCCTAATGAACTCAAAACAATTTTGGCAGCGCACCGGGCG
GAGATGGCCGGTGAAGAACGAGGGAAGGAGGGAGGAACCTCTTCCATGAT
GCAAGAAGTGACGACGCGACCTCGAGTCCCACCTGTGGAAGCTTTTCGAA
AAATAGCCGTGGTGGAGGAAGGGAGAAGACAAGAGCAAGATGAACAACAA
GAGCGACGTCGTCAAGGACAGCAGCTACCCATAACCCCACTCAAAAACAG
TCATTCCTCCATTTTTCCCTCCTCCTCCTCCTCCTCTGTTTTCTCCTCCG
TTTCCTCCCCCCTTTCTTCCGGAAAGAAGAAAATCCCCCCCCCCCCAACA
AGCATCTCCGAGCTCGAGACACACTGGCGAACCTTGAAAAAGGGCGGAGA
TTCAGGTTCCACCGCTCGTCTCGCCGCTTACCTCTCCTCATTCCGTCCCC
AAACCTTCTCAAAAGTCATCAAAAGAGTCACAAGCGAGGACACAATTAGT
GAGATATACGCAGTGTTAGCCAGAGAACTGTGTAAGGAAGGGGAGGGGGG
AGGGATGGAGGGGAGGAGGGAGGTGGTAAAGAGGGTGTTGGAGGGGATGG
CAGGGGCG

protein sequence of jgi.p|Nanoce1779_2|594695

>mRNA_6352-protein ID=mRNA_6352-protein|Name=jgi.p|Nanoce1779_2|594695|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MDGSSAKSSSSKNHSSNRNDRAHILKEQGNNALLEKNYHSAIKHYTEAIA
ADAANSDSSNSSTTTYFSESNHNTSRSSTATTTTKLSLILYNNRAQAHLK
LERWEEAFRDASFVLDQDPGNIKARFRKGKALCRGGAECLATVEALWKKK
EAGKEAREEVLRAREKEAESMCVVRKQGMVGRAKEGLENAVKEMNMILAV
ESGNAEAQKERRLAKSLLSQYQQLFKQVGHMGAAGVVGASSIPPSSSPHP
PPNELKTILAAHRAEMAGEERGKEGGTSSMMQEVTTRPRVPPVEAFRKIA
VVEEGRRQEQDEQQERRRQGQQLPITPLKNSHSSIFPSSSSSSVFSSVSS
PLSSGKKKIPPPPTSISELETHWRTL

mRNA from alignment at scaffold_15:405208..406765+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6352 ID=mRNA_6352|Name=jgi.p|Nanoce1779_2|594695|organism=Nannochloropsis oceanica|type=mRNA|length=1558bp|location=Sequence derived from alignment at scaffold_15:405208..406765+ (Nannochloropsis oceanica)
ACCTGGGCCACAATCAGCGGCAGTAGCGGTGGCAGCAGTAGGAGCAGCGG
GGACGGAGGGAGGGAAGGAAGGAGGGAAAGACGGTTATATTTGGCCTCCT
CCTGTACGCCCGGGCTTCCAACGTCTTCCCATCGAGGAAGTAAGAGACGG
AAAATACGTGACGAAAGCACAGTGGCAGCAGCAGCAGCAGCGTCAGGGGT
CGAGTAAGATGGATGGCAGCAGTGCCAAAAGTAGTAGCAGCAAAAACCAC
AGCAGCAACAGAAACGACCGAGCTCATATTTTGAAAGAACAAGGGAACAA
TGCTTTGTTAGAAAAAAACTACCATTCCGCCATAAAGCACTATACTGAAG
CGATTGCCGCCGATGCCGCCAACAGCGACAGCAGCAACAGTTCCACCACC
ACTTATTTCAGCGAAAGCAACCACAATACCAGCCGCAGCAGCACCGCCAC
CACCACCACTAAGCTTTCCCTCATCCTGTACAATAATCGCGCACAGGCCC
ACCTCAAACTCGAACGATGGGAGGAGGCTTTCCGAGATGCCTCATTCGTC
CTCGACCAGGACCCGGGAAATATTAAAGCCCGATTCAGGAAGGGAAAGGC
TTTGTGTAGAGGAGGAGCAGAATGCTTGGCAACAGTGGAGGCATTGTGGA
AGAAGAAGGAGGCAGGGAAGGAGGCGAGGGAAGAGGTATTGAGAGCGAGA
GAGAAGGAAGCGGAGAGCATGTGTGTTGTTCGGAAACAAGGGATGGTGGG
AAGGGCGAAGGAGGGATTGGAAAATGCTGTGAAGGAGATGAACATGATTC
TTGCGGTAGAAAGCGGCAACGCGGAGGCCCAAAAGGAGAGACGGTTGGCC
AAGTCGCTGTTGAGTCAGTATCAACAGCTTTTTAAACAAGTAGGACATAT
GGGCGCTGCTGGAGTGGTAGGCGCGTCATCCATCCCTCCCTCCTCCTCGC
CGCATCCTCCCCCTAATGAACTCAAAACAATTTTGGCAGCGCACCGGGCG
GAGATGGCCGGTGAAGAACGAGGGAAGGAGGGAGGAACCTCTTCCATGAT
GCAAGAAGTGACGACGCGACCTCGAGTCCCACCTGTGGAAGCTTTTCGAA
AAATAGCCGTGGTGGAGGAAGGGAGAAGACAAGAGCAAGATGAACAACAA
GAGCGACGTCGTCAAGGACAGCAGCTACCCATAACCCCACTCAAAAACAG
TCATTCCTCCATTTTTCCCTCCTCCTCCTCCTCCTCTGTTTTCTCCTCCG
TTTCCTCCCCCCTTTCTTCCGGAAAGAAGAAAATCCCCCCCCCCCCAACA
AGCATCTCCGAGCTCGAGACACACTGGCGAACCTTGAAAAAGGGCGGAGA
TTCAGGTTCCACCGCTCGTCTCGCCGCTTACCTCTCCTCATTCCGTCCCC
AAACCTTCTCAAAAGTCATCAAAAGAGTCACAAGCGAGGACACAATTAGT
GAGATATACGCAGTGTTAGCCAGAGAACTGTGTAAGGAAGGGGAGGGGGG
AGGGATGGAGGGGAGGAGGGAGGTGGTAAAGAGGGTGTTGGAGGGGATGG
CAGGGGCG

