jgi.p|Nanoce1779_2|530183, mRNA_6351 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530183
Unique NamemRNA_6351
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length918
Alignment locationscaffold_15:403904..404821 +

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Properties
Property NameValue
TranscriptId530269
TrackFilteredModels2
ProteinId530183
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:403904..404821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530183gene_6351Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530183mRNA_6351-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6351CDS_6351Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6351 ID=mRNA_6351|Name=jgi.p|Nanoce1779_2|530183|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ATGGATATTGTTTCTGAACTGCTGTTGGCCCCGTACCCAGCCGATGAGCG
TTCCCCCATCCCCATTACTACCGACCTGCTCGACTTCGATTTTATCCAAA
ACTGCGACGATCCCAAGGTTATCCGTTGCATCCTCCGTCGGCTCCAGGGC
AGACAAGATGGTGTCTACCCCGATTTAGAACGGGAAACATTGGACAGGCT
AGTGCTATTGTCCCCTACCCGAGTCCAGGCCCAAGTGAAGGCGTTGCGGG
CGCAGCCGTGCCCGGTAGAGGTCGCCAAGGAGGAAGAGATTTTGCAGGAG
TGGAGTGATGAGATGGAAAGAAAAGATGCCGCGATGGGGATGAAGCGTGG
TGTTGCTGTTGGGAGTAATAGAATGAGGAATGAACCAGGAGTGGTGGTGG
TAGAGTCGAGTAGTCCCCCTTCCCGGTCTGCCAGGACGATTATTACGATG
ACGACGACGAATTCGGGCAGTGCTACAGCACTACCGATTGCAACGGCAAC
AACAGCAGCACCAGCAGGAACCAAAGCATCAGCAACAGCAATCATGGCAG
TAAAAGAGAGGGAGGAGGAATGTGAGGACGAGGACGAGGACGAAAAGGTC
CAAGCTGCGGAAAAGGAAATAAGGGACATGAGCGAATGCCTCCGCCACAC
CCCTCTCTCGCTCCGTCCCCTCCTCGCCGCCCAAAAGAAGGAAGACGGCA
ACAAGCTACTCAAGCAGGGGGAATATTCCGAAGCCCGCGCCGCTTACACT
CTGTCACTCGGCCACGCTCCTGAAAATGCTGTGGTGTGTGCGAATCGGGC
CTTGGCCATGCTGAAACAGGGAATTTTTGACCAAGCTGAAGCGGACTGCA
CAATGGCCATAAATAGAGAGCCCTCATATGCCAAGGCTTGGCTTCGACGA
GGGATGATAAGGCACAAA
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protein sequence of jgi.p|Nanoce1779_2|530183

