jgi.p|Nanoce1779_2|594687, mRNA_6350 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594687
Unique NamemRNA_6350
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1189
Alignment locationscaffold_15:401443..403527 -

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Properties
Property NameValue
TranscriptId594773
TrackFilteredModels2
ProteinId594687
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:401443..403527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594687gene_6350Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594687mRNA_6350-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6350CDS_6350Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6350 ID=mRNA_6350|Name=jgi.p|Nanoce1779_2|594687|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp
ACAGCAACAATAACAAGCAAGGCCTCTTAACGTGCCAAGCTATGTCGCGC
AGCCGCTCGCGTTCTTCCGAGAGAGAAAGAGGTGGCAGTACCAGCGGCAT
GCGGCGACGACGGGACGATGACCGTGACCGGGGGAGGGACCGAAATCACA
AGAGGAGGGAGGACAGCGGGAGCCGCAGCAGGGAGCGCGATCGCGATGGA
CGCAAGAAGCACCAGCATAGAGACAAGGAACGTGGAAAGGACAAGAAGAA
GTATTCGTCGCGTCGCGATGGTTCTGGTGGAGGAGGAAGCGGCAGTGGCA
AGCGTCGTCGGCGGTCACCCTCCTCATCCTCTTCCTTCTCGTCCTTGTCC
CCTTCTCCCCTACGCAGCAAGACCCAAACCGGAGGGAGAGCACATCCCAA
ACCTCCTTCCACCACCGCATCCACAAGTGCTATGCTATATTCCCGTGCTT
CTTTAAAAGAGCAACGGATCGTTGATGAGGAGGTGATTCGTCGGTTTGAT
GATCGAATCAAGGAGTTATTAGAAGAAAAAGTTTCTGTGTATTGCGAGTC
CAGCGAGTTCAAAACCTTCCTCGACGAAATGAAGAAACGGAAACGGGAAG
AGATGCTGAGTAAAATTGACCAGGACATTCGTGCAGAGCGTGAGGCAATG
CTGGCGTTAGAAAGGGAGAAAGCCGAAGCAGCGGCGGAGGAGCAGCGGAA
GTTGGATGAGGTACTGGAGGAGAATCGACGGAAGGTGGAAGAGCAGCGAC
GATTGGAGATGGAGGAAAAAGCAAGGCAGGACGAACAGAAACTGATGCAG
ATTCAGCGACGGCAACAACAGGAGGAGGAGGCAGAACGGCGGAGGGTGGC
AGAGGAGGTGGCCTTGCAGAAGGAGCAAGAGAAGATTCTCCGTCGACCAC
AGACGAAGATATCGCTGTCGCTAAAAAAGAAGGGGCCCTTGTTCTAGCCG
CTGTCACCGCGAGCGCAAGTGGGGAGGGAAGCAACAAAAGCAAAGCGCGG
GAGTGGAGGAAGTAGACAGGGTCTAGCTGCGATCCACACGACGACCGCCC
TGATGATAGCAGCGAGTTCTTGCGTGTAAAAAGGAAAGGGCGGGTGGAGG
AGGAGGGACATGATAGCGGAGGTACACGAGAAGTAGGAGGATTTAGAGGA
ACAGAGCTGAGATTGCAAAAAAATGTCCGTTTGTGAAGG
