jgi.p|Nanoce1779_2|594679, mRNA_6348 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594679
Unique NamemRNA_6348
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length841
Alignment locationscaffold_15:397483..398737 -

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Properties
Property NameValue
TranscriptId594765
TrackFilteredModels2
ProteinId594679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:397483..398737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594679gene_6348Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594679mRNA_6348-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6348CDS_6348Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6348 ID=mRNA_6348|Name=jgi.p|Nanoce1779_2|594679|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
AGAAAACAAAAAGATGAAGCAGCTTCGCGCCAAATAAATTGATAGGACGA
CATATCGGAGTTTTGAAAAAAAGTCGAAAGGAGTTCTGTGTGCCCTAGTG
CAACCTCCAGACATGACGAGGGCGCATGCCTACACCACAGACACTGAGGA
CGCGAATAGGACCTCTGCTATTTACCACCAAATTCTCCAACAACTGGCGC
AGGACCGTAATGATGATGATGATGATGATGATGGCACCACGTGCCCGTGC
CCGCCTCCACTGGAAAGACGCTTTTCAAAGGGAGGATGTCCGGAGAATAT
GGAGGTACGGCGCCATGATCATCGTTACGGGCTTTGTGGGAAAGCAGTTA
GTCTGGTATGTCGCCCAAAGCAACATAAAGGAAATCCATGAAAAGCAGCA
CAAGGAAGGTAAAACGATCTATGACATCCCCTCTTTGACTAAGTTTCATT
ACCTCTTGTCGTTCCCGCAAATACCATTTCCTCATGACTCTCCTCTTCCG
TCCATCCTTTCCTCCTTTCCTCCTTTCCTCCTCTTCTCCCTCCAGCATCC
GAAGCTCTTGAGAAAGCTTACGCAGATGGCCGTCGTCTAGCCGCCATGAA
ACGCGCACGAATCCTGGCCGAAATCGCAGAGGTGGAACAGGCGAAGAGCA
AGCAAAAAAAAAGCAGCAGCTAGAAAGACATGTGAGGGCAAAGTGAGGAA
AAAGACGAAATCAAAATTGTGAAATCGGAAAATAATATTCTCTTTGCGTG
GGCTCGTTATAAGACTGACAAATGTACAAAGTTAGAGACAATAATGCCAG
TAAAAGAGCGCACACAATTAAATTGACGACTAATTCACCAA
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protein sequence of jgi.p|Nanoce1779_2|594679

>mRNA_6348-protein ID=mRNA_6348-protein|Name=jgi.p|Nanoce1779_2|594679|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MPTPQTLRTRIGPLLFTTKFSNNWRRTVMMMMMMMMAPRARARLHWKDAF
QREDVRRIWRYGAMIIVTGFVGKQLVWYVAQSNIKEIHEKQHKEGKTIYD
IPSLTKFHYLLSFPQIPFPHDSPLPSILSSFPPFLLFSLQHPKLLRKLTQ
MAVV*
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mRNA from alignment at scaffold_15:397483..398737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6348 ID=mRNA_6348|Name=jgi.p|Nanoce1779_2|594679|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp|location=Sequence derived from alignment at scaffold_15:397483..398737- (Nannochloropsis oceanica)
AGAAAACAAAAAGATGAAGCAGCTTCGCGCCAAATAAATTGATAGGACGA
CATATCGGAGTTTTGAAAAAAAGTCGAAAGGAGTTCTGTGTGCCCTAGTG
CAACCTCCAGACATGACGAGGGCGCATGCCTACACCACAGACACTGAGGA
CGCGAATAGGACCTCTGCTATTTACCACCAAATTCTCCAACAACTGGCGC
AGGTAAGCAGCCAAGCAAAAAACTGACCTCCTGCCTTACTGCCTACCGCA
ACGCTTCACTGACGAAGCACGCAGCAAAAAGCAGTCCGAAGTGCCCTGCG
TCCCCCTGACCGGAAACTCGGCAGAGCTGCAGCGAGCATTTAATCTCGCC
GCTACCGCAAGACCTTGCTTTTCTTCCACTCTTTTCCCTCTGCGCTGCTG
ATTAACAAAGTATCAACCCTTGCCACTCCCGCAAGCCAGGACCGTAATGA
TGATGATGATGATGATGATGGCACCACGTGCCCGTGCCCGCCTCCACTGG
AAAGACGCTTTTCAAAGGGAGGATGTCCGGAGAATATGGAGGTAAGTACA
TATGTGTGGGAACTCTGCGGGTGTGCTGCCATGCGTCCTTTCCACCTGGG
CTTACCATCTCTCCGTCCCTTCCCTTCACACACTGGGTAGCATACCCATC
GACAAAATACGCACGTCTCATCGCCTTTCCATCCTTCCCCCCTTTCATTC
ATCCCCTTTCTCTTTCAGGTACGGCGCCATGATCATCGTTACGGGCTTTG
TGGGAAAGCAGTTAGTCTGGTATGTCGCCCAAAGCAACATAAAGGAAATC
CATGAAAAGCAGCACAAGGAAGGTAAAACGATCTATGACATCCCCTCTTT
GACTAAGTTTCATTACCTCTTGTCGTTCCCGCAAATACCATTTCCTCATG
ACTCTCCTCTTCCGTCCATCCTTTCCTCCTTTCCTCCTTTCCTCCTCTTC
TCCCTCCAGCATCCGAAGCTCTTGAGAAAGCTTACGCAGATGGCCGTCGT
CTAGCCGCCATGAAACGCGCACGAATCCTGGCCGAAATCGCAGAGGTGGA
ACAGGCGAAGAGCAAGCAAAAAAAAAGCAGCAGCTAGAAAGACATGTGAG
GGCAAAGTGAGGAAAAAGACGAAATCAAAATTGTGAAATCGGAAAATAAT
ATTCTCTTTGCGTGGGCTCGTTATAAGACTGACAAATGTACAAAGTTAGA
GACAATAATGCCAGTAAAAGAGCGCACACAATTAAATTGACGACTAATTC
ACCAA
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Coding sequence (CDS) from alignment at scaffold_15:397483..398737-