>mRNA_6351-protein ID=mRNA_6351-protein|Name=jgi.p|Nanoce1779_2|530183|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MDIVSELLLAPYPADERSPIPITTDLLDFDFIQNCDDPKVIRCILRRLQG
RQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQE
WSDEMERKDAAMGMKRGVAVGSNRMRNEPGVVVVESSSPPSRSARTIITM
TTTNSGSATALPIATATTAAPAGTKASATAIMAVKEREEECEDEDEDEKV
QAAEKEIRDMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYT
LSLGHAPENAVVCANRALAMLKQGIFDQAEADCTMAINREPSYAKAWLRR
GMIRHK
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mRNA from alignment at scaffold_15:403904..404821+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6351 ID=mRNA_6351|Name=jgi.p|Nanoce1779_2|530183|organism=Nannochloropsis oceanica|type=mRNA|length=918bp|location=Sequence derived from alignment at scaffold_15:403904..404821+ (Nannochloropsis oceanica)
ATGGATATTGTTTCTGAACTGCTGTTGGCCCCGTACCCAGCCGATGAGCG
TTCCCCCATCCCCATTACTACCGACCTGCTCGACTTCGATTTTATCCAAA
ACTGCGACGATCCCAAGGTTATCCGTTGCATCCTCCGTCGGCTCCAGGGC
AGACAAGATGGTGTCTACCCCGATTTAGAACGGGAAACATTGGACAGGCT
AGTGCTATTGTCCCCTACCCGAGTCCAGGCCCAAGTGAAGGCGTTGCGGG
CGCAGCCGTGCCCGGTAGAGGTCGCCAAGGAGGAAGAGATTTTGCAGGAG
TGGAGTGATGAGATGGAAAGAAAAGATGCCGCGATGGGGATGAAGCGTGG
TGTTGCTGTTGGGAGTAATAGAATGAGGAATGAACCAGGAGTGGTGGTGG
TAGAGTCGAGTAGTCCCCCTTCCCGGTCTGCCAGGACGATTATTACGATG
ACGACGACGAATTCGGGCAGTGCTACAGCACTACCGATTGCAACGGCAAC
AACAGCAGCACCAGCAGGAACCAAAGCATCAGCAACAGCAATCATGGCAG
TAAAAGAGAGGGAGGAGGAATGTGAGGACGAGGACGAGGACGAAAAGGTC
CAAGCTGCGGAAAAGGAAATAAGGGACATGAGCGAATGCCTCCGCCACAC
CCCTCTCTCGCTCCGTCCCCTCCTCGCCGCCCAAAAGAAGGAAGACGGCA
ACAAGCTACTCAAGCAGGGGGAATATTCCGAAGCCCGCGCCGCTTACACT
CTGTCACTCGGCCACGCTCCTGAAAATGCTGTGGTGTGTGCGAATCGGGC
CTTGGCCATGCTGAAACAGGGAATTTTTGACCAAGCTGAAGCGGACTGCA
CAATGGCCATAAATAGAGAGCCCTCATATGCCAAGGCTTGGCTTCGACGA
GGGATGATAAGGCACAAA
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Coding sequence (CDS) from alignment at scaffold_15:403904..404821+

>mRNA_6351 ID=mRNA_6351|Name=jgi.p|Nanoce1779_2|530183|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_15:403904..404821+ (Nannochloropsis oceanica)
ATGGATATTGTTTCTGAACTGCTGTTGGCCCCGTACCCAGCCGATGAGCG
TTCCCCCATCCCCATTACTACCGACCTGCTCGACTTCGATTTTATCCAAA
ACTGCGACGATCCCAAGGTTATCCGTTGCATCCTCCGTCGGCTCCAGGGC
AGACAAGATGGTGTCTACCCCGATTTAGAACGGGAAACATTGGACAGGCT
AGTGCTATTGTCCCCTACCCGAGTCCAGGCCCAAGTGAAGGCGTTGCGGG
CGCAGCCGTGCCCGGTAGAGGTCGCCAAGGAGGAAGAGATTTTGCAGGAG
TGGAGTGATGAGATGGAAAGAAAAGATGCCGCGATGGGGATGAAGCGTGG
TGTTGCTGTTGGGAGTAATAGAATGAGGAATGAACCAGGAGTGGTGGTGG
TAGAGTCGAGTAGTCCCCCTTCCCGGTCTGCCAGGACGATTATTACGATG
ACGACGACGAATTCGGGCAGTGCTACAGCACTACCGATTGCAACGGCAAC
AACAGCAGCACCAGCAGGAACCAAAGCATCAGCAACAGCAATCATGGCAG
TAAAAGAGAGGGAGGAGGAATGTGAGGACGAGGACGAGGACGAAAAGGTC
CAAGCTGCGGAAAAGGAAATAAGGGACATGAGCGAATGCCTCCGCCACAC
CCCTCTCTCGCTCCGTCCCCTCCTCGCCGCCCAAAAGAAGGAAGACGGCA
ACAAGCTACTCAAGCAGGGGGAATATTCCGAAGCCCGCGCCGCTTACACT
CTGTCACTCGGCCACGCTCCTGAAAATGCTGTGGTGTGTGCGAATCGGGC
CTTGGCCATGCTGAAACAGGGAATTTTTGACCAAGCTGAAGCGGACTGCA
CAATGGCCATAAATAGAGAGCCCTCATATGCCAAGGCTTGGCTTCGACGA
GGGATGATAAGGCACAAA
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Synonyms
Publications