jgi.p|Nanoce1779_2|594674, mRNA_6347 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594674
Unique NamemRNA_6347
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1380
Alignment locationscaffold_15:396054..397433 -

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Properties
Property NameValue
TranscriptId594760
TrackFilteredModels2
ProteinId594674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:396054..397433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594674gene_6347Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594674mRNA_6347-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6347CDS_6347Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6347 ID=mRNA_6347|Name=jgi.p|Nanoce1779_2|594674|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
TTGATCATGTTGTTGGCATCTCTTGCTTCTTTTCCTTCTTTTTCTATATC
TTACTCTCCCTATGACTTATCTCGTCCTCGTAACCTTTCCCTTTCGACTC
ACGCCCTTTTCAATCTCTTCGCCGACGGAGGATGGGAACCACATGAATGA
ATGATTATTTATTTTCGAGATTGTCCCTTCTCTTTTTATCTCCCTCTATC
TATCTCTCCGTGTTTATACGTTTTCCAGCCTCTACTTCTCTCTCCTTATT
TTCTCTCCGTCTCTTTTACTCTTTCGTTTATGGCTCTCGCACGTTTGTCA
CCCTGCCAGCTCCCAAGCGCGCTACGCCGACATACCCCCTTTCCCACCTC
TCTCTTCCTTTCTATTCCTTCCTCTCACTCGAGCCGCTGTGCCGAGCTGA
CCCCATGCGCTGATGGAGGAAAAACCAAAAAATATATTTCTATACACATG
CCTCTTCCTAACCCTCTTTTCTGTCGGTCTTTTATTCTCTTACTTATCCT
TCTCCTCCTTTTTTTCTCCACCTTTATCTTCTTCTTCCCACCCTCTCTTT
CCACAAACCTTCATAAGGTCGTATTGTCTGTATATTCAAGCCCTCCTCCT
CTGCCCTAAGTGCGAGCTCGTGCCTTCACGGACCTCCAAGCAAAGGACAA
CACACGCGTACTCACCCGTCTCATATTCCTTCCCCCTTATATTTCTCTCC
GTATTCCCAACCTCCTGTCTCTCAACTTTCAAATATGTTCCGTCCATAAC
ACTTCAATTTCACTCGCGCACATAGACATAATATAGATAGTGCGATGAAT
TAAGAAATTTTCACAAGAGCCAAAAATGCAACATCTGTGCATTCTTTCCC
TCTCGAGTGGTGGTTGTGTGTTTGGGGTGGATGGGTGAAATAAGGAAACT
TAATGATGGTGGGAGACTCTTCTCTTTCTGCATCCTTATCTCTTCTCTGA
CGTTTACTACGAAGGAAGTACGAATAAATCTTTATTTCTTACTGACCTCG
CTCCTTTACGGTCACCCCTCCCACCTCCCCAGCCTCCCCCTCCTTCTCCT
CTGCCAACTTCTTCTTCAATGCCGTTGTCGCTGTCGTCTTTTGCGTGCCC
AATTCTACGCCCTCTCCCTCGCCCTCTTCCTTTACCTTCTTGGTTGAAGC
CGTCGCTGCTTCAACCCCGCCTGCTCCTCCTTCCATTCTATCCTCAGCCT
TTCGCTTCCTACTACAGCTGCTCTCCTCCGAGTCTGCTACTGTGGCCCCG
GCCTCTCCTTCTTTCCCACCATCCACCGTGGGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGGCAGCAGCTGCTTTTGTCTCTTCCTCTTCATCGTCCT
CTATCCTCAAATCATCATCTAGTTCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|594674

