jgi.p|Nanoce1779_2|557256, mRNA_6346 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557256
Unique Name	mRNA_6346
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1021
Alignment location	scaffold_15:392933..394099 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557342
Track	FilteredModels2
ProteinId	557256

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:392933..394099 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557256	gene_6346	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557256	mRNA_6346-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6346	CDS_6346	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:392933..394099+
coding sequence from alignment at scaffold_15:392933..394099+

mRNA sequence

>mRNA_6346 ID=mRNA_6346|Name=jgi.p|Nanoce1779_2|557256|organism=Nannochloropsis oceanica|type=mRNA|length=1021bp
AGACATACAGAACTCGGCTACTAGATCCAGTGGTCTCTCCCTGGTATTTT
GCATCGCCGTCCCTGTTCACTTTTTTCCTTGGACCGTTCGAGCACGCACA
CAACACGATTAAGAAGCAACAGCAGTCTCTTTTGTCTGCCCTCGCGCCCG
CAAGTGTCACCAACACAAGATCCTGCGCGCACGCACACAATTATTCACAT
ACCCCAAGCCTGCGAGCCAGTAGGCCCTTCCACACCACTGCATGGACCAG
CACCAAGCAGACCCACCCGTGCCATCCATCACTAACAACAACAAGAACAA
CAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACGCCACAAGCAACCACAACGCCAACGATAACAACAACGCCAAC
AGTCCCAGCATCCATATGTCCCCCGGATTTCCCTCTCCTCCCTTCGGCCA
TCCGGCCGCCTCTCTCTATGGCATGAATTTCCCCCAAGGCCCTCCTGGCA
GTGCACCTAACATGCATGCAATGTTTGGTAGTGGTGCTCCGGGCATGGGA
GGAGTAGGAGGAATGGTTAGCCCGTTCAACCCTCACGGAGTCCCTCACCA
TCTTCACCAGCTTCACCACAATATGAGTGGTGGTGCTGGTGCAGGAGGAG
GCGGGGGGGAAGGACGGCTTCGACCGACGGTGGGAGGCCCGATGGTGTCT
AGTGGCCCACTTGTGGGAGGAACAGAGAAGAGACGGGCGGTGAGGAAGTG
GCGTCCGCAGGAGGATGAGTTGTTGACGGCGTTGGTGAGGGAGTATGGGA
CGAAGCATTGGGGCATTATCTGCACGAAATTTGAGGGGAGGACGGGGAAG
CAGTGTCGGGAGCGGTGGCATAATCAGCTGGACCCCCACATCAAGAAAGA
GGCCTGGTCGAAAGAAGAGGAGGATCTGCTGCTCAAGGCACACCAACAAT
TTGGAAATCGCTGGGCGGAGATCGCCAAGGTTTTGCCTGGACGAACGGAC
AATGCGATCAAGAACAGGTAA

protein sequence of jgi.p|Nanoce1779_2|557256

>mRNA_6346-protein ID=mRNA_6346-protein|Name=jgi.p|Nanoce1779_2|557256|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MDQHQADPPVPSITNNNKNNKNNNNNNNNNNNNNNNNNNATSNHNANDNN
NANSPSIHMSPGFPSPPFGHPAASLYGMNFPQGPPGSAPNMHAMFGSGAP
GMGGVGGMVSPFNPHGVPHHLHQLHHNMSGGAGAGGGGGEGRLRPTVGGP
MVSSGPLVGGTEKRRAVRKWRPQEDELLTALVREYGTKHWGIICTKFEGR
TGKQCRERWHNQLDPHIKKEAWSKEEEDLLLKAHQQFGNRWAEIAKVLPG
RTDNAIKNR*

