jgi.p|Nanoce1779_2|523146, mRNA_635 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523146
Unique NamemRNA_635
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1011
Alignment locationscaffold_2:57303..58445 -

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Properties
Property NameValue
TranscriptId523232
TrackFilteredModels2
ProteinId523146
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:57303..58445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523146gene_635Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523146mRNA_635-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_635CDS_635Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_635 ID=mRNA_635|Name=jgi.p|Nanoce1779_2|523146|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
ATGGATTACTTTGGAGGCGGGGAGGGAGGAAATGAGGGGGTGTACGGGTA
TGGCTTAGGAGGGGGAGGAGGATGTGAGAGGAATAACTTTGATTTTAGGG
CGGTCAAGGCGATTGTGGGAACATGCCAGGAGTTGGAGAAGGAGTACTTT
CGTCTCAATGAGGTGCCAGACCCTGACTCTGTGCGGCCTGAGCCTGTCCT
TCGGCGTGCGCTTGCCCGTTTGGTGCGTCGGTTTGAAGCGCTTCCGCCAG
TGCAAGGAGCGAGAGAGGGGGATTACAAGGAGTATTTGTGGACCCAATTG
AAGGCCATCCGGCAGGACATGCTGATCCAGAACCTGAAAAACGCCTTTGC
GGTGGAGGTGTACGAGGCCCATGCGAGGATTGCCCTGGCCTGCAGTGATT
TGAACGAGTATAACCAGTGCCAGACGCAGTTGATGGAGTTGTACAGGGAG
AAGGACTTGCCGGCTTCGGCTCGAGACAATGCCCCCGAATTTACGGCCTA
CCGGGTGCTGTACTACGTTTATCTGCAATCCAATCCCAAGTACTCCGACG
GCGACTCGGGCGTGCTCCGCGTCCTGGCCCAGCTCTCGGACAGCGACAAG
GCTACACAGGCAGTGCAGCATGCCCTCGAGGTGCGGAGAGCATGTGTACT
GGGAAACTACCACCGCTTGGGGGTATTGTACCGGCAGGCCCCGGGGGAGG
GGAGGAGGATCATGCGGCACTTTATGGGGCAGGCAAGGGTGAGGGCGATG
CAAGTGATGCTGAAGGCGTACAAGCCCACCGTGCCCAGCGCGTGGGTGGA
GAGGGAGCTGGGGTTTGGAGCGAGGGATGGAGGTGAAGGGAAGGTAGGGG
GGGAAGAGGAGGAGAAAGAGGAGGAGGAGGAGGCGCGAGTGTTCTTGGAG
AGGGTGGGGTGGGTTATGGTGAAGAAGGGGGGCGAGGAGGACGAGGGTAT
TTGGGATATGAAGGCTTCCAAGGTGGACCCGGCGGCAGCGGTTACCCGGA
CGCTCATGTAA
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protein sequence of jgi.p|Nanoce1779_2|523146

>mRNA_635-protein ID=mRNA_635-protein|Name=jgi.p|Nanoce1779_2|523146|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MDYFGGGEGGNEGVYGYGLGGGGGCERNNFDFRAVKAIVGTCQELEKEYF
RLNEVPDPDSVRPEPVLRRALARLVRRFEALPPVQGAREGDYKEYLWTQL
