jgi.p|Nanoce1779_2|90603, mRNA_6349 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|90603
Unique Name	mRNA_6349
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1080
Alignment location	scaffold_15:398977..401704 +

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Properties


Property Name	Value
TranscriptId	90689
Track	FilteredModels2
ProteinId	90603

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:398977..401704 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|90603	gene_6349	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|90603	mRNA_6349-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6349	CDS_6349	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:398977..401704+
coding sequence from alignment at scaffold_15:398977..401704+

mRNA sequence

>mRNA_6349 ID=mRNA_6349|Name=jgi.p|Nanoce1779_2|90603|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
AAACACAGGACACCAGCCTCCTTCCCCACCCGCCCACCACCCTCCATCAC
CACCATGCGACGATTGAGCGACTTGGTAAACCCGGTGCTTGGCTTCCTCT
CCCCTTGGAAGGGCTCGGCCAAGGCCACCACCTCCGACCCCATCCCCCGC
GCCTCCTCCTCGGGCAGCAAGAAACCCGCCCCCTCTGCAAGCAAAAAGGC
CTCCAGCACGCCCGCTGCTTCTGCTGCTTCCACTTTGGGGAAGCGTTCCC
GTTCCTCCATTGGAAGCAACAAGGGTGAAACTCCTGCAGCGAAAAAAACA
CATCTTTCCTCGATCAAGAAAAGCGCCCTGAAGAAGTCTGCGGCTAAGAG
TGTGAAGAAGAGCAGCATCGCTACAACTCCCAAATCCAAGAGTAGCGCGA
TGAAGCCTCTCAAGTCTGCGGCCAAGAAGGTGGCTACCCCTCTTGAGAGT
GCTGCGAAGAAGCCCAACACCCCCTCGGCAAGTAGCAAGAAGCCTGCCGC
CACTGTCGCCCCCGCCGCCCCTGCTTCACACAAGAAAAAGAGCGTAACAA
AACCCGTGGTCAAGAAGGCAAAGAAAGTGTCCAAGTGTATGGGTAAACTG
ATAACGAGGGTGAGAAGGGGTATAAAAATGAAACATAAGAGAAAGAATAT
TTTCGTGTTTGTCGTGTGGATGAGTGGATGTATGAATAAGTTTGGTTGAC
ACCAACGGCATGAGGAGAGGAGACGAGTGACGAAAAAAAGTCCCATAAAG
CGTGCAATAAAAAGAGGAAGACAACAACAACAACAACAACAACAACAACA
ACAACAGCCTCGTGGTAACCTTCACAAACGGACATTTTTTTGCAATCTCA
GCTCTGTTCCTCTAAATCCTCCTACTTCTCGTGTACCTCCGCTATCATGT
CCCTCCTCCTCCACCCGCCCTTTCCTTTTTACACGCAAGAACTCGCTGCT
ATCATCAGGGCGGTCGTCGTGTGGATCGCAGCTAGACCCTGTCTACTTCC
TCCACTCCCGCGCTTTGCTTTTGTTGCTTCCCTCCCCACTTGCGCTCGCG
GTGACAGCGGCTAGAACAAGGGCCCCTTCT

protein sequence of jgi.p|Nanoce1779_2|90603

>mRNA_6349-protein ID=mRNA_6349-protein|Name=jgi.p|Nanoce1779_2|90603|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MRRLSDLVNPVLGFLSPWKGSAKATTSDPIPRASSSGSKKPAPSASKKAS
STPAASAASTLGKRSRSSIGSNKGETPAAKKTHLSSIKKSALKKSAAKSV
KKSSIATTPKSKSSAMKPLKSAAKKVATPLESAAKKPNTPSASSKKPAAT
VAPAAPASHKKKSVTKPVVKKAKKVSKCMGKLITRVRRGIKMKHKRKNIF
VFVVWMSGCMNKFG*