mRNA from alignment at scaffold_15:392933..394099+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6346 ID=mRNA_6346|Name=jgi.p|Nanoce1779_2|557256|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at scaffold_15:392933..394099+ (Nannochloropsis oceanica)
AGACATACAGAACTCGGCTACTAGATCCAGTGGTCTCTCCCTGGTATTTT
GCATCGCCGTCCCTGTTCACTTTTTTCCTTGGACCGTTCGAGCACGCACA
CAACACGATTAAGAAGCAACAGCAGTCTCTTTTGTCTGCCCTCGCGCCCG
CAAGTGTCACCAACACAAGATCCTGCGCGCACGCACACAATTATTCACAT
ACCCCAAGCCTGCGAGCCAGTAGGCCCTTCCACACCACTGCATGGACCAG
CACCAAGCAGACCCACCCGTGCCATCCATCACTAACAACAACAAGAACAA
CAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACGCCACAAGCAACCACAACGCCAACGATAACAACAACGCCAAC
AGTCCCAGCATCCATATGTCCCCCGGATTTCCCTCTCCTCCCTTCGGCCA
TCCGGCCGCCTCTCTCTATGGCATGAATTTCCCCCAAGGCCCTCCTGGCA
GTGCACCTAACATGCATGCAATGTTTGGTAGTGGTGCTCCGGGCATGGGA
GGAGTAGGAGGAATGGTTAGCCCGTTCAACCCTCACGGAGTCCCTCACCA
TCTTCACCAGCTTCACCACAATATGAGTGGTGGTGCTGGTGCAGGAGGAG
GCGGGGGGGAAGGACGGCTTCGACCGACGGTGGGAGGCCCGATGGTGTCT
AGTGGCCCACTTGTGGGAGGAACAGAGAAGAGACGGGCGGTGAGGAAGTG
GCGTCCGCAGGAGGATGAGTTGTTGACGGCGTTGGTGAGGGAGTATGGGA
CGAAGCATTGGGGCATTATCTGCACGAAATTTGAGGGGAGGACGGGGAAG
CAGTGTCGGGAGCGGTGGCATAATCAGGTACGTGCCCTCCTTCCCTCCCT
CCCTCCATTCTCTTCTTTGATTTGTCCCACTTATGCCTACAGGTTCAATC
TCTAAAATAACTTCGGTGAAACACAGCACACTCACCATTCCTCTCCTTCC
CTCACTCCCTCCCTCCCCTCTAGCTGGACCCCCACATCAAGAAAGAGGCC
TGGTCGAAAGAAGAGGAGGATCTGCTGCTCAAGGCACACCAACAATTTGG
AAATCGCTGGGCGGAGATCGCCAAGGTTTTGCCTGGACGAACGGACAATG
CGATCAAGAACAGGTAA

Coding sequence (CDS) from alignment at scaffold_15:392933..394099+

>mRNA_6346 ID=mRNA_6346|Name=jgi.p|Nanoce1779_2|557256|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_15:392933..394099+ (Nannochloropsis oceanica)
ATGGACCAGCACCAAGCAGACCCACCCGTGCCATCCATCACTAACAACAA
CAAGAACAACAAGAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACGCCACAAGCAACCACAACGCCAACGATAACAAC
AACGCCAACAGTCCCAGCATCCATATGTCCCCCGGATTTCCCTCTCCTCC
CTTCGGCCATCCGGCCGCCTCTCTCTATGGCATGAATTTCCCCCAAGGCC
CTCCTGGCAGTGCACCTAACATGCATGCAATGTTTGGTAGTGGTGCTCCG
GGCATGGGAGGAGTAGGAGGAATGGTTAGCCCGTTCAACCCTCACGGAGT
CCCTCACCATCTTCACCAGCTTCACCACAATATGAGTGGTGGTGCTGGTG
CAGGAGGAGGCGGGGGGGAAGGACGGCTTCGACCGACGGTGGGAGGCCCG
ATGGTGTCTAGTGGCCCACTTGTGGGAGGAACAGAGAAGAGACGGGCGGT
GAGGAAGTGGCGTCCGCAGGAGGATGAGTTGTTGACGGCGTTGGTGAGGG
AGTATGGGACGAAGCATTGGGGCATTATCTGCACGAAATTTGAGGGGAGG
ACGGGGAAGCAGTGTCGGGAGCGGTGGCATAATCAGCTGGACCCCCACAT
CAAGAAAGAGGCCTGGTCGAAAGAAGAGGAGGATCTGCTGCTCAAGGCAC
ACCAACAATTTGGAAATCGCTGGGCGGAGATCGCCAAGGTTTTGCCTGGA
CGAACGGACAATGCGATCAAGAACAGGTAAATGGACCAGCACCAAGCAGA
CCCACCCGTGCCATCCATCACTAACAACAACAAGAACAACAAGAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGCC
ACAAGCAACCACAACGCCAACGATAACAACAACGCCAACAGTCCCAGCAT
CCATATGTCCCCCGGATTTCCCTCTCCTCCCTTCGGCCATCCGGCCGCCT
CTCTCTATGGCATGAATTTCCCCCAAGGCCCTCCTGGCAGTGCACCTAAC
ATGCATGCAATGTTTGGTAGTGGTGCTCCGGGCATGGGAGGAGTAGGAGG
AATGGTTAGCCCGTTCAACCCTCACGGAGTCCCTCACCATCTTCACCAGC
TTCACCACAATATGAGTGGTGGTGCTGGTGCAGGAGGAGGCGGGGGGGAA
GGACGGCTTCGACCGACGGTGGGAGGCCCGATGGTGTCTAGTGGCCCACT
TGTGGGAGGAACAGAGAAGAGACGGGCGGTGAGGAAGTGGCGTCCGCAGG
AGGATGAGTTGTTGACGGCGTTGGTGAGGGAGTATGGGACGAAGCATTGG
GGCATTATCTGCACGAAATTTGAGGGGAGGACGGGGAAGCAGTGTCGGGA
GCGGTGGCATAATCAGCTGGACCCCCACATCAAGAAAGAGGCCTGGTCGA
AAGAAGAGGAGGATCTGCTGCTCAAGGCACACCAACAATTTGGAAATCGC
TGGGCGGAGATCGCCAAGGTTTTGCCTGGACGAACGGACAATGCGATCAA
GAACAGGTAA

Synonyms

Publications