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protein sequence of jgi.p|Nanoce1779_2|594687

>mRNA_6350-protein ID=mRNA_6350-protein|Name=jgi.p|Nanoce1779_2|594687|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MSRSRSRSSERERGGSTSGMRRRRDDDRDRGRDRNHKRREDSGSRSRERD
RDGRKKHQHRDKERGKDKKKYSSRRDGSGGGGSGSGKRRRRSPSSSSSFS
SLSPSPLRSKTQTGGRAHPKPPSTTASTSAMLYSRASLKEQRIVDEEVIR
RFDDRIKELLEEKVSVYCESSEFKTFLDEMKKRKREEMLSKIDQDIRAER
EAMLALEREKAEAAAEEQRKLDEVLEENRRKVEEQRRLEMEEKARQDEQK
LMQIQRRQQQEEEAERRRVAEEVALQKEQEKILRRPQTKISLSLKKKGPL
F*
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mRNA from alignment at scaffold_15:401443..403527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6350 ID=mRNA_6350|Name=jgi.p|Nanoce1779_2|594687|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp|location=Sequence derived from alignment at scaffold_15:401443..403527- (Nannochloropsis oceanica)
ACAGCAACAATAACAAGCAAGGCCTCTTAACGTGCCAAGCTATGTCGCGC
AGCCGCTCGCGTTCTTCCGAGAGGTAAGAGACGCTGATGAATATGCTTGC
TGTTTGCTTTCTGGACATCCCACGAGACGCGCTCCTCGCACCCCACCCAC
CCACACTCCACATTTACGCACAATAAACGACACAGAGAAAGAGGTGGCAG
TACCAGCGGCATGCGGCGACGACGGGACGATGACCGTGACCGGGGGAGGG
ACCGAAATCACAAGAGGAGGGAGGACAGCGGGAGCCGCAGCAGGGAGCGC
GATCGCGATGGACGCAAGAAGCACCAGCATAGAGACAAGGAACGTGGAAA
GGACAAGAAGAAGTATTCGTCGCGTCGCGATGGTTCTGGTGGAGGAGGAA
GCGGCAGTGGCAAGCGTCGTCGGCGGTCACCCTCCTCATCCTCTTCCTTC
TCGTCCTTGTCCCCTTCTCCCCTACGCAGCAAGACCCAAACCGGAGGGAG
AGCACATCCCAAACCTCCTTCCACCACCGCATCCACAAGTGCTATGCTAT
ATTCCCGTGCTTCTTTAAAAGAGCAACGGATCGTTGATGAGGAGGTGATT
CGTCGGTTTGATGATCGAATCAAGGAGTTATTAGAAGAAAAAGTTTCTGT
GTATTGCGAGTCCAGCGAGTTCAAAACCTTCCTCGACGAAATGAAGAAAC
GGAAACGGGAAGAGATGCTGAGTAAAATTGACCAGGACATTCGTGCAGAG
CGTGAGGCAATGCTGGCGTTAGAAAGGGAGAAAGCCGAAGCAGCGGCGGA
GGAGCAGCGGAAGTTGGATGAGGTACTGGAGGAGAATCGACGGAAGGTGG
AAGAGCAGCGACGATTGGAGATGGAGGAAAAAGCAAGGCAGGACGAACAG
AAACTGATGCAGATTCAGCGACGGCAACAACAGGAGGAGGAGGCAGAACG
GCGGAGGGTGGTGAGTGTTGGAAGGGAAGGGGGGTAGAGGTTTGGTGACT
TGCGCCATTAATTCTGAGTGAAATTGCGAAGAAGACAAGCTGCCAATGCA
GGCAGCACTTTGGGCCGCCTGCTTTGGAGGTGGACTATTCTGTCTTATTC
CTTTCAAATGTATGAGTGTCTGGGGAGCACTTGTCCCCCCTTTTCCTGTC