KAIRQDMLIQNLKNAFAVEVYEAHARIALACSDLNEYNQCQTQLMELYRE
KDLPASARDNAPEFTAYRVLYYVYLQSNPKYSDGDSGVLRVLAQLSDSDK
ATQAVQHALEVRRACVLGNYHRLGVLYRQAPGEGRRIMRHFMGQARVRAM
QVMLKAYKPTVPSAWVERELGFGARDGGEGKVGGEEEEKEEEEEARVFLE
RVGWVMVKKGGEEDEGIWDMKASKVDPAAAVTRTLM*
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mRNA from alignment at scaffold_2:57303..58445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_635 ID=mRNA_635|Name=jgi.p|Nanoce1779_2|523146|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp|location=Sequence derived from alignment at scaffold_2:57303..58445- (Nannochloropsis oceanica)
ATGGATTACTTTGGAGGCGGGGAGGGAGGAAATGAGGGGGTGTACGGGTA
TGGCTTAGGAGGGGGAGGAGGATGTGAGAGGAATAACTTTGATTTTAGGG
CGGTCAAGGCGATTGTGGGAACATGCCAGGAGTTGGAGAAGGAGTACTTT
CGTCTCAATGAGGTGCCAGACCCTGACTCTGTGCGGCCTGAGCCTGTCCT
TCGGCGTGCGCTTGCCCGTTTGGTGCGTCGGTTTGAAGCGCTTCCGCCAG
TGCAAGGAGCGAGAGAGGGGGATTACAAGGAGTATTTGTGGACCCAATTG
AAGGCCATCCGGCAGGACATGCTGATCCAGAACCTGAAAAACGCCTTTGC
GGTGGAGGTGTACGAGGCCCATGCGAGGATTGCCCTGGCCTGCAGTGATT
TGAACGAGTATAACCAGTGCCAGACGCAGTTGATGGAGTTGTACAGGGAG
AAGGACTTGCCGGCTTCGGCTCGAGACAATGTATGTTTATCGCGTCCCCC
CCCCCCCTTGGATTTTATCTCCCTCTATTTTCTTTTTGTAAAAAGTTACC
CTGTTCCCTCAGCGCTCATTCGATCCTCCTTACGTCCCTCCGTTCCTCCC
TTCTTCCACCAGGCCCCCGAATTTACGGCCTACCGGGTGCTGTACTACGT
TTATCTGCAATCCAATCCCAAGTACTCCGACGGCGACTCGGGCGTGCTCC
GCGTCCTGGCCCAGCTCTCGGACAGCGACAAGGCTACACAGGCAGTGCAG
CATGCCCTCGAGGTGCGGAGAGCATGTGTACTGGGAAACTACCACCGCTT
GGGGGTATTGTACCGGCAGGCCCCGGGGGAGGGGAGGAGGATCATGCGGC
ACTTTATGGGGCAGGCAAGGGTGAGGGCGATGCAAGTGATGCTGAAGGCG
TACAAGCCCACCGTGCCCAGCGCGTGGGTGGAGAGGGAGCTGGGGTTTGG
AGCGAGGGATGGAGGTGAAGGGAAGGTAGGGGGGGAAGAGGAGGAGAAAG
AGGAGGAGGAGGAGGCGCGAGTGTTCTTGGAGAGGGTGGGGTGGGTTATG
GTGAAGAAGGGGGGCGAGGAGGACGAGGGTATTTGGGATATGAAGGCTTC
CAAGGTGGACCCGGCGGCAGCGGTTACCCGGACGCTCATGTAA
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Coding sequence (CDS) from alignment at scaffold_2:57303..58445-

>mRNA_635 ID=mRNA_635|Name=jgi.p|Nanoce1779_2|523146|organism=Nannochloropsis oceanica|type=CDS|length=2022bp|location=Sequence derived from alignment at scaffold_2:57303..58445- (Nannochloropsis oceanica)