>mRNA_6348 ID=mRNA_6348|Name=jgi.p|Nanoce1779_2|594679|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_15:397483..398737- (Nannochloropsis oceanica)
GTACGGCGCCATGATCATCGTTACGGGCTTTGTGGGAAAGCAGTTAGTCT
GGTATGTCGCCCAAAGCAACATAAAGGAAATCCATGAAAAGCAGCACAAG
GAAGGTAAAACGATCTATGACATCCCCTCTTTGACTAAGTTTCATTACCT
CTTGTCGTTCCCGCAAATACCATTTCCTCATGACTCTCCTCTTCCGTCCA
TCCTTTCCTCCTTTCCTCCTTTCCTCCTCTTCTCCCTCCAGCATCCGAAG
CTCTTGAGAAAGCTTACGCAGATGGCCGTCGTCTAGGACCGTAATGATGA
TGATGATGATGATGATGGCACCACGTGCCCGTGCCCGCCTCCACTGGAAA
GACGCTTTTCAAAGGGAGGATGTCCGGAGAATATGGAGATGCCTACACCA
CAGACACTGAGGACGCGAATAGGACCTCTGCTATTTACCACCAAATTCTC
CAACAACTGGCGCAGGTACGGCGCCATGATCATCGTTACGGGCTTTGTGG
GAAAGCAGTTAGTCTGGTATGTCGCCCAAAGCAACATAAAGGAAATCCAT
GAAAAGCAGCACAAGGAAGGTAAAACGATCTATGACATCCCCTCTTTGAC
TAAGTTTCATTACCTCTTGTCGTTCCCGCAAATACCATTTCCTCATGACT
CTCCTCTTCCGTCCATCCTTTCCTCCTTTCCTCCTTTCCTCCTCTTCTCC
CTCCAGCATCCGAAGCTCTTGAGAAAGCTTACGCAGATGGCCGTCGTCTA
GGACCGTAATGATGATGATGATGATGATGATGGCACCACGTGCCCGTGCC
CGCCTCCACTGGAAAGACGCTTTTCAAAGGGAGGATGTCCGGAGAATATG
GAGATGCCTACACCACAGACACTGAGGACGCGAATAGGACCTCTGCTATT
TACCACCAAATTCTCCAACAACTGGCGCAGGTACGGCGCCATGATCATCG
TTACGGGCTTTGTGGGAAAGCAGTTAGTCTGGTATGTCGCCCAAAGCAAC
ATAAAGGAAATCCATGAAAAGCAGCACAAGGAAGGTAAAACGATCTATGA
CATCCCCTCTTTGACTAAGTTTCATTACCTCTTGTCGTTCCCGCAAATAC
CATTTCCTCATGACTCTCCTCTTCCGTCCATCCTTTCCTCCTTTCCTCCT
TTCCTCCTCTTCTCCCTCCAGCATCCGAAGCTCTTGAGAAAGCTTACGCA
GATGGCCGTCGTCTAGGACCGTAATGATGATGATGATGATGATGATGGCA
CCACGTGCCCGTGCCCGCCTCCACTGGAAAGACGCTTTTCAAAGGGAGGA
TGTCCGGAGAATATGGAGATGCCTACACCACAGACACTGAGGACGCGAAT
AGGACCTCTGCTATTTACCACCAAATTCTCCAACAACTGGCGCAG
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Synonyms
Publications