TTTCCTCCTCCTCCTGCCCCCCCTTCCCCCCTCCTTCTATTTCTTTTCGC
CTCGGAGGTAAGCGGCACCGAGCAACAGCAGAGCAGCAACAGTAGTAGCA
GCATCAAGAAGGGGAAGTAGATTCCAGACCAGCATCCATAAGGGGCATGC
CTCGAGGAGATACCGTCTCAGGTGTCTCAGGGCGCTATCAGAGCTCGGTT
TTGCTCTTGTGCTTCCGCGGTTTCAATTGTGCAGCTTGAGCAACGACGTG
AAAGAAGATCACCGAGAAGACGAGGGCGCCCCTTTCGAACCTCCAAACGC
GCAGACAGAATTGTGTCATGGCCTTCGCCGCTGGCTCCATCCTCACTGTG
ATCGTGTACACAGACAAATCACACACAGGCGTGCCTCCCCTTCTTGCCTC
CCCTCCTCCCTATTCACCCTATTCATTTTCATTTTCACCTCTCCCCTGTT
GTCCTCTCACGCGTGATCGTTTCTCACTCCTCTCTTTTCTTCCCCATGTT
ACTTTCCTCCCTACCTCTCCTTCCTCCTCTTCCTTCCTCCCTCCCCTCCC
TATCCTCCCTTCGTGCCCCTTCCCCTTCTTTTCTGTTTGAGTAGGCAGAG
GAGGTGGCCTTGCAGAAGGAGCAAGAGAAGATTCTCCGTCGACCACAGAC
GAAGATATCGCTGTCGCTAAAAAAGAAGGGGCCCTTGTTCTAGCCGCTGT
CACCGCGAGCGCAAGTGGGGAGGGAAGCAACAAAAGCAAAGCGCGGGAGT
GGAGGAAGTAGACAGGGTCTAGCTGCGATCCACACGACGACCGCCCTGAT
GATAGCAGCGAGTTCTTGCGTGTAAAAAGGAAAGGGCGGGTGGAGGAGGA
GGGACATGATAGCGGAGGTACACGAGAAGTAGGAGGATTTAGAGGAACAG
AGCTGAGATTGCAAAAAAATGTCCGTTTGTGAAGG
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Coding sequence (CDS) from alignment at scaffold_15:401443..403527-

>mRNA_6350 ID=mRNA_6350|Name=jgi.p|Nanoce1779_2|594687|organism=Nannochloropsis oceanica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_15:401443..403527- (Nannochloropsis oceanica)
GCAGAGGAGGTGGCCTTGCAGAAGGAGCAAGAGAAGATTCTCCGTCGACC
ACAGACGAAGATATCGCTGTCGCTAAAAAAGAAGGGGCCCTTGTTCTAGA
GAAAGAGGTGGCAGTACCAGCGGCATGCGGCGACGACGGGACGATGACCG
TGACCGGGGGAGGGACCGAAATCACAAGAGGAGGGAGGACAGCGGGAGCC
GCAGCAGGGAGCGCGATCGCGATGGACGCAAGAAGCACCAGCATAGAGAC
AAGGAACGTGGAAAGGACAAGAAGAAGTATTCGTCGCGTCGCGATGGTTC
TGGTGGAGGAGGAAGCGGCAGTGGCAAGCGTCGTCGGCGGTCACCCTCCT
CATCCTCTTCCTTCTCGTCCTTGTCCCCTTCTCCCCTACGCAGCAAGACC
CAAACCGGAGGGAGAGCACATCCCAAACCTCCTTCCACCACCGCATCCAC
AAGTGCTATGCTATATTCCCGTGCTTCTTTAAAAGAGCAACGGATCGTTG
ATGAGGAGGTGATTCGTCGGTTTGATGATCGAATCAAGGAGTTATTAGAA
GAAAAAGTTTCTGTGTATTGCGAGTCCAGCGAGTTCAAAACCTTCCTCGA
CGAAATGAAGAAACGGAAACGGGAAGAGATGCTGAGTAAAATTGACCAGG
ACATTCGTGCAGAGCGTGAGGCAATGCTGGCGTTAGAAAGGGAGAAAGCC
GAAGCAGCGGCGGAGGAGCAGCGGAAGTTGGATGAGGTACTGGAGGAGAA
TCGACGGAAGGTGGAAGAGCAGCGACGATTGGAGATGGAGGAAAAAGCAA