GCCCCCGAATTTACGGCCTACCGGGTGCTGTACTACGTTTATCTGCAATC
CAATCCCAAGTACTCCGACGGCGACTCGGGCGTGCTCCGCGTCCTGGCCC
AGCTCTCGGACAGCGACAAGGCTACACAGGCAGTGCAGCATGCCCTCGAG
GTGCGGAGAGCATGTGTACTGGGAAACTACCACCGCTTGGGGGTATTGTA
CCGGCAGGCCCCGGGGGAGGGGAGGAGGATCATGCGGCACTTTATGGGGC
AGGCAAGGGTGAGGGCGATGCAAGTGATGCTGAAGGCGTACAAGCCCACC
GTGCCCAGCGCGTGGGTGGAGAGGGAGCTGGGGTTTGGAGCGAGGGATGG
AGGTGAAGGGAAGGTAGGGGGGGAAGAGGAGGAGAAAGAGGAGGAGGAGG
AGGCGCGAGTGTTCTTGGAGAGGGTGGGGTGGGTTATGGTGAAGAAGGGG
GGCGAGGAGGACGAGGGTATTTGGGATATGAAGGCTTCCAAGGTGGACCC
GGCGGCAGCGGTTACCCGGACGCTCATGTAAATGGATTACTTTGGAGGCG
GGGAGGGAGGAAATGAGGGGGTGTACGGGTATGGCTTAGGAGGGGGAGGA
GGATGTGAGAGGAATAACTTTGATTTTAGGGCGGTCAAGGCGATTGTGGG
AACATGCCAGGAGTTGGAGAAGGAGTACTTTCGTCTCAATGAGGTGCCAG
ACCCTGACTCTGTGCGGCCTGAGCCTGTCCTTCGGCGTGCGCTTGCCCGT
TTGGTGCGTCGGTTTGAAGCGCTTCCGCCAGTGCAAGGAGCGAGAGAGGG
GGATTACAAGGAGTATTTGTGGACCCAATTGAAGGCCATCCGGCAGGACA
TGCTGATCCAGAACCTGAAAAACGCCTTTGCGGTGGAGGTGTACGAGGCC
CATGCGAGGATTGCCCTGGCCTGCAGTGATTTGAACGAGTATAACCAGTG
CCAGACGCAGTTGATGGAGTTGTACAGGGAGAAGGACTTGCCGGCTTCGG
CTCGAGACAATGCCCCCGAATTTACGGCCTACCGGGTGCTGTACTACGTT
TATCTGCAATCCAATCCCAAGTACTCCGACGGCGACTCGGGCGTGCTCCG
CGTCCTGGCCCAGCTCTCGGACAGCGACAAGGCTACACAGGCAGTGCAGC
ATGCCCTCGAGGTGCGGAGAGCATGTGTACTGGGAAACTACCACCGCTTG
GGGGTATTGTACCGGCAGGCCCCGGGGGAGGGGAGGAGGATCATGCGGCA
CTTTATGGGGCAGGCAAGGGTGAGGGCGATGCAAGTGATGCTGAAGGCGT
ACAAGCCCACCGTGCCCAGCGCGTGGGTGGAGAGGGAGCTGGGGTTTGGA
GCGAGGGATGGAGGTGAAGGGAAGGTAGGGGGGGAAGAGGAGGAGAAAGA
GGAGGAGGAGGAGGCGCGAGTGTTCTTGGAGAGGGTGGGGTGGGTTATGG
TGAAGAAGGGGGGCGAGGAGGACGAGGGTATTTGGGATATGAAGGCTTCC
AAGGTGGACCCGGCGGCAGCGGTTACCCGGACGCTCATGTAAATGGATTA
CTTTGGAGGCGGGGAGGGAGGAAATGAGGGGGTGTACGGGTATGGCTTAG
GAGGGGGAGGAGGATGTGAGAGGAATAACTTTGATTTTAGGGCGGTCAAG
GCGATTGTGGGAACATGCCAGGAGTTGGAGAAGGAGTACTTTCGTCTCAA
TGAGGTGCCAGACCCTGACTCTGTGCGGCCTGAGCCTGTCCTTCGGCGTG
CGCTTGCCCGTTTGGTGCGTCGGTTTGAAGCGCTTCCGCCAGTGCAAGGA
GCGAGAGAGGGGGATTACAAGGAGTATTTGTGGACCCAATTGAAGGCCAT
CCGGCAGGACATGCTGATCCAGAACCTGAAAAACGCCTTTGCGGTGGAGG
TGTACGAGGCCCATGCGAGGATTGCCCTGGCCTGCAGTGATTTGAACGAG
TATAACCAGTGCCAGACGCAGTTGATGGAGTTGTACAGGGAGAAGGACTT
GCCGGCTTCGGCTCGAGACAAT
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Synonyms
Publications