mRNA from alignment at scaffold_15:398977..401704+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6349 ID=mRNA_6349|Name=jgi.p|Nanoce1779_2|90603|organism=Nannochloropsis oceanica|type=mRNA|length=2728bp|location=Sequence derived from alignment at scaffold_15:398977..401704+ (Nannochloropsis oceanica)
AAACACAGGACACCAGCCTCCTTCCCCACCCGCCCACCACCCTCCATCAC
CACCATGCGACGATTGAGCGACTTGGTAAACCCGGTAAGTGCTTGGTCAT
GGTTTTCTGGTTTTTGGCGTATGTAGGCGCCTACTTGGCACGTTGCAAAC
GCGCCTCATTTGGCGCGGGCGGCCCACTTTGCGTATGACTTGTGTGTCGC
AACGACGAGTGACGCAGGCAGGAGGGACGCGTTTAGGGGGGGGGGCACCA
CGGTACAGCTCTGTCAGCATGCTCAGATAAGCAATGTCAGTCTTTTTTAG
TCCACTGGGGCAAAGTGGGTCAAGCAGGCGAGCTGCGGGCCTTATGGCTT
GATATGATGCCTGCAGCGACTACCACAGCACATTTTCTGTGTGCTGCACA
AGAGCAAGGCAATGCGCAGGTGGTATCACCACCAATAAGTGCGCGCGCCT
TAACGCTCCATCATACGTGCCCACGCACAATCCTATCCCCTGTTAATCCC
CTCTCTCCCTCGCCCTTTCCTTCCAATCATCGTGCACTACGTACGCCGTA
AGCCATCAAAATTGGCTTGGGCTCGGATGGTGTAATTAGCCGTACACATT
TCCACCCTGTTGTCACCCTTGTTCAGACGTTTCATCCCGCCCTTGTCACC
GACCGCTCTTTTCCTCCCGCCTCCCGCCTACTCCACGCACAGGTGCTTGG
CTTCCTCTCCCCTTGGAAGGGCTCGGCCAAGGCCACCACCTCCGACCCCA
TCCCCCGCGCCTCCTCCTCGGGCAGCAAGAAACCCGCCCCCTCTGCAAGC
AAAAAGGCCTCCAGCACGCCCGCTGCTTCTGCTGCTTCCACTTTGGGGAA
GCGTTCCCGTTCCTCCATTGGAAGCAACAAGGGTGAAACTCCTGCAGCGA
AAAAAACACATCTTTCCTCGATCAAGAAAAGCGCCCTGAAGAAGTCTGCG
GCTAAGAGTGTGAAGAAGAGCAGCATCGCTACAACTCCCAAATCCAAGAG
TAGCGCGATGAAGCCTCTCAAGTCTGCGGCCAAGAAGGTGGCTACCCCTC
TTGAGAGTGCTGCGAAGAAGCCCAACACCCCCTCGGCAAGTAGCAAGAAG
CCTGCCGCCACTGTCGCCCCCGCCGCCCCTGCTTCACACAAGAAAAAGAG
CGTAACAAAACCCGTGGTCAAGAAGGCAGCGATGCCTGCTTTGGTACGTA