GGCAGGACGAACAGAAACTGATGCAGATTCAGCGACGGCAACAACAGGAG
GAGGAGGCAGAACGGCGGAGGGTGATGTCGCGCAGCCGCTCGCGTTCTTC
CGAGAGGCAGAGGAGGTGGCCTTGCAGAAGGAGCAAGAGAAGATTCTCCG
TCGACCACAGACGAAGATATCGCTGTCGCTAAAAAAGAAGGGGCCCTTGT
TCTAGAGAAAGAGGTGGCAGTACCAGCGGCATGCGGCGACGACGGGACGA
TGACCGTGACCGGGGGAGGGACCGAAATCACAAGAGGAGGGAGGACAGCG
GGAGCCGCAGCAGGGAGCGCGATCGCGATGGACGCAAGAAGCACCAGCAT
AGAGACAAGGAACGTGGAAAGGACAAGAAGAAGTATTCGTCGCGTCGCGA
TGGTTCTGGTGGAGGAGGAAGCGGCAGTGGCAAGCGTCGTCGGCGGTCAC
CCTCCTCATCCTCTTCCTTCTCGTCCTTGTCCCCTTCTCCCCTACGCAGC
AAGACCCAAACCGGAGGGAGAGCACATCCCAAACCTCCTTCCACCACCGC
ATCCACAAGTGCTATGCTATATTCCCGTGCTTCTTTAAAAGAGCAACGGA
TCGTTGATGAGGAGGTGATTCGTCGGTTTGATGATCGAATCAAGGAGTTA
TTAGAAGAAAAAGTTTCTGTGTATTGCGAGTCCAGCGAGTTCAAAACCTT
CCTCGACGAAATGAAGAAACGGAAACGGGAAGAGATGCTGAGTAAAATTG
ACCAGGACATTCGTGCAGAGCGTGAGGCAATGCTGGCGTTAGAAAGGGAG
AAAGCCGAAGCAGCGGCGGAGGAGCAGCGGAAGTTGGATGAGGTACTGGA
GGAGAATCGACGGAAGGTGGAAGAGCAGCGACGATTGGAGATGGAGGAAA
AAGCAAGGCAGGACGAACAGAAACTGATGCAGATTCAGCGACGGCAACAA
CAGGAGGAGGAGGCAGAACGGCGGAGGGTGATGTCGCGCAGCCGCTCGCG
TTCTTCCGAGAGGCAGAGGAGGTGGCCTTGCAGAAGGAGCAAGAGAAGAT
TCTCCGTCGACCACAGACGAAGATATCGCTGTCGCTAAAAAAGAAGGGGC
CCTTGTTCTAGAGAAAGAGGTGGCAGTACCAGCGGCATGCGGCGACGACG
GGACGATGACCGTGACCGGGGGAGGGACCGAAATCACAAGAGGAGGGAGG
ACAGCGGGAGCCGCAGCAGGGAGCGCGATCGCGATGGACGCAAGAAGCAC
CAGCATAGAGACAAGGAACGTGGAAAGGACAAGAAGAAGTATTCGTCGCG
TCGCGATGGTTCTGGTGGAGGAGGAAGCGGCAGTGGCAAGCGTCGTCGGC
GGTCACCCTCCTCATCCTCTTCCTTCTCGTCCTTGTCCCCTTCTCCCCTA
CGCAGCAAGACCCAAACCGGAGGGAGAGCACATCCCAAACCTCCTTCCAC
CACCGCATCCACAAGTGCTATGCTATATTCCCGTGCTTCTTTAAAAGAGC
AACGGATCGTTGATGAGGAGGTGATTCGTCGGTTTGATGATCGAATCAAG
GAGTTATTAGAAGAAAAAGTTTCTGTGTATTGCGAGTCCAGCGAGTTCAA
AACCTTCCTCGACGAAATGAAGAAACGGAAACGGGAAGAGATGCTGAGTA
AAATTGACCAGGACATTCGTGCAGAGCGTGAGGCAATGCTGGCGTTAGAA
AGGGAGAAAGCCGAAGCAGCGGCGGAGGAGCAGCGGAAGTTGGATGAGGT
ACTGGAGGAGAATCGACGGAAGGTGGAAGAGCAGCGACGATTGGAGATGG
AGGAAAAAGCAAGGCAGGACGAACAGAAACTGATGCAGATTCAGCGACGG
CAACAACAGGAGGAGGAGGCAGAACGGCGGAGGGTGATGTCGCGCAGCCG
CTCGCGTTCTTCCGAGAG
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Synonyms
Publications