>mRNA_6347-protein ID=mRNA_6347-protein|Name=jgi.p|Nanoce1779_2|594674|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MIIYFRDCPFSFYLPLSISPCLYVFQPLLLSPYFLSVSFTLSFMALARLS
PCQLPSALRRHTPFPTSLFLSIPSSHSSRCAELTPCADGGKTKKYISIHM
PLPNPLFCRSFILLLILLLLFFSTFIFFFPPSLSTNLHKVVLSVYSSPPP
LP*
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mRNA from alignment at scaffold_15:396054..397433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6347 ID=mRNA_6347|Name=jgi.p|Nanoce1779_2|594674|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at scaffold_15:396054..397433- (Nannochloropsis oceanica)
TTGATCATGTTGTTGGCATCTCTTGCTTCTTTTCCTTCTTTTTCTATATC
TTACTCTCCCTATGACTTATCTCGTCCTCGTAACCTTTCCCTTTCGACTC
ACGCCCTTTTCAATCTCTTCGCCGACGGAGGATGGGAACCACATGAATGA
ATGATTATTTATTTTCGAGATTGTCCCTTCTCTTTTTATCTCCCTCTATC
TATCTCTCCGTGTTTATACGTTTTCCAGCCTCTACTTCTCTCTCCTTATT
TTCTCTCCGTCTCTTTTACTCTTTCGTTTATGGCTCTCGCACGTTTGTCA
CCCTGCCAGCTCCCAAGCGCGCTACGCCGACATACCCCCTTTCCCACCTC
TCTCTTCCTTTCTATTCCTTCCTCTCACTCGAGCCGCTGTGCCGAGCTGA
CCCCATGCGCTGATGGAGGAAAAACCAAAAAATATATTTCTATACACATG
CCTCTTCCTAACCCTCTTTTCTGTCGGTCTTTTATTCTCTTACTTATCCT
TCTCCTCCTTTTTTTCTCCACCTTTATCTTCTTCTTCCCACCCTCTCTTT
CCACAAACCTTCATAAGGTCGTATTGTCTGTATATTCAAGCCCTCCTCCT
CTGCCCTAAGTGCGAGCTCGTGCCTTCACGGACCTCCAAGCAAAGGACAA
CACACGCGTACTCACCCGTCTCATATTCCTTCCCCCTTATATTTCTCTCC
GTATTCCCAACCTCCTGTCTCTCAACTTTCAAATATGTTCCGTCCATAAC
ACTTCAATTTCACTCGCGCACATAGACATAATATAGATAGTGCGATGAAT
TAAGAAATTTTCACAAGAGCCAAAAATGCAACATCTGTGCATTCTTTCCC
TCTCGAGTGGTGGTTGTGTGTTTGGGGTGGATGGGTGAAATAAGGAAACT
TAATGATGGTGGGAGACTCTTCTCTTTCTGCATCCTTATCTCTTCTCTGA
CGTTTACTACGAAGGAAGTACGAATAAATCTTTATTTCTTACTGACCTCG
CTCCTTTACGGTCACCCCTCCCACCTCCCCAGCCTCCCCCTCCTTCTCCT
CTGCCAACTTCTTCTTCAATGCCGTTGTCGCTGTCGTCTTTTGCGTGCCC
AATTCTACGCCCTCTCCCTCGCCCTCTTCCTTTACCTTCTTGGTTGAAGC
CGTCGCTGCTTCAACCCCGCCTGCTCCTCCTTCCATTCTATCCTCAGCCT
TTCGCTTCCTACTACAGCTGCTCTCCTCCGAGTCTGCTACTGTGGCCCCG
GCCTCTCCTTCTTTCCCACCATCCACCGTGGGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGGCAGCAGCTGCTTTTGTCTCTTCCTCTTCATCGTCCT
CTATCCTCAAATCATCATCTAGTTCCTCCT
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Coding sequence (CDS) from alignment at scaffold_15:396054..397433-

>mRNA_6347 ID=mRNA_6347|Name=jgi.p|Nanoce1779_2|594674|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_15:396054..397433- (Nannochloropsis oceanica)
ATGATTATTTATTTTCGAGATTGTCCCTTCTCTTTTTATCTCCCTCTATC
TATCTCTCCGTGTTTATACGTTTTCCAGCCTCTACTTCTCTCTCCTTATT
TTCTCTCCGTCTCTTTTACTCTTTCGTTTATGGCTCTCGCACGTTTGTCA
CCCTGCCAGCTCCCAAGCGCGCTACGCCGACATACCCCCTTTCCCACCTC
TCTCTTCCTTTCTATTCCTTCCTCTCACTCGAGCCGCTGTGCCGAGCTGA
CCCCATGCGCTGATGGAGGAAAAACCAAAAAATATATTTCTATACACATG
CCTCTTCCTAACCCTCTTTTCTGTCGGTCTTTTATTCTCTTACTTATCCT
TCTCCTCCTTTTTTTCTCCACCTTTATCTTCTTCTTCCCACCCTCTCTTT
CCACAAACCTTCATAAGGTCGTATTGTCTGTATATTCAAGCCCTCCTCCT
CTGCCCTAA
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Synonyms
Publications