GAGGCCTATGAAAGAATTGTATCAAGTAATGTCTTTGATTTTTTCACAGC
AGAGCGGCGGTTTTTGCCTTGCTTGTCGATGGTGAATAGATCTGTACATG
TCCTTTCTGTGCGTTTGACATCTTGTCTCTGATGTATGAACTTGTCCCCG
TTTAATGGAGAGAACGGGCTGGTCTCGGGGGGGTATGGAGGGAGAAGGGG
TTGAATCCTGTCCCTGCCGTATAGTGTGCCGGCCACGTACCTCGGCGGTG
TCACGCCGTTTTCATAATCATGGCGCCCGGCCAGCTGTAAGCGTGCGGTA
GGACAAGTCTCTCGCCAACAGGCAGGGTGAAGTCAATTTCTTGCATTCAT
TCGTCTACGCCCCTCTTTTTCCTCAATTTCGTCATCAGGTCGTGCCCCGT
CAGCCGAGTGCCCGCGCTGCCAAGGCCGCGAAGGCCCCTCCCGCCTCCAC
CACTACGGCGCCCGCGAGCAAGAAGGTGGTGGCAAAGAAGGCAGCTGCCG
CATCTGCGAGCAAGAAGGTGGTAGCTAAGAAGGTGGCGGCGGCACCTGCG
AGCAAGAAGTCGGTGGCTAAGAAGGTGGCGGCCACACCCGCGAAGAAGGC
GACCAAGCCGGCGCTGAAGAAGGCAGCAGCCCCTAAGAAGTCTGCTGCGG
TAGCTGGTACGTTTTCCAAGCCCTCCCAAAAGCCTGAATTTGCGTGTTCG
TTTATTTACTTTTTCCCCTCCCTTTCCCTGCCTCCTTCACACCATCATGT
CCACAGCGAAGGTGGCTCCCAAGAAGTCCGCGCCTGCGAAGAAGGCAACT
CGGCCAAGCCGCAAGTAAGGAGGAAGTGGAGTGCGGGAAGGAGGGAGGGG
AGAGCGATGAAAGGCAGAAGGTTGTGACTTGAGTAACGCGTGGTGTTTGG
TGTGATTGTATTCGGCCGGCAGAGGTGCACAAACAGGAGAAGAAAGAGGA
TTGAAATGGGGGAGGGAGAAAAAGACGATGTGTGGAAGACATCTCGAAGG
GCAGGATACAGGCAGGCAAAGAAAGTGTCCAAGTGTATGGGTAAACTGAT
AACGAGGGTGAGAAGGGGTATAAAAATGAAACATAAGAGAAAGAATATTT
TCGTGTTTGTCGTGTGGATGAGTGGATGTATGAATAAGTTTGGTTGACAC
CAACGGCATGAGGAGAGGAGACGAGTGACGAAAAAAAGTCCCATAAAGCG
TGCAATAAAAAGAGGAAGACAACAACAACAACAACAACAACAACAACAAC
AACAGCCTCGTGGTAACCTTCACAAACGGACATTTTTTTGCAATCTCAGC
TCTGTTCCTCTAAATCCTCCTACTTCTCGTGTACCTCCGCTATCATGTCC
CTCCTCCTCCACCCGCCCTTTCCTTTTTACACGCAAGAACTCGCTGCTAT
CATCAGGGCGGTCGTCGTGTGGATCGCAGCTAGACCCTGTCTACTTCCTC
CACTCCCGCGCTTTGCTTTTGTTGCTTCCCTCCCCACTTGCGCTCGCGGT
GACAGCGGCTAGAACAAGGGCCCCTTCT