Coding sequence (CDS) from alignment at scaffold_15:405208..406765+

>mRNA_6352 ID=mRNA_6352|Name=jgi.p|Nanoce1779_2|594695|organism=Nannochloropsis oceanica|type=CDS|length=1129bp|location=Sequence derived from alignment at scaffold_15:405208..406765+ (Nannochloropsis oceanica)
ATGGATGGCAGCAGTGCCAAAAGTAGTAGCAGCAAAAACCACAGCAGCAA
CAGAAACGACCGAGCTCATATTTTGAAAGAACAAGGGAACAATGCTTTGT
TAGAAAAAAACTACCATTCCGCCATAAAGCACTATACTGAAGCGATTGCC
GCCGATGCCGCCAACAGCGACAGCAGCAACAGTTCCACCACCACTTATTT
CAGCGAAAGCAACCACAATACCAGCCGCAGCAGCACCGCCACCACCACCA
CTAAGCTTTCCCTCATCCTGTACAATAATCGCGCACAGGCCCACCTCAAA
CTCGAACGATGGGAGGAGGCTTTCCGAGATGCCTCATTCGTCCTCGACCA
GGACCCGGGAAATATTAAAGCCCGATTCAGGAAGGGAAAGGCTTTGTGTA
GAGGAGGAGCAGAATGCTTGGCAACAGTGGAGGCATTGTGGAAGAAGAAG
GAGGCAGGGAAGGAGGCGAGGGAAGAGGTATTGAGAGCGAGAGAGAAGGA
AGCGGAGAGCATGTGTGTTGTTCGGAAACAAGGGATGGTGGGAAGGGCGA
AGGAGGGATTGGAAAATGCTGTGAAGGAGATGAACATGATTCTTGCGGTA
GAAAGCGGCAACGCGGAGGCCCAAAAGGAGAGACGGTTGGCCAAGTCGCT
GTTGAGTCAGTATCAACAGCTTTTTAAACAAGTAGGACATATGGGCGCTG
CTGGAGTGGTAGGCGCGTCATCCATCCCTCCCTCCTCCTCGCCGCATCCT
CCCCCTAATGAACTCAAAACAATTTTGGCAGCGCACCGGGCGGAGATGGC
CGGTGAAGAACGAGGGAAGGAGGGAGGAACCTCTTCCATGATGCAAGAAG
TGACGACGCGACCTCGAGTCCCACCTGTGGAAGCTTTTCGAAAAATAGCC
GTGGTGGAGGAAGGGAGAAGACAAGAGCAAGATGAACAACAAGAGCGACG
TCGTCAAGGACAGCAGCTACCCATAACCCCACTCAAAAACAGTCATTCCT
CCATTTTTCCCTCCTCCTCCTCCTCCTCTGTTTTCTCCTCCGTTTCCTCC
CCCCTTTCTTCCGGAAAGAAGAAAATCCCCCCCCCCCCAACAAGCATCTC
CGAGCTCGAGACACACTGGCGAACCTTGA

Synonyms

Publications