Coding sequence (CDS) from alignment at scaffold_15:398977..401704+

>mRNA_6349 ID=mRNA_6349|Name=jgi.p|Nanoce1779_2|90603|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at scaffold_15:398977..401704+ (Nannochloropsis oceanica)
ATGCGACGATTGAGCGACTTGGTAAACCCGGTGCTTGGCTTCCTCTCCCC
TTGGAAGGGCTCGGCCAAGGCCACCACCTCCGACCCCATCCCCCGCGCCT
CCTCCTCGGGCAGCAAGAAACCCGCCCCCTCTGCAAGCAAAAAGGCCTCC
AGCACGCCCGCTGCTTCTGCTGCTTCCACTTTGGGGAAGCGTTCCCGTTC
CTCCATTGGAAGCAACAAGGGTGAAACTCCTGCAGCGAAAAAAACACATC
TTTCCTCGATCAAGAAAAGCGCCCTGAAGAAGTCTGCGGCTAAGAGTGTG
AAGAAGAGCAGCATCGCTACAACTCCCAAATCCAAGAGTAGCGCGATGAA
GCCTCTCAAGTCTGCGGCCAAGAAGGTGGCTACCCCTCTTGAGAGTGCTG
CGAAGAAGCCCAACACCCCCTCGGCAAGTAGCAAGAAGCCTGCCGCCACT
GTCGCCCCCGCCGCCCCTGCTTCACACAAGAAAAAGAGCGTAACAAAACC
CGTGGTCAAGAAGGCAAAGAAAGTGTCCAAGTGTATGGGTAAACTGATAA
CGAGGGTGAGAAGGGGTATAAAAATGAAACATAAGAGAAAGAATATTTTC
GTGTTTGTCGTGTGGATGAGTGGATGTATGAATAAGTTTGGTTGAATGCG
ACGATTGAGCGACTTGGTAAACCCGGTGCTTGGCTTCCTCTCCCCTTGGA
AGGGCTCGGCCAAGGCCACCACCTCCGACCCCATCCCCCGCGCCTCCTCC
TCGGGCAGCAAGAAACCCGCCCCCTCTGCAAGCAAAAAGGCCTCCAGCAC
GCCCGCTGCTTCTGCTGCTTCCACTTTGGGGAAGCGTTCCCGTTCCTCCA
TTGGAAGCAACAAGGGTGAAACTCCTGCAGCGAAAAAAACACATCTTTCC
TCGATCAAGAAAAGCGCCCTGAAGAAGTCTGCGGCTAAGAGTGTGAAGAA
GAGCAGCATCGCTACAACTCCCAAATCCAAGAGTAGCGCGATGAAGCCTC
TCAAGTCTGCGGCCAAGAAGGTGGCTACCCCTCTTGAGAGTGCTGCGAAG
AAGCCCAACACCCCCTCGGCAAGTAGCAAGAAGCCTGCCGCCACTGTCGC
CCCCGCCGCCCCTGCTTCACACAAGAAAAAGAGCGTAACAAAACCCGTGG
TCAAGAAGGCAAAGAAAGTGTCCAAGTGTATGGGTAAACTGATAACGAGG
GTGAGAAGGGGTATAAAAATGAAACATAAGAGAAAGAATATTTTCGTGTT
TGTCGTGTGGATGAGTGGATGTATGAATAAGTTTGGTTGAATGCGACGAT
TGAGCGACTTGGTAAACCCGGTGCTTGGCTTCCTCTCCCCTTGGAAGGGC
TCGGCCAAGGCCACCACCTCCGACCCCATCCCCCGCGCCTCCTCCTCGGG
CAGCAAGAAACCCGCCCCCTCTGCAAGCAAAAAGGCCTCCAGCACGCCCG
CTGCTTCTGCTGCTTCCACTTTGGGGAAGCGTTCCCGTTCCTCCATTGGA
AGCAACAAGGGTGAAACTCCTGCAGCGAAAAAAACACATCTTTCCTCGAT
CAAGAAAAGCGCCCTGAAGAAGTCTGCGGCTAAGAGTGTGAAGAAGAGCA
GCATCGCTACAACTCCCAAATCCAAGAGTAGCGCGATGAAGCCTCTCAAG
TCTGCGGCCAAGAAGGTGGCTACCCCTCTTGAGAGTGCTGCGAAGAAGCC
CAACACCCCCTCGGCAAGTAGCAAGAAGCCTGCCGCCACTGTCGCCCCCG
CCGCCCCTGCTTCACACAAGAAAAAGAGCGTAACAAAACCCGTGGTCAAG
AAGGCAAAGAAAGTGTCCAAGTGTATGGGTAAACTGATAACGAGGGTGAG
AAGGGGTATAAAAATGAAACATAAGAGAAAGAATATTTTCGTGTTTGTCG
TGTGGATGAGTGGATGTATGAATAAGTTTGGTTGA

Synonyms

Publications